TCONS_00071809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071809
Unique NameTCONS_00071809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071809 ID=TCONS_00071809|Name=TCONS_00071809|organism=Clytia hemisphaerica|type=transcript|length=819bp
agtctatttttgccttttttatcAACCTCACACTATTTTTGTAACGGATC
ACATATACCGAGCTACCGATGTCCTTTGATGAACAAAAGGTTTAAAGTCG
ACATCAACCCAAAGAAAGATATCAATGTTTATGAGAcagataaacaaaaa
agaagatttcCAGGACTTCTAAGGGCCAAAGAAATGCCTGGATTCTTTCA
AATCTGAAACAACCCAAAAGCCATTCAGTGTGAGTCGTGTGAAGTTTGGT
ACCATGCCCACATGTGGCAAAGACCTAGAGCTAGTGCATGAATGGCTTGA
CAAAGTAAGAAATGGAACAGGTGCCAATAAACTGGGTTTGTCGAGAATGT
GAAGAAAAAGATATCGAATATTgttgtgaaagtttgaaattttgttgcaa
gagtttgaaatattgttgtaagaaattGTTGTCGTTGTGGTCGCTCAGGG
CTCCgatattttcaaaagtctttaCCCTAATTTAATACTGCGGGTATATT
TTTTTGGattcttctttgtctcaaatacCACTCCTACCATTTGAAAGTGC
TATTTCTGCGTTGGTTATTACAATTTATGAAGCCAGAGGTTTATTTTAAT
ATCTAATTTGCTTTTttcgcttatttaatttttatatttattatttctaG
TTATTATTCTATATAAATAATTGAGTAAGTTTCTGTGAAAGTTgagaatg
ttaaaaaaaatcttagCTTTGTTTGAGACAAAAGGAtatcaagaaaaaaa
tgacgAATTAGAGATGCCGAACGAACTTTTAATTTTCttgtacagcacct
gaccccgagaatgtaggtg
Run BLAST on NCBI

transcript from alignment at scaffold_63:109617..110435

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071809 ID=TCONS_00071809|Name=TCONS_00071809|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_63:109617..110435 (Clytia hemisphaerica)
cacctacattctcggggtcaggtgctgtacaaGAAAATTAAAAGTTCGTT
CGGCATCTCTAATTcgtcatttttttcttgataTCCTTTTGTCTCAAACA
AAGctaagattttttttaacattctcAACTTTCACAGAAACTTACTCAAT
TATTTATATAGAATAATAACtagaaataataaatataaaaattaaataag
cgaaAAAAGCAAATTAGATATTAAAATAAACCTCTGGCTTCATAAATTGT
AATAACCAACGCAGAAATAGCACTTTCAAATGGTAGGAGTGgtatttgag
acaaagaagaatCCAAAAAAATATACCCGCAGTATTAAATTAGGGtaaag
acttttgaaaatatcGGAGCCCTGAGCGACCACAACGACAACaatttctt
acaacaatatttcaaactcttgcaacaaaatttcaaactttcacaacAAT
ATTCGATATCTTTTTCTTCACATTCTCGACAAACCCAGTTTATTGGCACC
TGTTCCATTTCTTACTTTGTCAAGCCATTCATGCACTAGCTCTAGGTCTT
TGCCACATGTGGGCATGGTACCAAACTTCACACGACTCACACTGAATGGC
TTTTGGGTTGTTTCAGATTTGAAAGAATCCAGGCATTTCTTTGGCCCTTA
GAAGTCCTGgaaatcttcttttttgtttatctgTCTCATAAACATTGATA
TCTTTCTTTGGGTTGATGTCGACTTTAAACCTTTTGTTCATCAAAGGACA
TCGGTAGCTCGGTATATGTGATCCGTTACAAAAATAGTGTGAGGTTgata
aaaaaggcaaaaatagact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044577XLOC_044577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071809-exon-scaffold_63-1491911889:109617..110435TCONS_00071809-exon-scaffold_63-1491911889:109617..110435Clytia hemisphaericaexon
TCONS_00071809-exon-scaffold_63-1510915933:109617..110435TCONS_00071809-exon-scaffold_63-1510915933:109617..110435Clytia hemisphaericaexon
TCONS_00071809-exon-scaffold_63-1575043694:109617..110435TCONS_00071809-exon-scaffold_63-1575043694:109617..110435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:109617..110435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (5.64713 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11632	0.113431	0.197556	0.128852	5.64713	2.54111	1.42071	1.54006	0.392084	0.485659	0.589241	0.193672	0.232083	0.321361	0.165127	0.141765	0.523928	0.268505	0.123651	0.32348	0.899722	0.246855	0	0.242507	0.999105	1.00314	0.956991	0.765995	0.19366	0.460387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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