|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071823 ID=TCONS_00071823|Name=TCONS_00071823|organism=Clytia hemisphaerica|type=transcript|length=1084bp
GGTCGTGAAATGGATGATATCTCAATCGGTGATGAACATATGTCTTGGTA
CAAGGACCATGGCATTGACACTCACGTCTCGCCAATAGGTAATGGAGGAC
CCATCGCATGGCCTAACAGCCAACGCGGACAATCGTTCAATCAAAATATT
CgtgagaaaaatacaaaaagtaaaaaatataaatacgAAAGCGACAACAC
ATTCCAGTTAGCTTTGCAATATTTTAATAAACGCTGGGAGAAACCGGTCA
ATAGGAATAAGAAACCAGGTCGGAGAGAAGATCAGGAAATTTACGAAGAG
CGTATAAATTATTTTAACGCAAACGCTGTTAATATCATCGAATGTCGTAA
ATGTAAAGACGAGGTAAACGGACACCGTTATTACGTAAACGAGAACCGGC
AAGGTGACACGTTATGTTACGGTTGCATGGCACGTAAACTTAAGAAAGAA
GTAGGGACAGATTCGTGTCGACTTCAAGCTGAATTGTTATGGTTAGAAGA
GAAAGATCTGGACAAGAAGTATGACTATCAATGGAGATTTAAACATTAAG
AGAAAGAAGAGCTTTTGTACATTTTTCTTGTGTAGAGATCTTTGTAATAG
CGaaattatgtatctggaattctctacggccaTGGTTAAAGTGGCTAGGg
taatggcgagtaaggcaagtaatggcgggtgaaagcaagttccacatgtc
gactttgcttatagggtgttttggtgtttttcccgtacagagcaaagtag
acaacgacatgtcgcctttagTGACGACCCACATGGGCAGTCCCCTCAAC
CgcagccgtagaatatctccgatacattaTCTCGCTAATTATTCTCAGTA
GCGAGTTTGTGTATTTGCACTCTTGAGAATGGTAAAGtaactgaagcgat
ttgaaataacccgcagttttgatccgcaaaatcgaggacggtgaaagtgc
tgatttaccgtcgtcctcagtcagtcaggggTTTTTTTGAGTCCgcaaag
ctttatgttcttatatagtatgttcttaagattttacttGTGTTTGAACC
CTCATAAACAAAAAAGACGAATCTTTTATATACC Run BLAST on NCBI protein sequence of TCONS_00071823-protein >TCONS_00071823-protein ID=TCONS_00071823-protein|Name=TCONS_00071823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
GREMDDISIGDEHMSWYKDHGIDTHVSPIGNGGPIAWPNSQRGQSFNQNI
REKNTKSKKYKYESDNTFQLALQYFNKRWEKPVNRNKKPGRREDQEIYEE
RINYFNANAVNIIECRKCKDEVNGHRYYVNENRQGDTLCYGCMARKLKKE
VGTDSCRLQAELLWLEEKDLDKKYDYQWRFKH Run BLAST on NCBI transcript from alignment at scaffold_63:802506..803589 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071823 ID=TCONS_00071823|Name=TCONS_00071823|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at scaffold_63:802506..803589 (Clytia hemisphaerica)
GGTATATAAAAGATTCGTCTTTTTTGTTTATGAGGGTTCAAACACaagta
aaatcttaagaacatactatataagaacataaagctttgcGGACTCAAAA
AAAcccctgactgactgaggacgacggtaaatcagcactttcaccgtcct
cgattttgcggatcaaaactgcgggttatttcaaatcgcttcagttaCTT
TACCATTCTCAAGAGTGCAAATACACAAACTCGCTACTGAGAATAATTAG
CGAGAtaatgtatcggagatattctacggctgcGGTTGAGGGGACTGCCC
ATGTGGGTCGTCActaaaggcgacatgtcgttgtctactttgctctgtac
gggaaaaacaccaaaacaccctataagcaaagtcgacatgtggaacttgc
tttcacccgccattacttgccttactcgccattacCCTAGCCACTTTAAC
CAtggccgtagagaattccagatacataatttCGCTATTACAAAGATCTC
TACACAAGAAAAATGTACAAAAGCTCTTCTTTCTCTTAATGTTTAAATCT
CCATTGATAGTCATACTTCTTGTCCAGATCTTTCTCTTCTAACCATAACA
ATTCAGCTTGAAGTCGACACGAATCTGTCCCTACTTCTTTCTTAAGTTTA
CGTGCCATGCAACCGTAACATAACGTGTCACCTTGCCGGTTCTCGTTTAC
GTAATAACGGTGTCCGTTTACCTCGTCTTTACATTTACGACATTCGATGA
TATTAACAGCGTTTGCGTTAAAATAATTTATACGCTCTTCGTAAATTTCC
TGATCTTCTCTCCGACCTGGTTTCTTATTCCTATTGACCGGTTTCTCCCA
GCGTTTATTAAAATATTGCAAAGCTAACTGGAATGTGTTGTCGCTTTcgt
atttatattttttactttttgtatttttctcacGAATATTTTGATTGAAC
GATTGTCCGCGTTGGCTGTTAGGCCATGCGATGGGTCCTCCATTACCTAT
TGGCGAGACGTGAGTGTCAATGCCATGGTCCTTGTACCAAGACATATGTT
CATCACCGATTGAGATATCATCCATTTCACGACC Coding sequence (CDS) from alignment at scaffold_63:802506..803589 >TCONS_00071823 ID=TCONS_00071823|Name=TCONS_00071823|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_63:802506..803589 (Clytia hemisphaerica)
TTAATGTTTAAATCTCCATTGATAGTCATACTTCTTGTCCAGATCTTTCT
CTTCTAACCATAACAATTCAGCTTGAAGTCGACACGAATCTGTCCCTACT
TCTTTCTTAAGTTTACGTGCCATGCAACCGTAACATAACGTGTCACCTTG
CCGGTTCTCGTTTACGTAATAACGGTGTCCGTTTACCTCGTCTTTACATT
TACGACATTCGATGATATTAACAGCGTTTGCGTTAAAATAATTTATACGC
TCTTCGTAAATTTCCTGATCTTCTCTCCGACCTGGTTTCTTATTCCTATT
GACCGGTTTCTCCCAGCGTTTATTAAAATATTGCAAAGCTAACTGGAATG
TGTTGTCGCTTTcgtatttatattttttactttttgtatttttctcacGA
ATATTTTGATTGAACGATTGTCCGCGTTGGCTGTTAGGCCATGCGATGGG
TCCTCCATTACCTATTGGCGAGACGTGAGTGTCAATGCCATGGTCCTTGT
ACCAAGACATATGTTCATCACCGATTGAGATATCATCCATTTCACGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071823-exon-scaffold_63-1491911889:802506..803589 | TCONS_00071823-exon-scaffold_63-1491911889:802506..803589 | Clytia hemisphaerica | exon |
| TCONS_00071823-exon-scaffold_63-1510915933:802506..803589 | TCONS_00071823-exon-scaffold_63-1510915933:802506..803589 | Clytia hemisphaerica | exon |
| TCONS_00071823-exon-scaffold_63-1575043694:802506..803589 | TCONS_00071823-exon-scaffold_63-1575043694:802506..803589 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:802506..803589 . |
Blast
The following BLAST results are available for this feature:
|
