TCONS_00071772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071772
Unique NameTCONS_00071772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071772 ID=TCONS_00071772|Name=TCONS_00071772|organism=Clytia hemisphaerica|type=transcript|length=1386bp
CCCAGGATAGCCGTAATACTAAAATCTCGCTGTTTGACTGTGATAAGAGA
AATTTGGATCGTCCAGACTTTTGTCGGCATTTTTAATGTATAATTGCTCA
CTTGGTGAGGGACATGTGTTTTCAATGCATAAACAACACAGGACGACTgc
atgaaaaaaagatttttgaaaacttgttcACGATATGTCTGGTCAAAGAT
GATGAGCgacgaagaaaaaattgatATTAGTGGAGAAGAAgatGAAGATG
GATCAGGACCACAAACCTTTGCAACATTAGCAGAGAAACGTGCACATCAC
AATGCCCTTGAAAGAAAACGAAGGGATCATATTAAAGAAAGCTTTAGTGG
TCTAAGAGATAGTATTCCATCTTTGGAGGGTGAAAAGTCCTCAAGAGCTC
AAATATTGCACAAAGCTACTGAACACATACAGTACATGCGAAGGAAAAAC
CATGCTCACCAGACAGATATTGATGAGTTGAAAAGGCATAATATGATTCT
TGACCAACAAGTACGAGAGCTGGAAAATTCAAGAGCAACTGGTACAGTCA
CAATTGATGCAACAGCTGCAGCTCTCCTGGGATCTGCTTCAGAGCTACTG
TTAAACACATCTGATGACAAGAGCATGAATTCATCATCTGAGACAGTTGT
AAAAACAGAACCTGTTCTTATAGAAAGACCAAACAATGCAGGTGACCATG
ACGATTACACCATAGCACCAAAGAAAGCAAAAGTCGAACCAGAATAGAAA
TATCATGATaatctaaaaaatataaaaattgcatgtaaagaattatttta
tagtattttttttgaaaaagttgggAACTCTTGAATTCCTCTTTTTTCTA
ACCTTACATTATATTATGTCTCATAGATAGGcattttcacacattttttc
TGTATACATTTTGCACATGAGTAATAATAATCAACCGTGAATAATATCCA
AATAAATTTATCTATATTAGAAATAATGTTGGCACTTTGTTTAAGGTCTA
TGAATGCAAATGAAATTGATATGCCAAAAAGTTACCAAATGTGTCTTTTA
TCATTTATGTTgttattttttagttttaatatAATGTAGGGTGAGTTTTG
AGCTTTTCTACAAGGTGATTACTAGCTTGAATTTGTAATTGTTTTATCTT
GACTAGATTTTATTATTATGATTGCTAATTGTAGAAAagcaatgtcaaaa
aaaaattagttatttattattgatgaatttttctttttattacactGAAC
ACTGTAGAAAAAACTTGTAAGCTATTTTTTAAGTGATAGATTTGGTTTAT
GTTTTAAATTTACCGCCTCATAAATTTCGcctttgttttgttctttttgc
ATGTACAGCTATTCATAAAATTTTGCTAAGAATTTT
Run BLAST on NCBI

protein sequence of TCONS_00071772-protein

>TCONS_00071772-protein ID=TCONS_00071772-protein|Name=TCONS_00071772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MKKRFLKTCSRYVWSKMMSDEEKIDISGEEDEDGSGPQTFATLAEKRAHH
NALERKRRDHIKESFSGLRDSIPSLEGEKSSRAQILHKATEHIQYMRRKN
HAHQTDIDELKRHNMILDQQVRELENSRATGTVTIDATAAALLGSASELL
LNTSDDKSMNSSSETVVKTEPVLIERPNNAGDHDDYTIAPKKAKVEPE
Run BLAST on NCBI

transcript from alignment at scaffold_63:981097..993775-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071772 ID=TCONS_00071772|Name=TCONS_00071772|organism=Clytia hemisphaerica|type=transcript|length=12679bp|location=Sequence derived from alignment at scaffold_63:981097..993775- (Clytia hemisphaerica)
CCCAGGATAGCCGTAATACTAAAATCTCGCTGTTTGACTGTGATAAGAGA
AATTTGGATCGTCCAGACTTTTGTCGGCATTTTTAATGTATAATTGCTCA
CTTGGTGAGGGACATGTGTTTTCAATGCATAAACAACACAGGACGACTGC
ATGAAAAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAAAGAT
GATGAGCGACGAAGAAAAAATTGATATTAGTGGAGAAGAAGTAAGTTTTT
GAAGAACCCATGCAAAAAATACTGTTTTTCTTTAATAATTTGTTTTCTTG
CTCTGAGCTGTTTTTAAGATACACTATATATAACTTTACTTTGTCTGGGC
TTTGTCTACACTCACTCTATCTTTTAGCGTTTAGCTGAACTGAAGAAATC
CATATTTAGGATATCTTTATTCCTTGGCCTCTTATATTTTGGCAGTGTTC
GTTAAAAGGCAATTGAAATTAAAATTTCCAGACAATATCATTCTAACACA
ATCAATCAGTTGAAGGGTATTTCCACTAGGGCACTGCTCCACTAGGGAGG
TGAAAAACATCAATTGATGTTTTAAAAGCTGACCACCCACCCACACCCCA
AAACTTCAAACACCTGAAATCCCTGAAAAATGATTAAAAATTGCCTTCAT
GGCTGTTTGGTCAGTCATCTTGATTTTCGCTACGACTCGCATAGTTTATT
TGAAGAATAGCAGAAGATAATTTCTACAAAATTCCTGTTAATTATCCATA
GTATCACGTTCGTTTGCGTAGGGTAAAATGGCAAAATGCGAAAATCAATT
TTGGCAAAATTCTTTTGAAAAATGAATTTACAACCTACCTCTTTTTTTTT
TTGGCTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGGGCC
TTCTTGGGAAAGACTTCCCCTCCAGATATTTTTGTGTTTGATATTGACAG
CTTTTAGATTGCAAATTCTCCCCAATCTCTGATTTATATGGCAGAAAATG
CCTCCTTTACTTTCGTCTTAATCAAAATTCCGGACGTTGCCTTCAATGAC
GTTCCAGGTATGAATANNATATCCATGCACTTATATTTTTCACTTTTTTG
ATTTGTTCTTGGATATGTTTCTCATAAGTCAACTGAGTGTCTAGGGTGAC
TCCAAGGTCTTTAACTTTGTCTATATTTTCGATCAACGTTGCTGTGTCAG
TAAAATAGCGAGAACTTTGCTTCAGCGCGTTGTTTTTCCCGTAGGCAAGG
TGCTCAAATTTAAGACCATTCAGCTGCATGTTGTTGTCTTCTGTCCACTT
ATAGAAAGTGTCTAGATCATTTTGTAGATGATAAACATCGTCCAGTTTGG
ATATTTCTTTCATCAAACGAGTGTCGTCAGCAAACGATGCCAAAATAGAA
TGAAGGATGTTGTTATCGATATCTTGAATCATGATCAGGAAGAATAGCGG
TCCCAGCACAGATCCTTGCGGCACACCTGAAATAACATCTGTTTCTGAGG
ACAAGGTTGAGTTTACTGAAACTCTCTGTGTTCGATGAGTCAAAAAGGAT
CTGATCCATTCAAGGAGTTTACCGTTTATGCCATTTTTCTGAAGCTTGTG
TAACAAAATGGTACGGTCTACTTTATCAAAAGCTTTACTGAAGTCTAAAT
AGATAACGTCAATGTTATTTCCATTCTCTAGGTAATGGATCAGTCTTTCG
GTGTGTTGAAGCATGACTAAGACATGAGCGGCCTTTCCTAAAGCCATGTT
GATTATTGTTATACAGATTGTTTTCTTCTAGATGACTCTGTATCTTGGCT
CGTACAATCTTTTCAAAGACCTTTGAAACGTGGGATGTGAGGGCAACAGG
TCTATAGTTTTCAGCAAGTCCCTGATTCCCTTTCTTGTAAACTGGGGATA
TATGTCCAGTTTTTAAAAGTTTTGGAGTGATTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATTAAGTATGTTTCTCCAGATGA
TTGAAAGTGGTAGAGCAATGTTATCTTTAGTTTTTAGCAGAAGAATAGCT
GGAAAACCATCAGGTCCAGTTGCTGAAGTTGGTGACAGTGTACCGATTTC
TTTGACAAATTCCTCGATAGTCAGATTGATATCTTCAAGTGTCAGTATTT
GTGACTCAAGCGGATGAAGGTCGTAGTTTTGAAAGGGTTGGGTGAAGACA
GACTTGTATTGGTTTTGTAGGATATTGGCCATCAAAAGGGGATCATTAGT
CAATTTGTTAGTGTCTGGATCGATTATTAAGGGTCCAACTTTTGGTTTAG
ATTTCGAGAAGCGATAAGCGTACGAGTAAAATAATTTTGGATTGGATTTG
ATTTTAGAGGTTGCTTGAGCTTCTTTCTATTTCCAGGTTACAAGATTTGA
CTATATCTTTTTATTCCATGAAGAGATTACTGTCAAATAAAAAATATATT
GACAATTAATGGGTACCATAACTTGGTCTAATGTCGACATCCCTCCTCTA
ATTTCGACACCCTTTTTATCAGCTGAAATTGATAGAAAGGTTGAAATTGT
TTTTCTTTGCTTGATGGTCAGAGAGGAATTATTCTTTTTCAATAAGTGAT
TCAAGCTTTCATATTATTCCTGTCTCTAAAAAAGGGTGTCGGAATTAGAA
GAGGGATGTCGATATTAGACCAACTTACGGTAAGCTTTCTAGAAATCCAA
ACATAAATTGCATAGCTTTTACCAAAAAATAGCACTTTAGGATCAGAAAC
AGTCAAAAACCAGCTTTTCCAATTTTCTTTGGTTGTTACAGGAATTAATT
CCTTGTTTGTTTTGATCTGAAATTTTCTGTAGGTGGTGGCCAACATGGTT
CCCTTGCTCATATCAGGGGGGCCTGAGACCGGGGTAAGAGAATTAAAGTT
TCTAAGTAAAATCTTAATTATCACCCAAAAAGTGCCTTTTTTTGTCCATA
TCTTTTAAATAGATAGTCCCAGCCTTATCCCTCCTTCAGTAAAGTTTCCT
ATACCTTTTGTCCTTCAGAAAAGCTAAAAATATTGGCCTTAATTGCTTGC
TTTCAATTCCTGTAGCCAGTAGTGTGACCCCCTGTATTTCTATTTTATTC
GGTGCGGTTTTTTAATAGAGATGTCACATGACTCCATTCCCACAGTCTTA
TTGGACTAGAGAAAGCAACAAAAGTGAAATCGTGTGATCTGAGCTGATGA
AAAAAGACCGTGGGAACTGGAACCGAATATAATTCTCATTCTAAAACAAT
GGCAGCAAGAAAAGCATGTCTTTTGCATTGGACAAAAGGTTGTAAATTCT
GGTTGCTTTAACCCTATTCGGCCTAGGGGGGGCTCTTTCTGTTCGGAGGT
CAAACTATTGGTAATAGCTCCTGAAATAATAGAGCTTTTGCCTTGAAATT
TTCTGTAAATTCCTAACTTTTTTTTAGCTTCAAAATAAAAAAAAATTTGA
CACCTAAAAATTTTCACACCTCGAGTATGATGACATTTCTGACAGTAAGG
TGTCACAAAAATTGACACTTTTCCAATACAAATTTATTTTTAATGTCAAA
TATATCGTTTGAACCTTATTTTATTGAATATTTAGGATAAAATAAGCATT
TTAAACTCAGACAACTTTTTTCTAAAGCTTTTGTTAGAATACAATAGCTA
TTTATAAGACATGAATTCCATATGTGACTAACGGACATTTCCACTGTTTA
GCAGGCTAGAAGTCAAGCTTGAAATTAGGAATAAAACTTCTTTTGGTGTG
GTAACTATCAGTGGGGGTCAAAGTTTCAAGAACCATATAAAACTTTTTCT
CTTGACTTTCACTTGGTCAGAAATTGCAATTAATAGGCCCGTGACTAACG
GACACAAAAATTAACATCTAAAATGGGACACTTTTACAAACAGCTGTAGA
GTGCTGTTCCTAAAGCTACAGTTTGGGTTTTTTGCTTAAATTCACTAGAG
GAAAGGTTGAATTTTATGTTTCAAAACNCAACATATTTATATTCAAGAGA
AAATGAAAACTTATGTTATTTCTGAATTTGAAATTTTGACCTAGATGTTA
ATTTTCTCATGGAATTCATGGAACAAAGGAAATTTTTGGTTTTTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAACGGTTTTTTAATGATTCTGACG
AGGCAATCCAACCATTCCTATATTTGGTGCTTTAGGGGTGAAATGTTATA
TCAATAGAATGACAAAAGCCTAAAAGAATAGAACAATTCTTATTTTTCTC
TGTGTGGTACCATTCCTGTCAAGTTCATAGATCCCGAAATTTTGAACANC
CCCCCCCCCCCCCAGTTCTGAACCGCCCCCAAAAGCCTAGGTTGAATAGG
GTTAAGGTTTTATCTTATCTCATCTCATTTACTTTAATTAGTAGAGGCTT
CTTCAATGTTTATGTTTATAGTCTATAAAAGTTTGTTTTTTTTCGGTGGA
AAAAAGTGTTTAAAAAAGCATTTTTTATGCTGNAAAGATCTGTTGAGTTT
TTATGGGTGTTTTTTGCACTGCATTGTTTCTTTGTTGAATCAGGACAAAG
ACAGACAAATTGGGTAAGGGTATTTATTTATTTACTTTGGAAAAGGATTA
TTCTCCCTATTATGACTGAAAAAGTGATCTTATGAAAATTTCATCTCAGG
TAGAATGAGTTTCGTGACTAACGGACACTTTTTGATGAGCCTCTTGTGAG
CTACCCACTCAACCTTTATGGCTAAAATTTTGTACTTATTTTATGGTCAT
GNTCTTCAATCTTAAATAGATGAACGAGTATTTGACTGATGGTTATGATT
TTTTCACAGAACATAGTAAAACTATTCAGGAACTTGGACCTTTTAAAAAA
TCTGTTACTTCTGGAGATATATTGAAAAGTTTAGACATGGGTACTTCCCG
TTCCCAAACCAAACACACATGCTAGCGGCAGAAACAAACAGCCATCTGCA
AAATTCAAGGGTCGTACGGGCAGGGGGNAGTACACATGGTACTAAAATTA
TTTTTGAGCTTTTTTGCATACCACCACGTCACTAAATGTCATGATGTCTG
AGATTTTAGTACCGACCCCCCCCTGGTACGGGCCGGGCCGTCCAACAAAG
AGAAGGCATAAACATGAGACTGTTTTTTTTTTCTTTTCAAAACACAAGAA
GCAATCAAAATGAAACATGGCAAGAAGTAACATTTGATACGGAATGAAAA
ATCTATGTTTCTGGATTTGAAAAAAAATGTCAACAACCTTTAACCCACCC
ACCCACTACAGTTGGTCACGCTAGTGTCCCGTTGAAACGTGTATTAAAGA
CTAATAAGGCAAAAGCGTTATATCGTTTACTTGACCCGTAAACAAAAAAA
ATACGCCGCAAAACTTCTAAAAAAATTCTGGCGCTTTTTTATGAAGTTAA
CATTTTCAAAAACTATGAACATTTAGCTACCGTCAACGTCAAGTGGGACG
ATTGGTCGAAACATGGGACTGTTGCATATCTGGTCTGTATTTTCACTTAC
TGTAAAATTGAAAGAGAAATTGCAGGGTGGCCAGCGATACTGGAAATACT
TGAAAATACTTGAATATGCTGGAAAAAATTATTGGTACTTGATTATACTG
GAGTTTTTGAAAAAATGCCCATTTTTCCAGTATATACTTGAAAATGATAA
ATTGGAATACTTGAAAATACTTGAATTTCTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTATTTCCAGGGCTCTTACA
GGCTGTTTTGAAGTATAAATTTTCCAAAATTTTCTATTCGGACCCAACCA
TGGTGGGTCCTCCTGATAACAATGTATTGTATCCTATTTGTAAGGTTAGA
CATTCTTGGTTGGTCTTATTCACTTAACCTATTTGATATGGATTTTTTAA
AAAAGATGAACCTTAATGGGCATACAAAAAATAAAAAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATTGAAAGAATATATCCAATGTGCACATTTCCACTCTTTCT
CTGCCAAATGGATATCTGATATTTGCAAATCAAGCTACTGCTGGAAAATG
GAGCCCATGGTAAATTAATTGTTCAGGCTAATGCTAAAGCAGTCAGGGAA
AACTTGGAAAACCTGGAAAAAGGGCTATTTTTAGAAAAAGTCAGGGAAAA
CATAGAAAAGCCAGGGAATTTTTGTAAAATTCTTCAAAAGTCAGGGAAAG
TCAGGAAATTTCTTTCTAGAGTCCCTTGAAATTGATGGTTTTAGCCAATC
TTTGAATCCCTATTTTTCAAAATTTTCTTTGTCTGACCCAACCATGGTGG
GTCCTCCAAGTAATCATGAAACCCATTAATATCAGGACACTTGACCTATC
TAAAATTGATGGTATGGTATTTTTGAAAAGTTTGAAAGGTAGTGACATGA
AAAGTGCTCGCCAATTTTCTATGTTCTATGTAAACTCTTGCTAGAAAATA
AACCTTCTGGGAGCAGTGAGCCATAGGGAAATGATTCTAGAAATAAGAAG
TTGAAAATTGGGAAAATGTCAATTTTTCAGCAAAGTTTTTGATTTGACTG
AATTGACTAAACCCTTAATTACACAGTTTCTTCGTCTGCTCGAACTGGAT
ATGTCTTAAAAGTCTTGAAGTCTGATATTTGAAGAAAATATTTCTGATAG
TCTCTAGAAAACATTCTGGGAATATCGGAACATTTCTTTCTACTACTTAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTGATTTGAC
AACCTTGCTGCGTAAGCTGTTAGTAATAAAATTCTAGAAATTAGACAACC
GCTGTAGTACGCCATGGTGTCATAAATCCACTAGTTTCTAGAGTACATTT
TGATCTGTTGTTTAATTTGAGAAAATGTCAAAATAATTCTGGCATCAGTG
ACATTATTTTGTGCACACAATTTTGTCATAATACTTTTAAGAAAGGGAAG
CCCATAAAATTTCTGGCACATTGAGGATCCGGATATCCCTATTCTAACGA
AGCACCATACGTAAAGTTCAAAATATACTTGAATGTACTTGAATTTTTCA
CCTTCATATACTTGAAAATAGCAAATATATACTTGAAAATTATCAAAAAT
GCTCCAAAAAGTACTTGAATATACTTGATTTTCAATGACTAAAATCGCTG
GCCACCCTGAATTGTAATTTCTAATATGCCATTAGTTAACTCAAATCAAA
TGACTTTGGAAGTTCAGTGAAATGGTGGCCGAATTGCCATCCCATGTTTT
GTCAGATAGTCCCAAGTTAAAGCAGTTGACGGTAATTATTTAAACTTAGT
AGTAAATAATGTTCAATAAACTATTTGTATCTTTCAAAAAATAAACACTT
TCAAAATGAGAAAGCTTATCATTGTCACCCCCCCCATATTTAGATCATTC
TATTTTGGGAGCAAAATAAGGCAGAAACTTAGTGCCCTGCGCAAGATTGC
CGCCTTATGAACGCAAGCTGATCCTGAAATATCTGAATTTCTCTAAGCTT
AAAAACAAGCAGTTTTTTTGTAATTTGCATTTGCAGGCAGAATTCTTTAA
GACCAAAAAACATACTTTTTTGGGGGTCTTCATAATCAAAGAAGACCTTT
ACTATGTGATAGAGCTAATTCAAACTGAGCAGAAATTCAACAACAATTCT
CATACTTATGTAGATAAGAAGTTGTACTTGTAGCCATTTTTGTGGTCAAG
AAAGAAGGAAAATGAGCACAAATTCTGCATAATTTATGTAAAATTAAAGG
AAAAATTAGAAATTTGAAGCTACATGAAAATATTATAAGAAAAACTAAAT
ATTTAACTCCTGGACAATGTAAATTGTTCAGTTGTATACACTGTAGAAAT
TGTATATCATTGCATCAAAATAAAAAAGCGTTATTAAGTCCATTTTTGTT
GTTTTGAGAAAATTGACTTTAAATTATTTTTTCCTTAAATGCTGAAAAAC
CATTAACATTTGAAATATTTTTGTGTTAGAAAAGCTATTAGTCCAAAATT
GTTTCCACTCTGGACTAAACTGGCTTTAACCCTTTCCAGACGCATGATTT
CACGGCTATATGACGCAAACAAAAATTTGATTTTTGACTGGCTTTACTAA
AATTGCAATATGGCCGACATCTTGTCACGTGACCGAAAAATCGGCAGATT
TTTTTCGGAACAGCAAAATTATTGACTTTGAATAAAGAAATAGAGTAAAA
GGCATTTGCTTTACGCCTTGAACTTTGAATATGATTTAGAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGAT
ATCGAAAAGCGTTTTTTTGCAGGTTACGGGAAATTTATCTCAAAATCATT
ATTCAAAACCATGTTATTGTATTTTGGCGCGAAAACGGTTAAAATCTTTC
ACAAAGCTATGGGCCACCTGGTGGCCCGTGCGTCATATAGAAACACGATT
CATGGGCCACCCAGTGGCCCGTGCGTCCGGAAAGGGTTAAAGGCTTTTTT
ACCCTGAAAATAAAGTGAAAAGTAAAATTCTTATTTTCTAAAAGCTTAAA
ATTAGGCCACCTTTGCTTGGTTTTTGTTGGATTTGAGCCAAAAAATCAAT
AAAAAATAGAGTGTAAAGCATCGGTATGGTCATAACTCAATCTTCCAAAA
AATGGACTTAAAGCTTTTTTATTTTGATGCGATGATATATTATTTTAACA
AATATCAATTTGTTTTATTTTGTTCAACAACTAAAGTGCCTTGCCATTTC
TTAAAAAGTAACATCCAATCAAATGAAAGTTAAGCGCTTACATTCAATCA
GTACAGATTTTTTAACAATCTAAATAATTATACATCATATTCCTTCCAGC
TTTTGTCTTTTGTCTAAAGATAAGAAAAGTTTTTTCTGTTTTATTCTAGC
AAAAACAAAACAACTAAACAAGGGCACAGTGACCCTAATAGAGGTCAAAA
ATAAAATCCATTTGTGTACCAAAATCTAGAGCTCCTTTACAAAATCCACA
ATCTGGCTATATTGTACATAACTCTTCATTAAAAGTTTTCAAAATTTTTT
TTAGGATGAAGATGGATCAGGACCACAAACCTTTGCAACATTAGTAATTA
AACATTTTTTCATATGTCTTCTATTATAATTCTTCAAGAAATTTCTTTTG
ATTTTGTTGCAGTAAGCTGTAACTGTATAATGGCAAGATGCTTTATTTGA
AGTTGCATCTGCTAATTACAAATCCTAGATTTACTAATCAAAACACTTTT
AAGCATAATAGTTTTTGGAAGTTCTGACACTTTTTTAACTCTTCTTTGAA
AATAGTCTGAGTATAGTATTTTAGCTTTTTTTTCAATTATTTTTGCTATT
TCAGGCAGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAAGGG
ATCATATTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCTTTG
GAGGGTGAAAAGGTTTGTTTACTGTGAAGTATTTTGTCTATTTTCGAAAA
TGTAGCTCATCTTTCCAACACTTATCATAATTAATAAGTTTTGTTTTCCT
TTATTGAAAGAAGTATAAATTCTTCCTTTTGTATCATTTTTAATTTTTTC
TCCATCTTTCTGTTATCTTAGTCCTCAAGAGCTCAAATATTGCACAAAGC
TACTGAACACATACAGTACATGCGAAGGAAAAACCATGCTCACCAGGTAC
AAAGTTGTAAAGAGTTTATTCATCTGATTTTAAATTATGTGACAGTTTTT
CGTGAAAATACCAGGNAGTTTATTCATCTGATTTTAAATTATGTGACAGT
TTTTAGTGAAAATACCAGAGAGGTCCTAAAAGGTCATTAAAAATAACTTT
TTCTCCTTTGTAAAATGCTGACTTGATTAGTAAAAAAGGGATTACCTTAC
ACGAATATTGCTAGTCATTTTATTAACACAAATAGACAAATTTTTTGTTA
ATAAAAACCCCAATCCTTGAAAAAGCAGAAAAGTTTGTGTTAGTTTTTAG
CATGTTTTAGTTTCAAGGCCATTAATTATTTGTCTTCTTTTATTTGTGTA
ATAAGGTAGCTGTTTATATAGAATCATTTTTGGAATTAAGTCATTTTTCA
TGCTTTTTTTCAGACAGATATTGATGAGTTGAAAAGGCATAATATGATTC
TTGACCAACAAGGTATATTGATTATTAGAGACAATTTTGATATTTTTTGT
GTTCAACCATTTTTTACAAGATCTGGACTTGATTTTTTCTGTTCTGTAAT
TTAGTACGAGAGCTGGAAAATTCAAGAGCAACTGGTACAGTCACAATTGA
TGCAACAGCTGCAGCTCTCCTGGGATCTGCTTCAGAGCTACTGTTAAACA
CATCTGATGACAAGAGCATGAATTCATCATCTGAGACAGTTGTAAAAACA
GAACCTGTTCTTATAGAAAGACCAAACAATGCAGGTGACCATGACGATTA
CACCATAGCACCAAAGAAAGCAAAAGTCGAACCAGAATAGAAATATCATG
ATAATCTAAAAAATATAAAAATTGCATGTAAAGAATTATTTTATAGTATT
TTTTTTGAAAAAGTTGGGAACTCTTGAATTCCTCTTTTTTCTAACCTTAC
ATTATATTATGTCTCATAGATAGGCATTTTCACACATTTTTTCTGTATAC
ATTTTGCACATGAGTAATAATAATCAACCGTGAATAATATCCAAATAAAT
TTATCTATATTAGAAATAATGTTGGCACTTTGTTTAAGGTCTATGAATGC
AAATGAAATTGATATGCCAAAAAGTTACCAAATGTGTCTTTTATCATTTA
TGTTGTTATTTTTTAGTTTTAATATAATGTAGGGTGAGTTTTGAGCTTTT
CTACAAGGTGATTACTAGCTTGAATTTGTAATTGTTTTATCTTGACTAGA
TTTTATTATTATGATTGCTAATTGTAGAAAAGCAATGTCAAAAAAAAATT
AGTTATTTATTATTGATGAATTTTTCTTTTTATTACACTGAACACTGTAG
AAAAAACTTGTAAGCTATTTTTTAAGTGATAGATTTGGTTTATGTTTTAA
ATTTACCGCCTCATAAATTTCGCCTTTGTTTTGTTCTTTTTGCATGTACA
GCTATTCATAAAATTTTGCTAAGAATTTT

Coding sequence (CDS) from alignment at scaffold_63:981097..993775-

>TCONS_00071772 ID=TCONS_00071772|Name=TCONS_00071772|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_63:981097..993775- (Clytia hemisphaerica)
TACGAGAGCTGGAAAATTCAAGAGCAACTGGTACAGTCACAATTGATGCA
ACAGCTGCAGCTCTCCTGGGATCTGCTTCAGAGCTACTGTTAAACACATC
TGATGACAAGAGCATGAATTCATCATCTGAGACAGTTGTAAAAACAGAAC
CTGTTCTTATAGAAAGACCAAACAATGCAGGTGACCATGACGATTACACC
ATAGCACCAAAGAAAGCAAAAGTCGAACCAGAATAGACAGATATTGATGA
GTTGAAAAGGCATAATATGATTCTTGACCAACAAGTCCTCAAGAGCTCAA
ATATTGCACAAAGCTACTGAACACATACAGTACATGCGAAGGAAAAACCA
TGCTCACCAGGCAGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAAC
GAAGGGATCATATTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCA
TCTTTGGAGGGTGAAAAGGATGAAGATGGATCAGGACCACAAACCTTTGC
AACATTAATGAAAAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGT
CAAAGATGATGAGCGACGAAGAAAAAATTGATATTAGTGGAGAAGAATAC
GAGAGCTGGAAAATTCAAGAGCAACTGGTACAGTCACAATTGATGCAACA
GCTGCAGCTCTCCTGGGATCTGCTTCAGAGCTACTGTTAAACACATCTGA
TGACAAGAGCATGAATTCATCATCTGAGACAGTTGTAAAAACAGAACCTG
TTCTTATAGAAAGACCAAACAATGCAGGTGACCATGACGATTACACCATA
GCACCAAAGAAAGCAAAAGTCGAACCAGAATAGACAGATATTGATGAGTT
GAAAAGGCATAATATGATTCTTGACCAACAAGTCCTCAAGAGCTCAAATA
TTGCACAAAGCTACTGAACACATACAGTACATGCGAAGGAAAAACCATGC
TCACCAGGCAGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAA
GGGATCATATTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCT
TTGGAGGGTGAAAAGGATGAAGATGGATCAGGACCACAAACCTTTGCAAC
ATTAATGAAAAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAA
AGATGATGAGCGACGAAGAAAAAATTGATATTAGTGGAGAAGAATACGAG
AGCTGGAAAATTCAAGAGCAACTGGTACAGTCACAATTGATGCAACAGCT
GCAGCTCTCCTGGGATCTGCTTCAGAGCTACTGTTAAACACATCTGATGA
CAAGAGCATGAATTCATCATCTGAGACAGTTGTAAAAACAGAACCTGTTC
TTATAGAAAGACCAAACAATGCAGGTGACCATGACGATTACACCATAGCA
CCAAAGAAAGCAAAAGTCGAACCAGAATAGACAGATATTGATGAGTTGAA
AAGGCATAATATGATTCTTGACCAACAAGTCCTCAAGAGCTCAAATATTG
CACAAAGCTACTGAACACATACAGTACATGCGAAGGAAAAACCATGCTCA
CCAGGCAGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAAGGG
ATCATATTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCTTTG
GAGGGTGAAAAGGATGAAGATGGATCAGGACCACAAACCTTTGCAACATT
AATGAAAAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAAAGA
TGATGAGCGACGAAGAAAAAATTGATATTAGTGGAGAAGAATACGAGAGC
TGGAAAATTCAAGAGCAACTGGTACAGTCACAATTGATGCAACAGCTGCA
GCTCTCCTGGGATCTGCTTCAGAGCTACTGTTAAACACATCTGATGACAA
GAGCATGAATTCATCATCTGAGACAGTTGTAAAAACAGAACCTGTTCTTA
TAGAAAGACCAAACAATGCAGGTGACCATGACGATTACACCATAGCACCA
AAGAAAGCAAAAGTCGAACCAGAATAGACAGATATTGATGAGTTGAAAAG
GCATAATATGATTCTTGACCAACAAGTCCTCAAGAGCTCAAATATTGCAC
AAAGCTACTGAACACATACAGTACATGCGAAGGAAAAACCATGCTCACCA
GGCAGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAAGGGATC
ATATTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCTTTGGAG
GGTGAAAAGGATGAAGATGGATCAGGACCACAAACCTTTGCAACATTAAT
GAAAAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAAAGATGA
TGAGCGACGAAGAAAAAATTGATATTAGTGGAGAAGAATACGAGAGCTGG
AAAATTCAAGAGCAACTGGTACAGTCACAATTGATGCAACAGCTGCAGCT
CTCCTGGGATCTGCTTCAGAGCTACTGTTAAACACATCTGATGACAAGAG
CATGAATTCATCATCTGAGACAGTTGTAAAAACAGAACCTGTTCTTATAG
AAAGACCAAACAATGCAGGTGACCATGACGATTACACCATAGCACCAAAG
AAAGCAAAAGTCGAACCAGAATAGACAGATATTGATGAGTTGAAAAGGCA
TAATATGATTCTTGACCAACAAGTCCTCAAGAGCTCAAATATTGCACAAA
GCTACTGAACACATACAGTACATGCGAAGGAAAAACCATGCTCACCAGGC
AGAGAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAAGGGATCATA
TTAAAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCTTTGGAGGGT
GAAAAGGATGAAGATGGATCAGGACCACAAACCTTTGCAACATTAATGAA
AAAAAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAAAGATGATGA
GCGACGAAGAAAAAATTGATATTAGTGGAGAAGAATACGAGAGCTGGAAA
ATTCAAGAGCAACTGGTACAGTCACAATTGATGCAACAGCTGCAGCTCTC
CTGGGATCTGCTTCAGAGCTACTGTTAAACACATCTGATGACAAGAGCAT
GAATTCATCATCTGAGACAGTTGTAAAAACAGAACCTGTTCTTATAGAAA
GACCAAACAATGCAGGTGACCATGACGATTACACCATAGCACCAAAGAAA
GCAAAAGTCGAACCAGAATAGACAGATATTGATGAGTTGAAAAGGCATAA
TATGATTCTTGACCAACAAGTCCTCAAGAGCTCAAATATTGCACAAAGCT
ACTGAACACATACAGTACATGCGAAGGAAAAACCATGCTCACCAGGCAGA
GAAACGTGCACATCACAATGCCCTTGAAAGAAAACGAAGGGATCATATTA
AAGAAAGCTTTAGTGGTCTAAGAGATAGTATTCCATCTTTGGAGGGTGAA
AAGGATGAAGATGGATCAGGACCACAAACCTTTGCAACATTAATGAAAAA
AAGATTTTTGAAAACTTGTTCACGATATGTCTGGTCAAAGATGATGAGCG
ACGAAGAAAAAATTGATATTAGTGGAGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044560XLOC_044560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071772-proteinTCONS_00071772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071772-exon-scaffold_63-1575043694:993536..993775TCONS_00071772-exon-scaffold_63-1575043694:993536..993775Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1575043694:983133..983171TCONS_00071772-exon-scaffold_63-1575043694:983133..983171Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1575043694:982764..982871TCONS_00071772-exon-scaffold_63-1575043694:982764..982871Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1575043694:982530..982604TCONS_00071772-exon-scaffold_63-1575043694:982530..982604Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1575043694:982064..982112TCONS_00071772-exon-scaffold_63-1575043694:982064..982112Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1575043694:981097..981971TCONS_00071772-exon-scaffold_63-1575043694:981097..981971Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:993536..993775TCONS_00071772-exon-scaffold_63-1510915933:993536..993775Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:983133..983171TCONS_00071772-exon-scaffold_63-1510915933:983133..983171Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:982764..982871TCONS_00071772-exon-scaffold_63-1510915933:982764..982871Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:982530..982604TCONS_00071772-exon-scaffold_63-1510915933:982530..982604Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:982064..982112TCONS_00071772-exon-scaffold_63-1510915933:982064..982112Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1510915933:981097..981971TCONS_00071772-exon-scaffold_63-1510915933:981097..981971Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:993536..993775TCONS_00071772-exon-scaffold_63-1491911889:993536..993775Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:983133..983171TCONS_00071772-exon-scaffold_63-1491911889:983133..983171Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:982764..982871TCONS_00071772-exon-scaffold_63-1491911889:982764..982871Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:982530..982604TCONS_00071772-exon-scaffold_63-1491911889:982530..982604Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:982064..982112TCONS_00071772-exon-scaffold_63-1491911889:982064..982112Clytia hemisphaericaexon
TCONS_00071772-exon-scaffold_63-1491911889:981097..981971TCONS_00071772-exon-scaffold_63-1491911889:981097..981971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:981097..993775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
88.7094	83.6839	244.943	268.387	206.456	161.956	106.842	108.115	84.2535	81.0163	65.5354	64.2191	50.8187	43.5114	52.6314	56.5551	67.9062	60.371	36.2076	57.2019	42.1124	40.8971	69.7437	70.6968	29.9355	35.9304	60.4265	42.1691	51.9904	52.4928
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
[Close]
BLAST of TCONS_00071772 vs. Swiss-Prot (Human)
Match: MAX (Protein max OS=Homo sapiens GN=MAX PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.528e-42
Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:  202 MSDEEKIDISGEEDEDGSGPQTFATLAEKRAHHNALERKRRDHIKESFSGLRDSIPSLEGEKSSRAQILHKATEHIQYMRRKNHAHQTDIDELKRHNMILDQQVRELENSRATGTV 549
            MSD + I++  +E++    P+ F + A+KRAHHNALERKRRDHIK+SF  LRDS+PSL+GEK+SRAQIL KATE+IQYMRRKNH HQ DID+LKR N +L+QQVR LE +R++  +
Sbjct:    1 MSDNDDIEVESDEEQ----PR-FQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQL 111
The following BLAST results are available for this feature:
BLAST of TCONS_00071772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAX1.528e-4262.93Protein max OS=Homo sapiens GN=MAX PE=1 SV=1[more]
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