TCONS_00071773 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071773
Unique Name	TCONS_00071773
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2002

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_63:1002457..1008442-

transcript sequence

>TCONS_00071773 ID=TCONS_00071773|Name=TCONS_00071773|organism=Clytia hemisphaerica|type=transcript|length=2002bp
AATAAGAGTATCTAATTGAAGatataatatgaaaaaagttgcTTGAAAGT
GATGAAGGTTTGAAGTATAAATGGAGAAGATTTTGCACTCGAAAATGAAG
CGACTCAAAATTTTGAACATGTTTTTCTTCGCACTTATTATCTTCGGATT
TGCAATTTCATTTACTAATGGAAATGATGGCAACCGTACTCGACCAATGA
ATGAAACTAATACCAATTCTTCAGCCACAAGAGCTACCGCGACTGATATT
TACGACAAATTATTCGGCAATGACGCAAACTACCAGGCAGAAATTCGTCC
ACATGCAACAAATGGAAAACGACAACTTTCAATCAGTTTTGACATTAACA
TTCAAACGATCGGTAGCCTGAAGTGGTTTGATTATCGGCTAACATGGAAT
GCAACGGAGTTCAACGGAATTGATACTATCAATGTCGGTAATACAATAGC
ATGGACACCTGATATTATGCTTTATAATGATGGATCAGAAGAAGTTGTAT
CACATACAGACTTACATCGATCCAAAGTACTGATCAAAGATGATGGACAA
TTGATCTGGACGAACTTGGTGACCAACAAAGCCACCTGTCAAGTGGATGT
CACCTGGTTTCCAATGGATGAACAGGTATGCAACCTCACATTTGGTTCAT
GGTCGTACAGTAAAAATGTAATGGAcatcaaattcaaaaacaagaaaaaa
gatAGCGATATGATCAAATCAGGTTACCACATCCCAAACGGTGAATGGGA
TATTGAAAAGGTGGAattttttgaagaagaaaaaagttttgattgtTGTC
AACAACCTTTTTCTGTGGTCACTCTTCAGGTTTCAATGGTCCGCTATCCA
GATTTTTACTATCTATATGTATTTCTACCCTTCATATCTCAACTTATTTT
ATTCCTGTTGATTTTTCACATCCATCCTGACCAAGGAGAtcgtttgagtt
atggagttgCCCTGCTGTTAAATATGACTATGTACATGATCTTCCTATCT
GATAAATTGCCGGAAAAGTCGGATAAAATCCCGTTTGTCGGAACCGTTTT
CGttgctttttttttcttattatcgATTGGGTTGGTTCTATCAGCAATCA
CAATGAAATATTCCAAACATGAAACGAACTTACCAAAGTCAGCTCACAAA
ATCAAACGGCTCTTGAATAAAATATCGCCAACAAGAACAGCTACCCTAGA
TTTGAGCAATGAAGGAGCGTGCTTTCCTGAATCATTTAATCTAGAAGAAA
AGAACTCCTCTAAAATCACCAAGAATAGTTCACTTATACAGGATAAAGAC
TTTATAAATAACATTGACCGAAATGGTAATTCACAAAATGGCTTAGATCA
TCAGACTATAGAATCCTCAACCAATCATGATATGGATGCTTCAAATTCAT
TCCAAGGATGGTATGAATACATGAGATTTGTGGAGAAGTGTTTGACTTTC
GTTTTCGCTGTGTTGATGGTGCTTGTACCCATCATTGTTGCTTACtgctt
gaaataaaaacttAACATCTTTGAGTAAAAAGGGATAATCTTGAGGTGTA
GAAACTATTATCACAAACTAAATCAAGTTTATTAATATTTCCGGGAAAAC
ATTTGACGGAGTTTGCAGTTTTAGGCTAAATCCGCCAGATTAAGTAATTG
CCAAAGTAAGCCTCTTGATCAACCGACAGATTAGTAAACACCAAAGTTTA
ATACACTTAAGGTATATTACTTAAGAGGGGTACTAGTCTTGGAGAATGCC
GGGTATGTGCAAACCAGGCCACCGAAAGCCGACCCCTAAAGAGATTAAAT
ATTTGCAAAGAAGATGTAACCTTAGAgtgccaaaaatcgaaaaatttcct
AACCTTTATCAGGGgatattaaaaaatttctttgaacgACCTCTGCCTTG
ttaagattttttgactttttaaaattttcgtatccttaaagaaagttaaa
ttatttattgtaggtaaaaaactgaaattttccGTACGCTAAAATCCAGC
AC

Run BLAST on NCBI

transcript from alignment at scaffold_63:1002457..1008442-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071773 ID=TCONS_00071773|Name=TCONS_00071773|organism=Clytia hemisphaerica|type=transcript|length=5986bp|location=Sequence derived from alignment at scaffold_63:1002457..1008442- (Clytia hemisphaerica)
AATAAGAGTATCTAATTGAAGATATAATATGAAAAAAGTTGCTTGAAAGT
GATGAAGGTTTGAAGTATAAATGGAGAAGATTTTGCACTCGAAAATGAAG
CGACTCAAAATTTTGAACATGTTTTTCTTCGCACTTATTATCTTCGGATT
TGCAATTTCATTTACTAATGGAAATGATGGCAACCGTACTCGACCAATGA
ATGAAACTAATACCAATTCTTCAGCCACAAGTATGTATTTTTCTGAATGT
GAAGAGTGTGCTGAAACATTTTCATTGTGAAGAGTGTGGTAAAACATTTT
AACATGAGGAGTATTCTAAAACACTTTTAATGTGAGAAGTGTGGTAAAGT
ATTTTCAATACGAGGAGTGTGGTAAAACATTTTCAATGTGAGGAATGTGG
TGTAACATTTTCAATGTGAGGAGTGTTTTTGAAACATTTTCATTGGGAAG
AGTGTGGTAAAACATTTTAACATGAGGAGTGTGGTAAAACACTTTTAATG
TGAGAAGTGTGGTGAAACATTTTCAATGTGAGGAATGTGGTGAAACATTT
TCAATGTGAGGAATGTGGTGAAACATTTTCAATGTGAGGAATGTGGTGAA
ACATTTTCAATGTGAGGAGTGTGGTAAAATGTTTTCAATGTAAAGGGTGT
GGTGAAACATTTTCAATGTGAGGAGTGTGGTAAAATGTTTTCAACATGAG
GAAGTGGTAAAATATTTTCAATGTAAAGGGTGTGGTAAAACATTTTCAAT
TTGAGGAATGTGGTGAAACATTTTCAATGTGAGGAATGTGGTGAAACATT
TTCAATGTGAGGAGTGTGGTGAAACATTTTCAATGTGAGGAGTGTGGTAA
AATGTTTTCAACATGAGGAAGTGGTAAAATATTTTCAATGTAAAGGGTGT
GGTAAAACATTTTCAATTTGAGGAATGTGGTGAAACATTTTCTATGTGAG
GAGTGTGGTGAAACATTTTCAATGTGAGGAGTGTGGTGAAACATTTTCAA
TGTCAGGAGTGTGTTACAATATTTTTCAAACTGAAGAGTTTTTCTTTCAA
TGTGAAGAATGTGGTAAATCATTTTTAAAATGAACAGTACGTAGTAATGT
CTGGAATATTTCCAACGAACTTATCTTTTTGACATTTCAGGAGCTACCGC
GACTGATATTTACGACAAATTATTCGGCAATGACGCAAACTACCAGGCAG
AAATTCGTCCACATGCAACAAATGGAAAACGACAACTTTCAATCAGTTTT
GACATTAACATTCAAACGATCGGTAGCCTGGTACGTCATGCGATTTTAGA
CAGAATACTGTTTTGTGCGATAAAATTTCATTTCAGATTATAGCACAGAG
TTGTTAGTTAATCTCAATAATATCAAATCTTTTAGATAAATTTTTTCGAG
AATATCTTTCCATCGGTGTGCAGCATAAATGATTGCTAAAAAATTGTTTA
AAAAATGTGTAGAAAAACTTTTGAGACAGGAATTAAATATTTATAACTCA
CGTTTTTAGGATGTGAAAACGCAGCTCTTTCACGTTACGTCGGTCATTTT
TATGGTAAGTTGAAATTACTTGGCTTGATAAAAGATGGAAACTGATGGAC
CTTGGTCGGGAACAAACGATAATCATCCCCCCACAGCTCGTGATCAGCCA
GTGCAGTACCCATTATTTCAATCTCAAGTCTGTTTCCCGTTTCAGTTAAA
AAGTTAGAATGGATATAGTTTAAGGTGTGATTCTTTGGAATGCCTTTTTC
CCAAAAAAAATCAAAATCCAAATTTAATTGCAACTCTTTCGTCTTTTGTA
AAAATTTCAGAAGTGGTTTGATTATCGGCTAACATGGAATGCAACGGAGT
TCAACGGAATTGATACTATCAATGTCGGTAATACAATAGCATGGACACCT
GATATTATGCTTTATAATGAGTAAGTAGCTGNAGGATCGAAGCACCTTGG
TGCAGTAATTGGCAGCCAAGAGTTTAAAGATTCGTTCATCGCGGAAAAAG
TTCTGACCTGGGTAAACGAGATCACGCTTTTGTTCAAAATTGCTNTTATG
CTTTATAATGAGTAAGTAGCTGCTATTATTCTTTGTTAAAACTCGACTCA
CACTTTCACCCTCTATGGAATCATAATTTTGTAACTCGATTGATAGAATT
CTAACTGGATATGACAGTACTTGTTGAAAACGTACAAAGGAGTGGAATAT
TATACACAAGTAAAAATAACACAATTAGAAAACGACGATGAAAATGAAGA
AGAAGAAAATCAACATCTTGTAGAATTGTGTTACCGTTTTAAAAGAAAAA
AACATTTCATATTAGAGCGTCATCACCATGAAAGAGTTTTGCAAAAACAT
TTATACAGTCAGGTATCTCATACATAACAGAGTGCAGCCCAATGGATCAT
AGAAACAGGTGTATTATGAGACCCACAAGTGTTTTTCGCGATGTCATAAT
AGGGACTAACGTGATTACGTGATTTGGAATTTTTTTTATTCATGATTGCG
TGATCAGAGGTCAAAACGTGACCGTGATTGGAAAGATTTTTGAGCCGTGA
TGCGTCATTTGGACTTTTTTCAAAGGGCGGTGCGTGATTATCTAAATCTA
TTTCTAACTTGCGTGATCGTGATTGAAGAAAGGAGAGCCTCTTTTATGAT
GAGATTATATGTGTTCATTATTAATTACCTCATTAACTATTCATTTACAG
TGGATCAGAAGAAGTTGTATCACATACAGACTTACATCGATCCAAAGTAC
TGATCAAAGATGATGGACAATTGATCTGGACGAACTTGGTGACCAACAAA
GCCACCTGTCAAGTGGATGTCACCTGGTTTCCAATGGATGAACAGGTAGA
GATCACAAATTACTGTGGTTTACTTATGATACTTTACAATTTTTTTTATT
AAGGGAGCTGAAAACCTTGTAGCCTATACTAGACGTCACAGTTTTTTTCA
TGCAGAAACGGAATCAAAAATCCCGGTTTTTGGTGAGGTGCTCACTAAAC
ACCTTGAAAATTAGGTCAAAATACAAATTTAGCCAGCAACGACAATTATA
CAATTTCTGTCCAATCCAAAAAGTGGATCACATGAATGGTCACATTTGAA
ATAATTATTAAACCAGTCAACATAAGCTCAGAGTGGCAAATATGTAAAAG
GTTCTAAAAGTGAAGTTTTCAGTACTCAAAAACAAAAACACGAAGGTTGA
AATGTGGGGAATATTTCTTATTGGTAGGGATTATGATCCTTTCTATTGAT
TGAATTGTGTGTGTAAGAATATCTAAAGTCTATTCACGATAAGTGTGCAC
TCTTTTTTCATTTACCTATAACTTTTGAAAGAATTCTTCAATCTTTATAA
ATTTGGTATCGTTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGAAGAAGAAAAAAATGAAGATCTTGTA
GAAAAGTGCTATAACTATCATTTTCACTGAAGTGAAACCTTGATTATCGA
ACGTTATCACTGTGAAAAAATTTCTCAAAAATAATCATTCAATCAAAAGA
TATCAAACAAAGTTATAAGCTAATTGACGTCTAAAAACGCTGTTTTCTGC
TGTTTTCTGCTGTTTTTTGGGGTCAATCACTTATCAACTTTGTATCATTA
CTTTGTATTGAATAAATATTTTAGTGAAATTTCTTCACAGTGATGACCTC
CAAAGATCAAAGAATCTCTCCAGTGAAAATGAAAGTTATAGCACTTTTCT
ACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAATATCTCTCCAACGATACCAAATTTATAAAG
ATTGAAGAATTCCTTCACAAGTTATAGGTAAAAGAAAAAAGAGTGCACAC
TTATCGTGAATAGACTTTAACTTATTATACTATAAGCTTTGGTCATCAGA
TCATCTTTTTTATCTTAAGCTTAAGCTTGTTTTAAGTTCTACATATTACA
TTAACACAATTTTACTTTTAGGTATGCAACCTCACATTTGGTTCATGGTC
GTACAGTAAAAATGTAATGGACATCAAATTCAAAAACAAGAAAAAAGATA
GCGATATGATCAAATCAGGTATGTTTCTTAAACTGCTGGCGATAGACTTT
CTAAAGAAGCGATTCAGCCTAAAAATAATTCTACATTGACTAAAAAAAAA
ACAGGTTTAAAGCATTGTTGTATTGTATGTGGTATCTATAAGTCATAGCG
GGGATGATAATTCAGCGTAGTTCTCATTTGGGAATGTAATAAATAAAAAA
TAGCCGTTTCTTACCGGAGAAGATTTTTCGGTGTATTTTTCAGCGATTTT
GGTTCACAGGGGTGTATTATTTTTGATGTTTTCTTTCAGGTTACCACATC
CCAAACGGTGAATGGGATATTGAAAAGGTGGAATTTTTTGAAGAAGAAAA
AAGTTTTGATTGTTGTCAACAACCTTTTTCTGTGGTCACTCTTCAGGTTT
CAATGGTCCGCTATCCAGATTTTTACTATCTATATGTATTTCTACCCTTC
ATATCTCAACTTATTTTATTCCTGTTGATTTTTCACATCCATCCTGACCA
AGGAGATCGTTTGAGTTATGGAGTTGCCCTGCTGTTAAATATGACTATGT
ACATGATCTTCCTATCTGATAAATTGCCGGAAAAGTCGGATAAAATCCCG
TTTGTCGGAACCGTTTTCGTTGCTTTTTTTTTCTTATTATCGATTGGGTT
GGTTCTATCAGCAATCACAATGAAATATTCCAAACATGAAACGAACTTAC
CAAAGTCAGCTCACAAAATCAAACGGCTCTTGAATAAAATATCGCCAACA
AGAACAGCTACCCTAGATTTGAGCAATGAAGGAGCGTGCTTTCCTGAATC
ATTTAATCTAGAAGAAAAGAACTCCTCTAAAATCACCAAGAATAGTTCAC
TTATACAGGATAAAGACTTTATAAATAACATTGACCGAAATGGTAATTCA
CAAAATGGCTTAGATCATCAGACTATAGAATCCTCAACCAATCATGATAT
GGATGCTTCAAATTCATTCCAAGGATGGTATGAATACATGAGATTTGTGG
AGAAGTGTTTGACTTTCGTTTTCGCTGTGTTGATGGTGCTTGTACCCATC
ATTGTTGCTTACTGCTTGAAATAAAAACTTAACATCTTTGAGTAAAAAGG
GATAATCTTGAGGTGTAGAAACTATTATCACAAACTAAATCAAGTTTATT
AATATTTCCGGGAAAACATTTGACGGAGTTTGCAGTTTTAGGCTAAATCC
GCCAGATTAAGTAATTGCCAAAGTAAGCCTCTTGATCAACCGACAGATTA
GTAAACACCAAAGTTTAATACACTTAAGGTATATTACTNAATATCCTGAA
AGGAGCCAAAATCAACAAAACTGTGCCTCAGCTGTAACACTTAAGGTATA
TTACTTAAGAGGGGTACTAGTCTTGGAGAATGCCGGGTATGTGCAAACCA
GGCCACCGAAAGCCGACCCCTAAAGAGATTAAATATTTGCAAAGAAGATG
TAACCTTAGAGTGCCAAAAATCGAAAAATTTCCTAACCTTTATCAGGGGA
TATTAAAAAATTTCTTTGAACGACCTCTGCCTTGTTAAGATTTTTTGACT
TTTTAAAATTTTCGTATCCTTAAAGAAAGTTAAATTATTTATTGTAGGTA
AAAAACTGAAATTTTCCGTACGCTAAAATCCAGCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044561	XLOC_044561	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:1002457..1008442 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33484	2.79855	1.32181	1.29319	0.186785	0.189772	1.62773	1.50499	2.99535	2.30353	1.94611	2.2209	2.11905	1.69205	0.123592	0.132633	1.10267	1.0442	4.15969	6.01781	2.04994	2.4869	1.4077	1.3984	3.06543	3.38003	0.302668	0.645928	0.24158	0.223756

Blast

[Close]

BLAST of TCONS_00071773 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 154.451 bits (389), Expect = 2.875e-40
Identity = 98/317 (30.91%), Postives = 169/317 (53.31%), Query Frame = 2

Query:  278 NYQAEIRPHATNGKRQLSISFDINIQTIG---------------SLKWFDYRLTWNATEFNGIDTINVGNTIAWTPDIMLYNDGSE--EVVSHTDLHRSKVLIKDDGQLIWTNLVTNKATCQVDVTWFPMDEQVCNLTFGSWSYSKNVMDIKFKNKKKDSDMIKSGYHIPNGEWDIXXXXXXXXXXSFDCCQQPFSVVTLQVSMVRYPDFYYLYVXXXXXXXXXXXXXXXXXHPDQGDRLSYGVALLLNMTMYMIFLSDKLPEKSDKIPFVGTVFVAFFFLLSIGLVLSAITMKYSKHETN---LPKSAHKIKRLLN 1168
            NY    RP A N  + L++ F +++  I                 + W D+ L WN +E+ G+ T+   +   W PDI+LYN   E  +   HT+     VL+   G   +      K++C +DV WFP D Q C L FGSWSY    +D++     +++D+  SGY IPNGEWD+  +     E+ ++CC++P+  VT  V+M R   +Y L + +P +    L LL+F +  D G+++S G+ +LL++T++M+ +++ +P  SD +P +   F +   ++ + +V++ I ++Y  H+ +   +PK    I  LLN
Sbjct:   36 NYNPLERPVA-NDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADERFDATFHTN-----VLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQM----QEADI--SGY-IPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVI--LLN 337

The following BLAST results are available for this feature:

BLAST of TCONS_00071773 vs. Swiss-Prot (Human)

BLAST of TCONS_00071773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHA7	2.875e-40	30.91	Neuronal acetylcholine receptor subunit alpha-7 OS...	[more]

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TCONS_00071773 (transcript) - C. hemisphaerica