TCONS_00071801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071801
Unique NameTCONS_00071801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071801 ID=TCONS_00071801|Name=TCONS_00071801|organism=Clytia hemisphaerica|type=transcript|length=253bp
TTCCAAAGTTGATTGGGGGTCAAATTTCCTTCTGTTTTCAAAGGATGGTT
ATTCCAGGTACTTGCAAACTCATTTAAAGGCCTGTTGATTCGTGGAATGA
AAATGTTGTGCAAACAAAACAAATGGAGCTCGTTATCCGGATCAAGATAA
TCATCTGCTTCCATTGATCTGAACAAATCTATAAAAAGGATAGCAACATA
CACTTTTACGTCAACCCATAACCTTTCAATGCGTTGGTTATGGACTGACC
TAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:65106..65358

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071801 ID=TCONS_00071801|Name=TCONS_00071801|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at scaffold_63:65106..65358 (Clytia hemisphaerica)
GTAGGTCAGTCCATAACCAACGCATTGAAAGGTTATGGGTTGACGTAAAA
GTGTATGTTGCTATCCTTTTTATAGATTTGTTCAGATCAATGGAAGCAGA
TGATTATCTTGATCCGGATAACGAGCTCCATTTGTTTTGTTTGCACAACA
TTTTCATTCCACGAATCAACAGGCCTTTAAATGAGTTTGCAAGTACCTGG
AATAACCATCCTTTGAAAACAGAAGGAAATTTGACCCCCAATCAACTTTG
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044569XLOC_044569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071801-exon-scaffold_63-1491911889:65106..65358TCONS_00071801-exon-scaffold_63-1491911889:65106..65358Clytia hemisphaericaexon
TCONS_00071801-exon-scaffold_63-1510915933:65106..65358TCONS_00071801-exon-scaffold_63-1510915933:65106..65358Clytia hemisphaericaexon
TCONS_00071801-exon-scaffold_63-1575043694:65106..65358TCONS_00071801-exon-scaffold_63-1575043694:65106..65358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:65106..65358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.42623	0	0	3.94468	2.51856	0	1.76036	2.46494	6.86976	4.4453	1.46108	1.9454	2.02032	2.07622	0	1.64691	1.12535	0	1.62692	0.707042	0	0.838471	3.04917	0	0	2.00546	0	0	3.30783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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