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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071771 ID=TCONS_00071771|Name=TCONS_00071771|organism=Clytia hemisphaerica|type=transcript|length=2063bpRun BLAST on NCBI protein sequence of TCONS_00071771-protein >TCONS_00071771-protein ID=TCONS_00071771-protein|Name=TCONS_00071771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp MIKIRQINVSILSLRSTFSKCSRQISTNNLTKPNVELEETPSSPLTDTFGRun BLAST on NCBI transcript from alignment at scaffold_63:958179..980858- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071771 ID=TCONS_00071771|Name=TCONS_00071771|organism=Clytia hemisphaerica|type=transcript|length=22680bp|location=Sequence derived from alignment at scaffold_63:958179..980858- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:958179..980858- >TCONS_00071771 ID=TCONS_00071771|Name=TCONS_00071771|organism=Clytia hemisphaerica|type=CDS|length=18447bp|location=Sequence derived from alignment at scaffold_63:958179..980858- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071771 vs. Swiss-Prot (Human)
Match: MOCS1 (Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3) HSP 1 Score: 509.99 bits (1312), Expect = 1.112e-171 Identity = 271/578 (46.89%), Postives = 378/578 (65.40%), Query Frame = 3
Query: 144 SSPLTDTFGRFHNYLRISLSERCNLRCQYCMPEEGIELTKSSKLLSTEEVIYLTQIFAKHGVEKVRLTGGEPLLRKDIAEICERISAIDGIKSIGLTTNGITGKRHFQKLSDAGLTHVNISLDTLIPEKFEFVSRRRGHHKVMESIDRALDLPFHSVKVNCVVMKGLNEDEILPFVDFTKDKKVDIRFIEYMPFDGNKWNIQKFYPYQEMLKDISQKYPTLYKIEDDKNDTSKAYKVPNFEGQIGFITSMSQNFCGTCNRLRITADGNLKACLFGPNEISLRDMMRSGASEEELTQIISGAVXXXXXQHA-----VKIRNESGIYLGSTLLSPQ------------------LNKRRELDYKLNALLFG---RNNLSVAQLR-------------------SYCTQNSKLTHVGDDG------KLKMVD---------VGSKTVTKRTAIASGVVQLNTEIIQLIKENSIKKGDVITVAKVAGIMAAKRTDQTIPLCHNIALSSVNIDIDVEG-ECGLRIRAVTIAGDKTGVEMEXXXXXXXXXXXXYDMCKALSHDIVIKDIRLEQKTGG-KSDYMR 1691
S+ LTD+FGR H+YLRISL+E+CNLRCQYCMPEEG+ LT + LL+TEE++ L ++F K G++K+RLTGGEPL+R D+ +I ++ ++G+++IG+TTNGI R +L AGL+ +NISLDTL+P KFEF+ RR+G HKVME I +A++L ++ VKVNCVVM+GLNEDE+L F T+ +D+RFIEYMPFDGNKWN +K Y+EML + Q++P L K+ ++++ T+KA+K+P F+GQI FITSMS++FCGTCNRLRITADGNLK CLFG +E+SLRD +R+GASE+EL +II AV +KK+QHA +++N I + L+ P L R ++ L G +AQ R S C G +L VD VG K T+R A+AS VV L +L+++N +KKGD + VA++AG+ AAK T Q IPLCH++ALS + + ++++ ++I+A A TGVEMEALT+ +VAALT+YDMCKA+S DIV+++I+L KTGG + D+ R
Sbjct: 58 SAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMKNRPMILIELFLMFPNSPPANPSIFSWDPLHVQGLRPRMSFSSQVATLWKGCRVPQTPPLAQQRLGSGSFQRHYTSRADSDANSKCLSPGSWASAAPSGPQLTSEQLTHVDSEGRAAMVDVGRKPDTERVAVASAVVLLGPVAFKLVQQNQLKKGDALVVAQLAGVQAAKVTSQLIPLCHHVALSHIQVQLELDSTRHAVKIQASCRARGPTGVEMEALTSAAVAALTLYDMCKAVSRDIVLEEIKLISKTGGQRGDFHR 635 The following BLAST results are available for this feature:
BLAST of TCONS_00071771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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