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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071787 ID=TCONS_00071787|Name=TCONS_00071787|organism=Clytia hemisphaerica|type=transcript|length=8761bp protein sequence of TCONS_00071787-protein >TCONS_00071787-protein ID=TCONS_00071787-protein|Name=TCONS_00071787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2251bp MTSIMDESLFGGRTKSIEDIAKKFGVTMRQKKPPFSITRSSRYSKTQSMSRun BLAST on NCBI transcript from alignment at scaffold_63:1049425..1098789- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071787 ID=TCONS_00071787|Name=TCONS_00071787|organism=Clytia hemisphaerica|type=transcript|length=49365bp|location=Sequence derived from alignment at scaffold_63:1049425..1098789- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:1049425..1098789- >TCONS_00071787 ID=TCONS_00071787|Name=TCONS_00071787|organism=Clytia hemisphaerica|type=CDS|length=135120bp|location=Sequence derived from alignment at scaffold_63:1049425..1098789- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071787 vs. Swiss-Prot (Human)
Match: SVIL (Supervillin OS=Homo sapiens GN=SVIL PE=1 SV=2) HSP 1 Score: 488.034 bits (1255), Expect = 2.598e-139 Identity = 313/938 (33.37%), Postives = 494/938 (52.67%), Query Frame = 1
Query: 4327 ANDKRKLRPNRKQRSGANPMKSLQNRDDLINEVAVADKQKEQRMNKIDLQSKFLR------KNDLADEAISALRATVDFSKTKLRKVEVNKKTMADDVLDESFKPTEFENVLIQVKGRRKCQTTLVDFNTASLNSNDCYIVCTPTNILCWNGSQANVIERSKAAEVASRINQKKEMGCKALDVVYLDQG---SANENKVLRLLGGGSVNSKAAVVPDED--FEKAMISAYMTYVVCETSDPPVLIPLDSQCHRMPTKEILQTDSAFIFDFITEVYVWLGRQTKSEQRRIVQKLAAEKFAEGYYKLNMEQKNPALSRVTHTNTGAHASRKISVTAETLPNSGRRGSKPQGGRRASVSQGRHQKKELVQRPSHSLLLQLFEGSEWVIFKEKFCDWPDESRIIRMKGGASAVGEVTKEVSTEIQIQPVDVATMIPEQPLTKMVLDNMDIGRGRGIPKGMD--GYHVITLDVKTWHVHENQSILLPDESFGQFHSGEGYVIRWQYRI-VKVRALRNCDDVMKAGGMERCCYFFWLGNDCSVNEEGATAVMTIELDREKGPQIRVVLGKEPPALLQLFDGSMIIHAGKR--PVNGVRREYSDKSLIRLYCVRNEEEAEACLLQVPASYESLRSRTSFVLLLCEQGEVLLWHGCKSNEGTRKAAEHAVQNLIQNHPEEASIADKSXXXXXXXXXXXXXXXFWMALG--GREAYGSLLEDTKDYSNLSPRLFHMESQTGQFVAHEITSPSKSALHNCPFPILQDDLYNVEQPAIFMVDAIETVYLWFGWWPDDEEGTEASNSXXXXXXXXXXKAMESAVSY--AKEVGRSLDFMYAVYAGLEPEGFIELFPYWVVQEDITXXXXXXXXXXXXXXXXXXXXXMFSKEFYTIEELREKPPPKGVDPTKLEKYLSEEDFLAVFNFSKDTFMKLPGWQQVNWKKKLDLY 7080
A KR +RP R+ ++ NP+K L R+DL+ E EQR+N ++SK ++ ++ ++ ++ L + +FS LR V + ++ + + +K +L+Q+KGRR QT LV+ ++LNS DC+++ +P W G ANVIE++KA+E+A+ I K+E+GC+A + +++G + K L GG + ++A P ED +E A+I Y + + L+P D ++P +LQ +FDF +EVYVW G++ QR+I +LA + G + NP E P R+G QGR P ++ +L E +E ++FKEKF DW + R G + + ++ T+++ V +P Q +LD +++GRG G+ +G D + + ++ V WH+ E LP +S GQFH G+ YV++W++ + V + + + ++A G E+C YFFW G +V+E+G +A+MT+ELD E+G Q++V+ GKEPP LQ F G M++H+G+R V+ E+ RLYCVR E E LL+V SLRSRTS V+L + + LWHGCK+ T++ A + + P EA + S++ + E +EG EP FW ALG R+AY +L+D + N +PRLF + S +G F A E P+++ P LQ+DLY+ QPA+F+VD VYLW GWWP + + T S R RW +R+ AME+ + Y K + + Y ++AGLEP F +FP W +EDI E+ + +I + + L K Y + +L +P P+GVDP KLE YL++EDF + ++D + LP W+QVN KK L+
Sbjct: 1346 AEHKRAVRPKRRVQASKNPLKMLAAREDLLQEYT------EQRLNVAFMESKRMKVEKMSSNSNFSEVTLAGLASKENFSNVSLRSVNLTEQNSNNSAV--PYK----RLMLLQIKGRRHVQTRLVEPRASALNSGDCFLLLSPHCCFLWVGEFANVIEKAKASELATLIQTKRELGCRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYEAAIIETNCIYRLMDDK----LVPDDDYWGKIPKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLA-KHLWNGTFDYENCDINPL------------------DPGECNPLIPRKG------------QGR---------PDWAIFGRLTEHNETILFKEKFLDWTELKRSNEKNPGE--LAQHKEDPRTDVKAYDVTRMVSMP-QTTAGTILDGVNVGRGYGLVEGHDRRQFEITSVSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKFMVSTAVGSRQKGEHSVRAAGKEKCVYFFWQGRHSTVSEKGTSALMTVELDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEEEENVQSEW------RLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHSSSKVTIHECDEGSEPLGFWDALGRRDRKAYDCMLQDPGSF-NFAPRLFILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWPIENKIT---GSARIRWASDRKSAMETVLQYCKGKNLKKPAPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 2214 The following BLAST results are available for this feature:
BLAST of TCONS_00071787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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