TCONS_00071818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071818
Unique NameTCONS_00071818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071818 ID=TCONS_00071818|Name=TCONS_00071818|organism=Clytia hemisphaerica|type=transcript|length=2231bp
TGTTTGTTGTGgctctttatttttttctcttcttatTCAAACAATAGAGT
AAAAAAGTCGACAACGTAGTGCAATCTTATAAAAAGGCAGAGCAAGGAAA
CCGAGAACATTTATTTCACCTCACTTGGATCTGCAGTGTAAAGATCAACA
ACTTGAAAAACAACATATCAACTCAACTCAACGTTGTTTTTTTAACATAT
ATTTGAAATCAAACAAATTTCTCAAATATCAAAGAACAAATATAGAACAA
GAagatttgtgtttttttggAGTGGAGAAAAGGTTCAAGGCAACCATATC
ATAACAAAGTATCAACGAGCACCGGATTTCAAACCAATATTCTCAATGAC
GATTATGGATATGACTGGCACCACCACGCCGCTGTCGCACCACGATATGG
TGATACAAAGTAGCCGACATGCCGTCCCTGGGGAGTACGATATCAAACCA
CTCGTTACAGCCCCACCGACTATCGGTGAATACACATCAGTCAACCAAAT
GGGTAGTCAACCACCACCGCAAACCAGTTTAGACTCTATGTCAGAAGGAT
CACCGAAATCAGCAAACTCACCAATGAAACCAAGGAATTATCAACACGCT
AAACCACCATACAGTTACATCTCACTCATCACAATGTCCATACAAAACTC
TGCGTCCAAAATGGTCACTTTAAGTGAGATTTACCAATTCATCATGGATT
TGTTTCCATACTACAGACAGAACCAACAGCGCTGGCAAAACTCAATCCGA
CACAGTTTATCATTCAATGATTGCTTCATCAAAGTGCCACGATCCCCCGA
CAAGCCCGGTAAAGGAAGCTTCTGGACACTTCATCCAGATGCTGGAAACA
TGTTCGAAAACGGATGTTATCTTCGCCGACAAAAACGATTTAAATCTGAT
CGCAAAGGAAACCCGATTCCACATTCATCTCGAGGACAAGATGACATGTC
GCCGTACGCTAAATACAGTCAATCGATACAAATGGGAAATTCTCCGAGAG
GTGGTTCTTCAGGACCTGTCGGTGTCCCAGCATTTTTACCAGGAACATAT
GGAGCTTACCGAGGACTTCATTCATTCAATCATCCATTCGCtattaagaa
cattataaatGCACCAGAACATGAGGGTGATTTCAGATATgctgatccaa
tgcattttccGTATCATCCATCAACATTTACTGCACCATTACCATACGGT
GCACCAGCAGGTAAAGAAGGACTATCAATACCACCAACCAGTactgaaag
ttttaatttgaaCACTTCTCTTATGAACCAATATTATCAGAACTCATGCA
TGGTTCCTAACAATACTGGACTTGCATAAAAACTTACtttattttgctga
aatttcatttttttttagatttttaaaaaaactttgtgaattttttttaa
acaattcttcgaattttttctttttttttcaaaaacattaattttaattt
atacatatttcattggtaaaattttaaaaaaggaaTTAGTTAGGTAATAT
TTTTTGAGATGCGTCTTCTAAAACTTCCAATTTTCGGaggttttattttt
caataattttgaattttctctgTCAGATAACGAAAATAGACAGCACATTT
TTTGGTTGCTAAGAagttaaaaatataaaactgtttttctaaaaGCCGTC
GTAACCAgagaactttaaaaaattgttttcgaggagtttttttttcaaaa
aaaatttgaaaattttaaaagaaattttaagttttttttctaaacgaGAA
AACTTTATTATAAAGAAAGGTTgtacatatattatatattatattgatAT
TACATGTTCGATAAATTACATATACATACATAAATACGTTGATAACACTA
AAAGCCATTTACAGAAAGAACATAttgaaacaaaatcaaacatttttttc
tttagtttttacttttattttggctttttcaaactttttttaaaggtctt
ttgttatttttgatcGTTAGGCCACTGCTTAGGGTTCAGTGTTGTCTAAC
GTTGAACAATAAGGGTTTTTTTGTAATATATATTACATGAAGTTGTACAT
ATTACCATATTACAGTCCTTTACTATTTATGATTAGTTATATACACTTAT
TATACGACAAAAGAAACAATAAACAAGGGCTCTcttgataaattaaaaaa
aacacttgtACATTTTTCTTAGCTGTTTTGGTATTTCAAGGGGCGGTTTT
TATTGGTAACCTTTACCTCCCCCAGTTTTCG
Run BLAST on NCBI

protein sequence of forkhead FoxA transcription factor

>TCONS_00071818-protein ID=TCONS_00071818-protein|Name=forkhead FoxA transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MTIMDMTGTTTPLSHHDMVIQSSRHAVPGEYDIKPLVTAPPTIGEYTSVN
QMGSQPPPQTSLDSMSEGSPKSANSPMKPRNYQHAKPPYSYISLITMSIQ
NSASKMVTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLSFNDCFIKVPRS
PDKPGKGSFWTLHPDAGNMFENGCYLRRQKRFKSDRKGNPIPHSSRGQDD
MSPYAKYSQSIQMGNSPRGGSSGPVGVPAFLPGTYGAYRGLHSFNHPFAI
KNIINAPEHEGDFRYADPMHFPYHPSTFTAPLPYGAPAGKEGLSIPPTST
ESFNLNTSLMNQYYQNSCMVPNNTGLA
Run BLAST on NCBI

transcript from alignment at scaffold_63:651462..653692

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071818 ID=TCONS_00071818|Name=TCONS_00071818|organism=Clytia hemisphaerica|type=transcript|length=2231bp|location=Sequence derived from alignment at scaffold_63:651462..653692 (Clytia hemisphaerica)
CGAAAACTGGGGGAGGTAAAGGTTACCAATAAAAACCGCCCCTTGAAATA
CCAAAACAGCTAAGAAAAATGTacaagtgttttttttaatttatcaagAG
AGCCCTTGTTTATTGTTTCTTTTGTCGTATAATAAGTGTATATAACTAAT
CATAAATAGTAAAGGACTGTAATATGGTAATATGTACAACTTCATGTAAT
ATATATTACAAAAAAACCCTTATTGTTCAACGTTAGACAACACTGAACCC
TAAGCAGTGGCCTAACgatcaaaaataacaaaagacctttaaaaaaagtt
tgaaaaagccaaaataaaagtaaaaactaaagaaaaaaatgtttgatttt
gtttcaaTATGTTCTTTCTGTAAATGGCTTTTAGTGTTATCAACGTATTT
ATGTATGTATATGTAATTTATCGAACATGTAATatcaatataatatataa
tatatgtacAACCTTTCTTTATAATAAAGTTTTCtcgtttagaaaaaaaa
cttaaaatttcttttaaaattttcaaattttttttgaaaaaaaaactcct
cgaaaacaattttttaaagttctcTGGTTACGACGGCttttagaaaaaca
gttttatatttttaactTCTTAGCAACCAAAAAATGTGCTGTCTATTTTC
GTTATCTGAcagagaaaattcaaaattattgaaaaataaaacctCCGAAA
ATTGGAAGTTTTAGAAGACGCATCTCAAAAAATATTACCTAACTAAttcc
ttttttaaaattttaccaatgaaatatgtataaattaaaattaatgtttt
tgaaaaaaaaagaaaaaattcgaagaattgtttaaaaaaaattcacaaag
tttttttaaaaatctaaaaaaaaatgaaatttcagcaaaataaaGTAAGT
TTTTATGCAAGTCCAGTATTGTTAGGAACCATGCATGAGTTCTGATAATA
TTGGTTCATAAGAGAAGTGttcaaattaaaactttcagtACTGGTTGGTG
GTATTGATAGTCCTTCTTTACCTGCTGGTGCACCGTATGGTAATGGTGCA
GTAAATGTTGATGGATGATACggaaaatgcattggatcagcATATCTGAA
ATCACCCTCATGTTCTGGTGCatttataatgttcttaataGCGAATGGAT
GATTGAATGAATGAAGTCCTCGGTAAGCTCCATATGTTCCTGGTAAAAAT
GCTGGGACACCGACAGGTCCTGAAGAACCACCTCTCGGAGAATTTCCCAT
TTGTATCGATTGACTGTATTTAGCGTACGGCGACATGTCATCTTGTCCTC
GAGATGAATGTGGAATCGGGTTTCCTTTGCGATCAGATTTAAATCGTTTT
TGTCGGCGAAGATAACATCCGTTTTCGAACATGTTTCCAGCATCTGGATG
AAGTGTCCAGAAGCTTCCTTTACCGGGCTTGTCGGGGGATCGTGGCACTT
TGATGAAGCAATCATTGAATGATAAACTGTGTCGGATTGAGTTTTGCCAG
CGCTGTTGGTTCTGTCTGTAGTATGGAAACAAATCCATGATGAATTGGTA
AATCTCACTTAAAGTGACCATTTTGGACGCAGAGTTTTGTATGGACATTG
TGATGAGTGAGATGTAACTGTATGGTGGTTTAGCGTGTTGATAATTCCTT
GGTTTCATTGGTGAGTTTGCTGATTTCGGTGATCCTTCTGACATAGAGTC
TAAACTGGTTTGCGGTGGTGGTTGACTACCCATTTGGTTGACTGATGTGT
ATTCACCGATAGTCGGTGGGGCTGTAACGAGTGGTTTGATATCGTACTCC
CCAGGGACGGCATGTCGGCTACTTTGTATCACCATATCGTGGTGCGACAG
CGGCGTGGTGGTGCCAGTCATATCCATAATCGTCATTGAGAATATTGGTT
TGAAATCCGGTGCTCGTTGATACTTTGTTATGATATGGTTGCCTTGAACC
TTTTCTCCACTccaaaaaaacacaaatctTCTTGTTCTATATTTGTTCTT
TGATATTTGAGAAATTTGTTTGATTTCAAATATATGTTAAAAAAACAACG
TTGAGTTGAGTTGATATGTTGTTTTTCAAGTTGTTGATCTTTACACTGCA
GATCCAAGTGAGGTGAAATAAATGTTCTCGGTTTCCTTGCTCTGCCTTTT
TATAAGATTGCACTACGTTGTCGACTTTTTTACTCTATTGTTTGAataag
aagagaaaaaaataaagagcCACAACAAACA

Coding sequence (CDS) from alignment at scaffold_63:651462..653692

>TCONS_00071818 ID=TCONS_00071818|Name=TCONS_00071818|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_63:651462..653692 (Clytia hemisphaerica)
TTATGCAAGTCCAGTATTGTTAGGAACCATGCATGAGTTCTGATAATATT
GGTTCATAAGAGAAGTGttcaaattaaaactttcagtACTGGTTGGTGGT
ATTGATAGTCCTTCTTTACCTGCTGGTGCACCGTATGGTAATGGTGCAGT
AAATGTTGATGGATGATACggaaaatgcattggatcagcATATCTGAAAT
CACCCTCATGTTCTGGTGCatttataatgttcttaataGCGAATGGATGA
TTGAATGAATGAAGTCCTCGGTAAGCTCCATATGTTCCTGGTAAAAATGC
TGGGACACCGACAGGTCCTGAAGAACCACCTCTCGGAGAATTTCCCATTT
GTATCGATTGACTGTATTTAGCGTACGGCGACATGTCATCTTGTCCTCGA
GATGAATGTGGAATCGGGTTTCCTTTGCGATCAGATTTAAATCGTTTTTG
TCGGCGAAGATAACATCCGTTTTCGAACATGTTTCCAGCATCTGGATGAA
GTGTCCAGAAGCTTCCTTTACCGGGCTTGTCGGGGGATCGTGGCACTTTG
ATGAAGCAATCATTGAATGATAAACTGTGTCGGATTGAGTTTTGCCAGCG
CTGTTGGTTCTGTCTGTAGTATGGAAACAAATCCATGATGAATTGGTAAA
TCTCACTTAAAGTGACCATTTTGGACGCAGAGTTTTGTATGGACATTGTG
ATGAGTGAGATGTAACTGTATGGTGGTTTAGCGTGTTGATAATTCCTTGG
TTTCATTGGTGAGTTTGCTGATTTCGGTGATCCTTCTGACATAGAGTCTA
AACTGGTTTGCGGTGGTGGTTGACTACCCATTTGGTTGACTGATGTGTAT
TCACCGATAGTCGGTGGGGCTGTAACGAGTGGTTTGATATCGTACTCCCC
AGGGACGGCATGTCGGCTACTTTGTATCACCATATCGTGGTGCGACAGCG
GCGTGGTGGTGCCAGTCATATCCATAATCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044586XLOC_044586Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
forkhead FoxA transcription factorTCONS_00071818-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071818-exon-scaffold_63-1491911889:651462..653692TCONS_00071818-exon-scaffold_63-1491911889:651462..653692Clytia hemisphaericaexon
TCONS_00071818-exon-scaffold_63-1510915933:651462..653692TCONS_00071818-exon-scaffold_63-1510915933:651462..653692Clytia hemisphaericaexon
TCONS_00071818-exon-scaffold_63-1575043694:651462..653692TCONS_00071818-exon-scaffold_63-1575043694:651462..653692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:651462..653692 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.01711 tpm) - - (103.283 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0175459	0.01711	0.0198663	0.0194361	103.283	85.0745	29.0998	30.3473	7.62935	8.4429	5.24401	4.96632	30.0015	25.449	12.8325	16.2945	18.0978	17.3616	59.3122	42.9778	13.334	14.9439	7.84592	12.4189	17.0863	19.4018	0.505236	0.385144	5.23865	5.73419
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Expect = 8.70e-61 / Id = 86.11SequenceFOXA2
Match NameE-valueIdentityDescription
FOXA28.697e-6186.11Hepatocyte nuclear factor 3-beta OS=Homo sapiens G... [more]
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