Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071817 ID=TCONS_00071817|Name=TCONS_00071817|organism=Clytia hemisphaerica|type=transcript|length=1792bp
GGACGAGTAGGTAAAATTAAAGTGGCTCATATATCTCAAATGCTAAGCCT
TTCCAATAACTCGTAACCTTTAGAACCTTAAAACTTAGGTTGATGTTACC
TTTAAAACGTCTTGCATCGTCCGAATTATCctgatttattttcaaatatt
ccaTTTTGTCTGAANAGTTGATGTTACCTTCAAAACGTCTTGCATCGTCC
GAATTATCctgatttattttcaaatagtgcattttgtctgaaaaagGGCT
AAACTCACTTTCGGTCTAAATGTAAATTTTAAGGTGGCATGCGTAGGGAG
ATTCACTGGCCTTTGCTCAGTAAAACTTGATGTCTAATATCTTTATTCTG
AGACTTCATTTGATTGTTCTCTTCATACTTTGAACAAGTAACTATCCAGC
TttaatttccaattttggaCCTTCTTCAGGAGCTTGACTCGTTTATTTTA
GAGGGGTCTGCTGGGGGCCCTCTTATGTAGAAAGCTATGCTCTATCTCAT
CTGGTTTAAAGAGAAACTAGAACTAGAACCCCTTCTTTTGTAAATCTTAT
AGGAAAACAAGACCGGAGGTCGGTCGGAtcgaaaaacaaatgaaaataat
aaagatATAACAAAACTTCGATATCTGCCTGATATAACCCGATTTAAAAA
CGGAGATATAATCGCAACCTTAATGAACACGCCGTCCTGCGCCGTCACCA
TTTTGTTGCTTTTACTTACTTTAAAGAGGCAAAAAccatttaatttaatt
ttttttttaatttaaactttttttgtcaTCCTCATGGTATTATTATGCGT
CTTTCAATTGAGTCAAAGTAACGGAAACGATGGCCGGTTAGGACCGTGTT
ATCTTACTTATCTTTTGTCACGCGGTCGAAACAGTCATGCGATTGCGGTC
ACACGTTCTAGCACGTGCTTTCTAATTACTTTGAACTCTTACTTTTGAgt
gttttcaatcttttttgttAACGACGAAAGGTCAGGTCACATCGTCATCG
CTCTCAGTTCTTTAGAATTTCCATTGCGGGTATCCTTGCATAGACAACAT
TGACTTTAATTTTCTCTCTTGAAATTCTGATTTTCCTCTAAGGCTCTTTT
TCAGATCCTTTTTCAGGAACTCAAATATCACTCTCGGACCAAGTTGtatt
aaatcaaatttaaataAGTAGAGGATTGACAGCATTAATCTTTTATTTTA
GACGCTTCTTTCTTTGTTTCCATGCCACACCTACACAAATTAAAAATTCT
TGGTAGCTATGCTGCCACGTTGTTTATCATTGTATGCCAAAAAAATGACA
TGGTTGTAAACTAACCAATCACAAACAATTTCTAAAATATCTgaagaaaa
ccgttttttgacATCGGTCAGGACAGCTAGCAGTTAATTGTTTTAAACCA
ATCTGGTCGTCACATCATTTTTGTCTTGTAATAGCTTCCTTCTAATGATA
TGTTTTACGTGATAAATAAATATCACTATTGGcaataatatttttaacat
tGGAATGGCACTGACTGAATTTGCTAAAATAATTCTTGCCCCATCGATAT
GCTATGTGTATTGTTTTCAGGTCACTAGATGGTAATAATCATCATGAAGA
CGTAAAAGGGAGAACCCAATCTTCTGCTAGTGATGGatgtaatcaaattt
tttataACCCCTATGTCACGGTTCCACAGAAAAATTGGGAAGAAGCTTCA
TCGGGGCTGTTAGacaggttttttttatttaattcaaaaaatgatcaaaa
aaattattcgtTTAACGAATGTGTTAGCTCCAATTTTAAGCC Run BLAST on NCBI transcript from alignment at scaffold_63:574174..575965 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071817 ID=TCONS_00071817|Name=TCONS_00071817|organism=Clytia hemisphaerica|type=transcript|length=1792bp|location=Sequence derived from alignment at scaffold_63:574174..575965 (Clytia hemisphaerica)
GGCTTAAAATTGGAGCTAACACATTCGTTAAacgaataatttttttgatc
attttttgaattaaataaaaaaaacctgtCTAACAGCCCCGATGAAGCTT
CTTCCCAATTTTTCTGTGGAACCGTGACATAGGGGTtataaaaaatttga
ttacatCCATCACTAGCAGAAGATTGGGTTCTCCCTTTTACGTCTTCATG
ATGATTATTACCATCTAGTGACCTGAAAACAATACACATAGCATATCGAT
GGGGCAAGAATTATTTTAGCAAATTCAGTCAGTGCCATTCCaatgttaaa
aatattattgCCAATAGTGATATTTATTTATCACGTAAAACATATCATTA
GAAGGAAGCTATTACAAGACAAAAATGATGTGACGACCAGATTGGTTTAA
AACAATTAACTGCTAGCTGTCCTGACCGATgtcaaaaaacggttttcttc
AGATATTTTAGAAATTGTTTGTGATTGGTTAGTTTACAACCATGTCATTT
TTTTGGCATACAATGATAAACAACGTGGCAGCATAGCTACCAAGAATTTT
TAATTTGTGTAGGTGTGGCATGGAAACAAAGAAAGAAGCGTCTAAAATAA
AAGATTAATGCTGTCAATCCTCTACTtatttaaatttgatttaataCAAC
TTGGTCCGAGAGTGATATTTGAGTTCCTGAAAAAGGATCTGAAAAAGAGC
CTTAGAGGAAAATCAGAATTTCAAGAGAGAAAATTAAAGTCAATGTTGTC
TATGCAAGGATACCCGCAATGGAAATTCTAAAGAACTGAGAGCGATGACG
ATGTGACCTGACCTTTCGTCGTTaacaaaaaagattgaaaacacTCAAAA
GTAAGAGTTCAAAGTAATTAGAAAGCACGTGCTAGAACGTGTGACCGCAA
TCGCATGACTGTTTCGACCGCGTGACAAAAGATAAGTAAGATAACACGGT
CCTAACCGGCCATCGTTTCCGTTACTTTGACTCAATTGAAAGACGCATAA
TAATACCATGAGGAtgacaaaaaaagtttaaattaaaaaaaaaattaaat
taaatggTTTTTGCCTCTTTAAAGTAAGTAAAAGCAACAAAATGGTGACG
GCGCAGGACGGCGTGTTCATTAAGGTTGCGATTATATCTCCGTTTTTAAA
TCGGGTTATATCAGGCAGATATCGAAGTTTTGTTATatctttattatttt
catttgtttttcgaTCCGACCGACCTCCGGTCTTGTTTTCCTATAAGATT
TACAAAAGAAGGGGTTCTAGTTCTAGTTTCTCTTTAAACCAGATGAGATA
GAGCATAGCTTTCTACATAAGAGGGCCCCCAGCAGACCCCTCTAAAATAA
ACGAGTCAAGCTCCTGAAGAAGGtccaaaattggaaattaaAGCTGGATA
GTTACTTGTTCAAAGTATGAAGAGAACAATCAAATGAAGTCTCAGAATAA
AGATATTAGACATCAAGTTTTACTGAGCAAAGGCCAGTGAATCTCCCTAC
GCATGCCACCTTAAAATTTACATTTAGACCGAAAGTGAGTTTAGCCcttt
ttcagacaaaatgcactatttgaaaataaatcagGATAATTCGGACGATG
CAAGACGTTTTGAAGGTAACATCAACTNTTCAGACAAAAtggaatatttg
aaaataaatcagGATAATTCGGACGATGCAAGACGTTTTAAAGGTAACAT
CAACCTAAGTTTTAAGGTTCTAAAGGTTACGAGTTATTGGAAAGGCTTAG
CATTTGAGATATATGAGCCACTTTAATTTTACCTACTCGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071817-exon-scaffold_63-1491911889:574174..575965 | TCONS_00071817-exon-scaffold_63-1491911889:574174..575965 | Clytia hemisphaerica | exon |
| TCONS_00071817-exon-scaffold_63-1510915933:574174..575965 | TCONS_00071817-exon-scaffold_63-1510915933:574174..575965 | Clytia hemisphaerica | exon |
| TCONS_00071817-exon-scaffold_63-1575043694:574174..575965 | TCONS_00071817-exon-scaffold_63-1575043694:574174..575965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:574174..575965 . |
Blast
The following BLAST results are available for this feature:
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