TCONS_00071799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071799
Unique NameTCONS_00071799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071799 ID=TCONS_00071799|Name=TCONS_00071799|organism=Clytia hemisphaerica|type=transcript|length=309bp
CCTGTGTACAAAAACAAAGGGGACAAGAgcgtggtaaaaaattatagacc
agtgtctcttctgcctatttttggaaaaatctttgaaaaattgcatCTTT
GACTCCGTCTACACCTATTTCGAAAACAACAATCTTTTCACAAATTCCCA
GTCTGGATTCCGCAAGGGTGACTCTTGTGTGTCTCAGCTGTTATCCATAA
CACATAACATCCTGAGTGGTTTTGATGTTGATCCACCCCTAGATACTCGT
GGAGTGTTCCTTgatatttccaaagcttttgacaGAGTTTGGCACGATGG
TTTAATTNN
Run BLAST on NCBI

transcript from alignment at scaffold_63:4816..5124

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071799 ID=TCONS_00071799|Name=TCONS_00071799|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at scaffold_63:4816..5124 (Clytia hemisphaerica)
NNAATTAAACCATCGTGCCAAACTCtgtcaaaagctttggaaatatcAAG
GAACACTCCACGAGTATCTAGGGGTGGATCAACATCAAAACCACTCAGGA
TGTTATGTGTTATGGATAACAGCTGAGACACACAAGAGTCACCCTTGCGG
AATCCAGACTGGGAATTTGTGAAAAGATTGTTGTTTTCGAAATAGGTGTA
GACGGAGTCAAAGatgcaatttttcaaagatttttccaaaaataggcaga
agagacactggtctataattttttaccacgcTCTTGTCCCCTTTGTTTTT
GTACACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044567XLOC_044567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071799-exon-scaffold_63-1491911889:4816..5124TCONS_00071799-exon-scaffold_63-1491911889:4816..5124Clytia hemisphaericaexon
TCONS_00071799-exon-scaffold_63-1510915933:4816..5124TCONS_00071799-exon-scaffold_63-1510915933:4816..5124Clytia hemisphaericaexon
TCONS_00071799-exon-scaffold_63-1575043694:4816..5124TCONS_00071799-exon-scaffold_63-1575043694:4816..5124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:4816..5124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57836	1.03704	2.82701	2.90394	6.07059	3.30067	3.29478	7.26757	2.57764	3.35913	1.84649	1.57325	1.65869	1.29106	1.58945	0.278789	1.66364	3.02112	2.86078	2.53936	1.0036	2.19249	2.69672	1.39066	5.81651	4.05595	0	0	0.957108	1.3326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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