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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071796 ID=TCONS_00071796|Name=TCONS_00071796|organism=Clytia hemisphaerica|type=transcript|length=2895bp
TAGGGTTTATCAGGAGCGTTTGAGCTTTATGATttgattttaaaggtttt
gtttttgaataagagtgatatcgtttgcttactcatcatttttaattcac
aagcttgttcacattggattgacacggatgtggaacaAGATTGGTCATAC
Tgaggaagagaaaaacatttttgtttgtatcagcataatataacaatagg
gagacactgtcctggtatgaaatatgtgtctgatatgaaacgggaacact
tatgtaaaaagaaaacctttaagtgaaaatttgataacCATGATAGAAAT
TATAGACTCCTGTTTTGAACTATTTGACTTTTGCTTTCTTTTACATCAAG
GATGGGTTCTTAGAGTATTTAATTAAAAATAACTTAGAAAAAGAGTCATC
CATTGACTCTTATTCTCTAAAACCATGCCAAACATACCTGATCAGCTCCC
GTCATGCAATGGGCATTATTCACATCACATGACTAAACACGTGACATCAC
GAATAACGTCATCATCAACAGCCAATCAAAACATGGAAGAATTTATGATA
AGCATTAGAAAAGATGCTGAAGCAGCAACGGCGCTAGCTGAACGTTTAAA
ACCTGATTTGGTGAAAGGCTTTGTGGATATCATTGAAAAATGTAATGGCT
GTTTGATAACATCTGGAATAGGTAAATCAGGCATTGTTGCTGAAAGGATG
TCAAGATCATTATCATCTACAGGGACACCTGCTCACTATGTACACGGTGC
TGAATGGACACACGGCGATCTAGGTAAAGCAAGACGTGGCGACGTTTGCG
TGTTCTTCTCGCATAGCGGTAATACACGTGAATGCATATTCGCGGCTTCC
CACTTACGTTTACGTGGAGTACATATTTTATCTGTCATTGGGCATGATGA
TTGCAAGTTAGCTGAGAGTAGTGATGCATTCATTTCTTATGAATTGGAAA
ACGATCTTGAAGAACCAATAGGAGGCGTTCCAACCACGAGTGTAGTTCTT
CAGGAGATGATAATTAATGCAGTTGTTTGTGAATTAATAACACGAAAACG
ATTCAGTAAGATCGAGTTTGCAAGAAACCATCCAGGTGGGTCACTTGGTG
TCAAACTTTGTCAGCCCTCTATTGATATGAATGATGAGAACCAATGAAAT
CTATTTATTTCTAttctcagctggcacacaacgttgttctAACGTTATAA
CCCGAGGGGGGtatttaggcaaatggagggtacgatatgcaccgccctta
agggtaccttttttggatttccaaagtctcgctaagggtcgagaaaatca
gaaaatcaaatttcagtcccactaagggtaggagaaataggaaaattcca
actttttaccccaagaaagatcgaaatttggtcaaaattggtcaaatttg
taagggttgtaaaattcacaaaattttcctttgttttctcctttttagtc
ccggtaatggtctgagggtcgaaagtcgggcggcaccccctgtaagctcg
caaccctagtaccccggGCGTTATAAGGACGTTGTGatcattagataaac
gttaaacaGACGtattgtgccagctgggatacaTAGTATAGTTGAcgctt
ttttaattcaattttcaaggagAGATAGATTtccatcgaataagagagcg
tatCGAATCGTTTGccagagtttcttgttgacggtgactttcaatatcat
TGAATATTAATGGAGCATATTTAATAGTgaaatgtcgaattagagagcct
CGGCTGTATGTTATCTCCAACGATTTTAGGAATATACACAATTTGTCTTT
GGCATATTTACAATCTTTAGGGAGTGCATTGGGGGTTTTCGtaaccctta
aagagacttttgAGGATGTAAAAATGGAATTCTTATACCCTCGCaaatac
ccggcacccattttttCCTAAAAGCCCTCTCCCCTAGCTTACGTATTCTT
ACTCAATTTTATTGGTTATTGGAGGGGTACAAATCTTTGAATTCAATCAT
GTTCATTATTCAATCTATGAAGCACTAAAATAGacaacaaattattttct
ttcttagCTAGAAAAGCACAATTTTCATAGACAATTTGATAggatatttt
gtattttgtgcaggaaatttccaaaatttataaCTTTTATTATGGTGGTG
TATTTATTTATTAATATAATATGTGCAAAATATTATCTCTTTAAGGCTGa
taaattcaattttgaaatacaaatttcatttaatatatacaatttaacaa
tttttaCAAAGTTAGAAACGTactgaaatgaaaataagagTAAAATCAAG
tgcaaactgctcaaaatgaagacaagacaagaaacaaattttacaaattt
cacgGACATctcaaaaatacctttaaaggtCAATTGTTTTTGGACAAATA
CTGTATAACACGGCTTCTAAAACTTTCTAAAActaaatctaaaagtttta
cttttgtagatcgaaaaacaaaatttatggTGCGAGACATTTCGGTGAGT
GGCACGTCTTTATTATGGAAATTTTCTTAAATACATGCCCAGAAAGAATG
TTAGTCTTACAAGGGTGTTACAATTTCATTAGAAATTTACTATACTTTAG
TCACAAATTTTCGAGATATTACAAATACAAACAGTATAGGCCATTTTACA
GTAAACGCAATTCGTAATGGGTGAACAAGATTTTGCGAGAAAAAAAACGA
CTTCTTATTGGTCCAAGATTTCTGAGATTTTTGAGACCTACAGGAATTGG
TTATAAAAACGCAATTAAGTCCTGATTAACCATGATTCATTGCAACTGCA
AAATTGCCTatcataggccatttcacattcgtaaagcgtaatgggtaatt
aGGACCACTGCACGCCAATGACGACTTtttattggtccaaagttt Run BLAST on NCBI transcript from alignment at scaffold_63:1200441..1206915- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071796 ID=TCONS_00071796|Name=TCONS_00071796|organism=Clytia hemisphaerica|type=transcript|length=6475bp|location=Sequence derived from alignment at scaffold_63:1200441..1206915- (Clytia hemisphaerica)
TAGGGTTTATCAGGAGCGTTTGAGCTTTATGATTTGATTTTAAAGGTTTT
GTTTTTGAATAAGAGTGATATCGTTTGCTTACTCATCATTTTTAATTCAC
AAGCTTGTTCACATTGGATTGACACGGATGTGGAACAAGATTGGTCATAC
TGAGGAAGAGAAAAACATTTTTGTTTGTATCAGCATAATATAACAATAGG
GAGACACTGTCCTGGTATGAAATATGTGTCTGATATGAAACGGGAACACT
TATGTAAAAAGAAAACCTTTAAGTGAAAATTTGATAACCATGATAGAAAT
TATAGACTCCTGTTTTGAACTATTTGACTTTTGCTTTCTTTTACATCAAG
GATGGGTTCTTAGAGTATTTAATTAAAAATAACTTAGAAAAAGAGTCATC
CATTGACTCTTATTCTCTAAAACCATGCCAAACATACCTGATCAGCTCCC
GTCATGCAATGGGCATTATTCACATCACATGACTAAACACGTGACATCAC
GAATAACGTCATCATCAACAGCCAATCAAAACATGGAAGAATTTATGATA
AGCATTAGAAAAGATGCTGAAGCAGCAACGGCGCTAGCTGAACGTTTAAA
ACCTGATTTGGTGAAAGGCTTTGTGGATATCATTGAAAAATGTAATGGCT
GTTTGATAACATCTGGAATAGGTAAGCTGTTCGATATGTCCTTCAATTTA
AGGCATTCAATTTAACTGGCAGTAAGTTTAATCTCTTGGTATACCCCTGT
CGCAGTGCCGTTTGAAACCCCTTTTACATTTTCTAGATTCGACAAAGAAA
AACTAGTAATTAAAACTTTCGTTGGCATGGCTGATTTGTATCTTTGGTGA
ATAGAGATCTCTAAAAAGATATGCCTCCCTTTCAAAGCAACTGACTGAGG
TTGCCCCTCCAATAAATTCCTATTGGTTGATGTTGGTTAATTGTTTATAC
ATATCTGTAGTTGACGAACAGAGTTCATTTGACTTTTCATGGGTTTCTTA
CCCTTAAAGGGACCCAAAAAGGGGAAAATCTTGACCCTTGGAGAGATTAT
TTTGACTTTCTGTTGCTTTTTGTAAGCCTTTAGAATCTTTTATAATATTT
ATACAGGTAAATCAGGCATTGTTGCTGAAAGGATGTCAAGATCATTATCA
TCTACAGGGACACCTGCTCACTATGTACACGGTGCTGAATGGACACACGG
CGATCTAGGTAAAAAATCTCTGCTACATAAAATCATAATATTTGTCATAA
TATTTCATAAGAAAGAGAGTTCCCTGCAAAATTTTAAAACACAGCAAATA
TTCCCAAAAATCTCAATATATTTTGAACTTTCTTGTACTCCCTATTATTG
TGATTATAATTCGTATTGAATATTCAAATACCCTTTTTTCTCCAGTGCAA
AACCCCCCCAAATGTATACTAGCCTATTTAGGGTTCTCGATTTATTACAT
GATATTTTTTTACGTTATTGCAGTAATCAATTTTCTATGGCTGAGCACTT
TTTTGCGAATTGAGATTATGATTATAAAAAAGCAAAATTTAACTTTCCAT
TTGCCTATGACCTAGATTAGGGGTAGAAACCAATTAAGTAGTCAGACGGC
TGAGAAGTAAGTGTGAGTCGGTAGATATAAGTTTGGCATGACATTATGGC
TAATCCTCGAATAAGAAGTTTTGGGGAAAATTTGTCCCGATAAATACAAT
ATTAGTATAAATAAGTGAGGATCGCCTACAACCATAACTGCAGGGAGGGA
GGGAGGTAAAAAATATTTCATCCTGTCAGCTTTCAGTTAGAGCATCGACT
TGAACAGGGAGTTGCGATAGCCATTATGAACATGGCGTCACGTGGTTATT
AGCAAAGTAGACTCAGTTGGCAGAGGGCGGCCACCCAGCAATTCCAATAC
TGTGGCGCTTATCAAATAAAAGTTAAACCACGATTTAACCTGTGTTAAAT
CCAAAACAATGGAAAAAAGTTCTGAAATTCCCAAGTCAATTGAATGATGA
GAAAATAAGTTTTTTTTAACTTTTTCTCGAAGGGAAATCTGCACATTATT
TGTGCACCCCCCCCCTTTAAATTGAATTGATAAAAAGCTGTAACAAAGCA
CGACATAGGCGAAGCGAGATACCCTGCAAAATTTATGAGGGAGTGCAGAC
GTTTATGACATCTTTTGATAAAACAAAGATAACAATTACAGTGTCGTAAA
AACTGCTCTCATCCATAAATTTTGCAGGGTATCCCGCTACGCCTATGCAC
GATATCTATATCACGATATGAAATCTCAGGACAATGTTAATGAGAAAGTC
AAATCTTAACACTTTTGATTATCTTTCCAGGTAAAGCAAGACGTGGCGAC
GTTTGCGTGTTCTTCTCGCATAGCGGTAATACACGTGAATGCATATTCGC
GGCTTCCCACTTACGTTTACGTGGAGTACATATTTTATCTGTCATTGGGC
ATGATGATTGCAAGTTAGCTGAGAGTAGTGATGCATTCATTTCTTATGAA
TTGGAAAACGATCTTGAAGAACCAATAGGAGGCGTTCCAACCACGAGTGT
AGTTCTTCAGGTTTGTATTAAAATGATTTTTTATAAGAATACAACCCTGT
GTCACAAACCCGCTGGGACTCAAGCCTCACTGGAAAATTTGGCAAAAATT
TCATCCCCGGTGGTAAAATACCCTGGAATTTCAGCCCTACTGGGAATTTG
ACTTTGATTTCATCCCCTTGAGCTCCATAATGTTTAAAAATATAATTTCA
CTCCAAAACCATCTCCACTGGGTTTTCTAACCTCGGAACAATAAAATTTC
TATCCCCATCGAGATTTCAATAGGAGTTTTTATCCCCGCTTAGGAAAAAG
TTCCACCGGGGCTTTGAGACAGGGGTGTAAGAATGCACTCTATTGGCAAA
CGACAGGGACAAGTGGAGTGATATAATAATGATTTAATCACTTTCAAGTG
GATGAATCATAATGTAGAACACCCTATAAGAGACACACGCGATAAACTTT
CTTACAGTTTGTCTCCACAGCTTAATTTCAAAGAAAGCTAGGCTGTGGTG
TTCACAGTAATTATCCCTCCGTAAAAATATCATTATTATTAAAATATAAA
GCTTTGTGATTTCAGTATACTGTCCACTGTTTTTAAAAAGTTGTTCGAAA
TTTTCAAAGCAACATATCTGCACAGCCCCCTGGAAAATTTGGCCTAAATT
TGGCCCCCTATTGTAAAATTACCCTACAGTTTTAGCCCCACCGGGAAATT
GACTTCGATTTCATCCAAATTTGAAATTCAAGGGTAGATTTGTACTCCAA
AATCATCCCACTGGATTTTTTGACTTAGGAACAATGGAAACTGTCCACTG
AGATTTAGATAGAAATTTTATCCCCACTGGGTGAAAAATTCTCACCGGAG
CTGTGAGACATGGCTGTGTAGTTTATATTCGCAAGTGTAGCGTAGTGGTT
ATCGTGCTTGACTTCTGTCCAGTAGGCCCAAGTTCGATACTCACCGTGGC
ACTACGATTCATTTGGCAAGTGAATGTTCCTTCGCTCGGGTCAACCCATG
CCATATTAGGCTAATAGGGTACCATAACTCTAATACAAGAGTATGGGTAG
ATATTCCAGATAGTGTGGTGTGCTGAGACACTTAGGNCACTGGGTGAAAA
ATTCTCACCGGACCTGTCAGACATGGCTGTGTAGTTTATATTCGCAAGTG
TAGCGTAGTGGTTATCGTGCTTGACTTCTGTCCAGGAGGCCCAAGTTCGA
TACTCACCGTGGCACTACGATTCATTTGGCAAGTGAATGCTCCTTCGCTC
GGGTCAACCCATGCCATATTAGGCTAATAGGGTACCATAACTGTAATACA
AGAGTATGGGTAGATATTCCAGACAGTGTGGTGTGCTGAGACACTTAGGC
GTTTCTACACCTGCGAGGACATCCGTTCTCTCATGTAGATCGAGTGTCAT
GGTATCTTATAGGGGAAAAAATATCGGAATTTTATTTAGTCGGTTTTTTT
TTTCGTCGGGGAAAAATTTCATCACCTAGAGGCATTTTCGTCACTTTCCC
TCGACCAAAATTTCAAATTCGTCACTTTTCCCCGACGAAATTGTTCACTT
TCATTTTCACTTTCACCCAATTAAATTGTCCTAATGAAATGGTTTCCTTC
ACTAGTTTGAAAAAAGATCTTGTAATTCGACGTTTAAAGCACTAATTTCG
ATTAATAAACGTCCAAAAAATTTGGATTTTGATTTTGGTTGGGGTTTGAA
AAATCGGGTAAAAGTTTTGGTCGGGGATAAAAAAATCGGGTAAAACTTTT
GGTCGGGTGATAAAATATCGGGGAAAAAATTCGTTGGGGGAAATTTTGTC
ACCCCCTTAAAATGTTCGTCACTTTTCCCCGACATTTTTTCCCCGATAAG
GTATACGCCATGGCTCGGAAGCTCGTATCTGTAGGGTAGGAATGTCTGAT
TGCACTGTGATTCCTACTGCAACCAGAGGTAGGACCTCGTTGGTAGGACC
CATTCCAATGCATCGGAAGGAATATCTATCTATCTAATGTAGTTTTTCGA
ACTTTCTTTTTCCACAACTTTTCCATCTTTCAGGAGATGATAATTAATGC
AGTTGTTTGTGAATTAATAACACGAAAACGATTCAGTAAGATCGAGTTTG
CAAGAAACCATCCAGGTGGGTCACTTGGTGTCAAACTTTGTCAGCCCTCT
ATTGATATGAATGATGAGAACCAATGAAATCTATTTATTTCTATTCTCAG
CTGGCACACAACGTTGTTCTAACGTTATAACCCGAGGGGGGTATTTAGGC
AAATGGAGGGTACGATATGCACCGCCCTTAAGGGTACCTTTTTTGGATTT
CCAAAGTCTCGCTAAGGGTCGAGAAAATCAGAAAATCAAATTTCAGTCCC
ACTAAGGGTAGGAGAAATAGGAAAATTCCAACTTTTTACCCCAAGAAAGA
TCGAAATTTGGTCAAAATTGGTCAAATTTGTAAGGGTTGTAAAATTCACA
AAATTTTCCTTTGTTTTCTCCTTTTTAGTCCCGGTAATGGTCTGAGGGTC
GAAAGTCGGGCGGCACCCCCTGTAAGCTCGCAACCCTAGTACCCCGGGCG
TTATAAGGACGTTGTGATCATTAGATAAACGTTAAACAGACGTATTGTGC
CAGCTGGGATACATAGTATAGTTGACGCTTTTTTAATTCAATTTTCAAGG
AGAGATAGATTTCCATCGAATAAGAGAGCGTATCGAATCGTTTGCCAGAG
TTTCTTGTTGACGGTGACTTTCAATATCATTGAATATTAATGGAGCATAT
TTAATAGTGAAATGTCGAATTAGAGAGCCTCGGCTGTATGTTATCTCCAA
CGATTTTAGGAATATACACAATTTGTCTTTGGCATATTTACAATCTTTAG
GGAGTGCATTGGGGGTTTTCGTAACCCTTAAAGAGACTTTTGAGGATGTA
AAAATGGAATTCTTATACCCTCGCAAATACCCGGCACCCATTTTTTCCTA
AAAGCCCTCTCCCCTAGCTTACGTATTCTTACTCAATTTTATTGGTTATT
GGAGGGGTACAAATCTTTGAATTCAATCATGTTCATTATTCAATCTATGA
AGCACTAAAATAGACAACAAATTATTTTCTTTCTTAGCTAGAAAAGCACA
ATTTTCATAGACAATTTGATAGGATATTTTGTATTTTGTGCAGGAAATTT
CCAAAATTTATAACTTTTATTATGGTGGTGTATTTATTTATTAATATAAT
ATGTGCAAAATATTATCTCTTTAAGGCTGATAAATTCAATTTTGAAATAC
AAATTTCATTTAATATATACAATTTAACAATTTTTACAAAGTTAGAAACG
TACTGAAATGAAAATAAGAGTAAAATCAAGTGCAAACTGCTCAAAATGAA
GACAAGACAAGAAACAAATTTTACAAATTTCACGGACATCTCAAAAATAC
CTTTAAAGGTCAATTGTTTTTGGACAAATACTGTATAACACGGCTTCTAA
AACTTTCTAAAACTAAATCTAAAAGTTTTACTTTTGTAGATCGAAAAACA
AAATTTATGGTGCGAGACATTTCGGTGAGTGGCACGTCTTTATTATGGAA
ATTTTCTTAAATACATGCCCAGAAAGAATGTTAGTCTTACAAGGGTGTTA
CAATTTCATTAGAAATTTACTATACTTTAGTCACAAATTTTCGAGATATT
ACAAATACAAACAGTATAGGCCATTTTACAGTAAACGCAATTCGTAATGG
GTGAACAAGATTTTGCGAGAAAAAAAACGACTTCTTATTGGTCCAAGATT
TCTGAGATTTTTGAGACCTACAGGAATTGGTTATAAAAACGCAATTAAGT
CCTGATTAACCATGATTCATTGCAACTGCAAAATTGCCTATCATAGGCCA
TTTCACATTCGTAAAGCGTAATGGGTAATTAGGACCACTGCACGCCAATG
ACGACTTTTTATTGGTCCAAAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071796-exon-scaffold_63-1575043694:1206245..1206915 | TCONS_00071796-exon-scaffold_63-1575043694:1206245..1206915 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1575043694:1205708..1205809 | TCONS_00071796-exon-scaffold_63-1575043694:1205708..1205809 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1575043694:1204356..1204585 | TCONS_00071796-exon-scaffold_63-1575043694:1204356..1204585 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1575043694:1200441..1202332 | TCONS_00071796-exon-scaffold_63-1575043694:1200441..1202332 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1510915933:1206245..1206915 | TCONS_00071796-exon-scaffold_63-1510915933:1206245..1206915 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1510915933:1205708..1205809 | TCONS_00071796-exon-scaffold_63-1510915933:1205708..1205809 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1510915933:1204356..1204585 | TCONS_00071796-exon-scaffold_63-1510915933:1204356..1204585 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1510915933:1200441..1202332 | TCONS_00071796-exon-scaffold_63-1510915933:1200441..1202332 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1491911889:1206245..1206915 | TCONS_00071796-exon-scaffold_63-1491911889:1206245..1206915 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1491911889:1205708..1205809 | TCONS_00071796-exon-scaffold_63-1491911889:1205708..1205809 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1491911889:1204356..1204585 | TCONS_00071796-exon-scaffold_63-1491911889:1204356..1204585 | Clytia hemisphaerica | exon |
| TCONS_00071796-exon-scaffold_63-1491911889:1200441..1202332 | TCONS_00071796-exon-scaffold_63-1491911889:1200441..1202332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1200441..1206915 - |
Blast
The following BLAST results are available for this feature:
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