TCONS_00071820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071820
Unique NameTCONS_00071820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071820 ID=TCONS_00071820|Name=TCONS_00071820|organism=Clytia hemisphaerica|type=transcript|length=632bp
TATCATTCAAATGCTAACtataaaacaaataaacaaactatataagaaca
taaggctttgatggcagaacaagttaagaatattttaaggcttaaaactc
aaaaaagttaagaaaatccgaaggcttaaaattttttgatgttcttatga
aTAAACAGTGTGTATTCCAAGTTTGTCACAGCACCGTGGTTCAATACCGA
ATTTCTGGTATGGTATGGTTAGGTATCTGATTTTGTTGTTAGTGAGTTTG
GAAAAATCTTCCACAAGTTTTTTGTAgtaaactctctctaattcgaacct
ctactagtCGAATCTATCTacaattcgaacaaaaatatttgtcccctaag
ctagaaattagtatacaaaatactttctgtaactcaaatctttctttaat
tcgaagaaaattctagGTCTCTTGAAGTTCAAcgttgaagatcgaattag
agagagtcgctCTTTCTAATATCAATATCAGCTCTCATCACAAATCTCTA
CAATAATATCAATAACAAGTAGATTATGAATATTTCAACTTCAGTTTAAG
TGCTGATGGGAAATGCATTTCAAGTCTAAGTTCAATTTATATATTCAAAA
GACCAGAAGATTTGAAACGTGTGAGCAGTATA
Run BLAST on NCBI

transcript from alignment at scaffold_63:699730..700361

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071820 ID=TCONS_00071820|Name=TCONS_00071820|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at scaffold_63:699730..700361 (Clytia hemisphaerica)
TATACTGCTCACACGTTTCAAATCTTCTGGTCTTTTGAATATATAAATTG
AACTTAGACTTGAAATGCATTTCCCATCAGCACTTAAACTGAAGTTGAAA
TATTCATAATCTACTTGTTATTGATATTATTGTAGAGATTTGTGATGAGA
GCTGATATTGATATTAGAAAGagcgactctctctaattcgatcttcaacg
TTGAACTTCAAGAGACctagaattttcttcgaattaaagaaagatttgag
ttacagaaagtattttgtatactaatttctagcttaggggacaaatattt
ttgttcgaattgtAGATAGATTCGactagtagaggttcgaattagagaga
gtttacTACAAAAAACTTGTGGAAGATTTTTCCAAACTCACTAACAACAA
AATCAGATACCTAACCATACCATACCAGAAATTCGGTATTGAACCACGGT
GCTGTGACAAACTTGGAATACACACTGTTTAttcataagaacatcaaaaa
attttaagccttcggattttcttaacttttttgagttttaagccttaaaa
tattcttaacttgttctgccatcaaagccttatgttcttatatagtttgt
ttatttgttttataGTTAGCATTTGAATGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044588XLOC_044588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071820-exon-scaffold_63-1491911889:699730..700361TCONS_00071820-exon-scaffold_63-1491911889:699730..700361Clytia hemisphaericaexon
TCONS_00071820-exon-scaffold_63-1510915933:699730..700361TCONS_00071820-exon-scaffold_63-1510915933:699730..700361Clytia hemisphaericaexon
TCONS_00071820-exon-scaffold_63-1575043694:699730..700361TCONS_00071820-exon-scaffold_63-1575043694:699730..700361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:699730..700361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167743	0.0817882	0.0949639	0	0	0.178755	0.431321	1.00949	0.424063	0.087545	0	0.167574	0.223122	0.579286	0.0476251	0.204436	0.0629622	0.0645342	0	0	0	0	0	0	0.630346	0.241101	0	0	0.0930911	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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