TCONS_00071807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071807
Unique NameTCONS_00071807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071807 ID=TCONS_00071807|Name=TCONS_00071807|organism=Clytia hemisphaerica|type=transcript|length=383bp
GTTTCCAAGGATGGTTTTAAACTTATCCAACGGCAAGATTTCCTCTGCAG
tgactttttgttgttgtttgggtTTTTGCATACTTTTCTCTGGGTGTTTA
CAATTAACATGGCGTGTCATCCCACGTTTTGATAAACAAACTTTTGGACA
ATACAAACATTTAAACGAAGTGTCTTTCTTTTCATCGATCTGGAACTCCT
CAGAAGCAAGATAACTCTCCAACTCTTTATCATTAAAGTAATCAACTTCA
CTCTCACTGGCATCAAGAGTACTGTTCGCAGCcatcttgaaaattttatg
CACTCTCTGTACGGCCGTCTAAAAATACTAACATTTTCGAGCGACGGCCC
GTGTTGCCGGACTAAGGTTTTTCCTATGACTAT
Run BLAST on NCBI

transcript from alignment at scaffold_63:88222..88604

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071807 ID=TCONS_00071807|Name=TCONS_00071807|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at scaffold_63:88222..88604 (Clytia hemisphaerica)
ATAGTCATAGGAAAAACCTTAGTCCGGCAACACGGGCCGTCGCTCGAAAA
TGTTAGTATTTTTAGACGGCCGTACAGAGAGTGcataaaattttcaagat
gGCTGCGAACAGTACTCTTGATGCCAGTGAGAGTGAAGTTGATTACTTTA
ATGATAAAGAGTTGGAGAGTTATCTTGCTTCTGAGGAGTTCCAGATCGAT
GAAAAGAAAGACACTTCGTTTAAATGTTTGTATTGTCCAAAAGTTTGTTT
ATCAAAACGTGGGATGACACGCCATGTTAATTGTAAACACCCAGAGAAAA
GTATGCAAAAacccaaacaacaacaaaaagtcaCTGCAGAGGAAATCTTG
CCGTTGGATAAGTTTAAAACCATCCTTGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044575XLOC_044575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071807-exon-scaffold_63-1491911889:88222..88604TCONS_00071807-exon-scaffold_63-1491911889:88222..88604Clytia hemisphaericaexon
TCONS_00071807-exon-scaffold_63-1510915933:88222..88604TCONS_00071807-exon-scaffold_63-1510915933:88222..88604Clytia hemisphaericaexon
TCONS_00071807-exon-scaffold_63-1575043694:88222..88604TCONS_00071807-exon-scaffold_63-1575043694:88222..88604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:88222..88604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.49578	1.01325	1.17387	3.15399	1.39785	1.73461	2.5636	1.46278	0.993277	1.28583	0.656163	1.63805	1.05901	1.70301	1.87566	1.41407	1.4241	3.63549	1.80855	0.350799	1.80639	0.802206	0	0	0.988054	0.537949	0.677704	1.50027	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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