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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071764 ID=TCONS_00071764|Name=TCONS_00071764|organism=Clytia hemisphaerica|type=transcript|length=2599bp
CAGCTACCAACAATTACAACACTTTCACAGCTGCAATGAAACCTTCCCTA
TCCACTACTACTAAATCATCACATCTGAACGAGGCCAGTATTTCTGCTGT
GTACTTTATGGACGACAATATGACACCTTCAATAAGAATTAATTCTTCGG
ATCGTGTTTCCATCAGTAATGACCCACTCAAGGAGATACTCTTGAAGAAA
GCAGGTGCACCAATAGGCGTTTCAATGGATGGTTCATCGATATACAGTGA
TGAAGAAGAATCGGATTTTGATAATGATTCTATTCGACAATTAGAATGGG
ATTGTTTGGAAAGGAATTTATCCAATGTTTTAAATGGTGGAGGTGATGAT
CGATCTTCAACCACTGGTAGCAAACTTGATAAAGATGAAGCTTTCTATTT
GTGAGTCTTCCACAATctgattgggcttttccaaaaaaaagcagtatacc
ccctgttgaggaagTCCATTTCCGTTCAAAGGGGGgttaaggtttgatat
gtggcggaattccatagggagatacaaaatctgtcaaaaataactgcttt
ttaaatcctactaaaattcaaaattccaaAGGGgcttaaacctgaaattg
cctggaattccagggagttacagcatttccagccatagagagatggacct
cctcaaaagggggaaaatggtttttttctggaaaagcccattatatTCCG
AGCTGATATTCAACGTCAAATGAAGTTCACCTAACGCCCATAACGTCGGT
TTAACGTTAGGTCAACGTTGGAACGATATTGTTTACCAGCTTGAATGGAA
GTTGGCTTGGTTCGAGTTTCAAGGTTTGAGTGATGTGGNgggcccccccc
cccgtctattcgggagacaagagtatagTGTTGTACAGAGGAGGCAACTA
CCCCCAACCATTTGACACCGAATATTAACAGACTTTTTGTGCTTGCTTCG
CTCGTATTATAGGGCGTTAAAAAGCGCCAAAATTCTTAGAATCGAATTTA
ATTACCTCCCCAGTGAGCTTGCCCAAATTTAGATCAACCCATCACCTCTT
GGTACTGGTATACTCGAACTCAAACTCCTAGTGACGTCAGAATAACTGTA
CTTTTTGTGGGGGCTCTTTTGAATACATTAGTTTGGTTGATTATATGGTG
GTTCTCAGACATTTGCGTTGCCGTTGGTTAATATATAGTAAGAAGAGTCT
ATTTCAGTTAACTTAGTTTTGCTTCAGATGGAAAATTCTCTATTGAAAGC
CGATGGAAATATCATCAAGTTAGACCAGTTAGCTTTGTTTTGAACTTTAG
TATAATTTAGTACAGTTAAGTTAAGTTGAGATTGTTTATTGCCCAAGCGT
tcctactactactactactactactgaAAAAGCAGGAATGAGTGGGACCT
GTTCCCCGATGGGGAGGGCTCATCATTGTCATAGCATCATATAATCATCA
TATTGAATTCAAAAGGGTTCCAAATAACAGTAGCGTATACAgaaggggcg
caaaatttgcgtaggagagcagatttttatgacactgtaattatctattc
ataatataaaaatagaattattgtgtcataaaaatctgctctcctacaca
aattttgcgcccccttGCCTACGCTCCTGAAATAATGGGTAAGAAAATTC
CACAATAGGAAAATTGTCCTGAAAATTCCTCCAATAGGAAAGGAGGAAGC
TCTAAACAACGATAATTCTCTTTGGGTTTCTGAGCTTGATTTATTCAATC
TCCTTTGGTGGCGAGTTCACTCATTTTATGCCCACTTACTATAACTTTTT
GCACTCCGTCAGTGGGAAAGTAGGCTACTTGCATCCACTagaacggattc
gtgctccttataatACCTGCtgttttgtagaggtctacgATTCAGACTAG
TGGGAAAGGTCGCGtgaaaatttcagtgaaaatacaattcgccaaattag
catttcaaatttttttttactgttaTATACATTTTACAGCTTTTTTATGA
GAgcttttttattataaatttttatttttttcggcTTTCTTTCactagtt
taggtataaacttatttcttttctacatagtttatacctaaactattCTT
TCActctctttatttttttcttctcaactgtacaaatttttgctgacttt
CCCAATTGGAAATCTTTAAATCTTTTTGGTGATAAGTAACCACACCATAG
GGATTTCGTTACTCGCTGTTTTGTGAGGCCATTATTAACTCTAATAGctt
taaaataattcaattCCCAAAAAAATCTCATAATGTTTCCATTAACGGTA
GTTCTCTAACCCATATCTCCTTTTGTTTGGTATAATTATCATGACAACCA
AGATTTCCTTTTGGGAATTAAAGACAACGAAtgtatttacattttttatt
tattttatctaatgtttataaaaaattgtaaatataatTTCTTCAGAAAG
TTTAGTATTTCCAAGGACCCCGAAAAAGCAAAATATTAAAATTGTACAAA
AGTATTTTAAGTAAATATGATTTGTATATATAATTCAAACTTATGTATCT
AATactttttcctcatttttgtttttgtaaaaatatgtaAGAATTTAGC Run BLAST on NCBI transcript from alignment at scaffold_63:922541..925748- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071764 ID=TCONS_00071764|Name=TCONS_00071764|organism=Clytia hemisphaerica|type=transcript|length=3208bp|location=Sequence derived from alignment at scaffold_63:922541..925748- (Clytia hemisphaerica)
CAGCTACCAACAATTACAACACTTTCACAGCTGCAATGAAACCTTCCCTA
TCCACTACTACTAAATCATCACATCTGAACGAGGCCAGTATTTCTGCTGT
GTACTTTATGGACGACAATATGACACCTTCAATAAGAATTAATTCTTCGG
ATCGTGTTTCCATCAGTAATGACCCACTCAAGGAGATACTCTTGAAGAAA
GCAGGTAATGATGATAGATCAATATACAGTGGCTATTTCTAACTTCTGCT
ATTTCAATTTATTTCTAGTGGCCGTCAAGAAGAAACAAACTCTTATGTGA
TTAATTGTAGGGGGGTCATTTTGCAATTAAATTTTTAAATCCCCCTATAT
CACTTTATAATGACCCCCCCCCCATTTCAAGACCTTTTTGCTATGAAATG
CCAAAATTTGCCCAAATTCTTCATTTCCCTAGGGATTTTTAGCAAAATCA
GGTCAATAGCACCTAATTATGACCCCCCATTTTGTTGATATTTATCTGGA
CTACCCACCCAATGCTTATCCCTCCCCACAATTAAGCACGCAAGAGTACA
TTCGAAACCCTCTATAATTCGAAGAAATTAGATTTCCTTTCCTGTTTGAG
TTTGAATTTTACCCGAATTCGCGCTCCATTCCAAGGACGACCTCCAACAA
TGTAGGATGTTGAAAAGCCTTGTGGAATTTCATTAAAATGGGTTTGAGTG
CAGAAAGAGTGTGGGAAGTCTGTTTCTGGCTAGAACTAGTTTATTATTAA
ATGATCACGGGCGATCATGTGAAACTGCATATTAAATTTAGGCTCGTTTA
CTATCTCTCTCAGGTGCACCAATAGGCGTTTCAATGGATGGTTCATCGAT
ATACAGTGATGAAGAAGAATCGGATTTTGATAATGATTCTATTCGACAAT
TAGAATGGGATTGTTTGGAAAGGAATTTATCCAATGTTTTAAATGGTGGA
GGTGATGATCGATCTTCAACCACTGGTAGCAAACTTGATAAAGATGAAGC
TTTCTATTTGTGAGTCTTCCACAATCTGATTGGGCTTTTCCAAAAAAAAG
CAGTATACCCCCTGTTGAGGAAGTCCATTTCCGTTCAAAGGGGGGTTAAG
GTTTGATATGTGGCGGAATTCCATAGGGAGATACAAAATCTGTCAAAAAT
AACTGCTTTTTAAATCCTACTAAAATTCAAAATTCCAAAGGGGCTTAAAC
CTGAAATTGCCTGGAATTCCAGGGAGTTACAGCATTTCCAGCCATAGAGA
GATGGACCTCCTCAAAAGGGGGAAAATGGTTTTTTTCTGGAAAAGCCCAT
TATATTCCGAGCTGATATTCAACGTCAAATGAAGTTCACCTAACGCCCAT
AACGTCGGTTTAACGTTAGGTCAACGTTGGAACGATATTGTTTACCAGCT
TGAATGGAAGTTGGCTTGGTTCGAGTTTCAAGGTTTGAGTGATGTGGNGG
GCCCCCCCCCCCGTCTATTCGGGAGACAAGAGTATAGTGTTGTACAGAGG
AGGCAACTACCCCCAACCATTTGACACCGAATATTAACAGACTTTTTGTG
CTTGCTTCGCTCGTATTATAGGGCGTTAAAAAGCGCCAAAATTCTTAGAA
TCGAATTTAATTACCTCCCCAGTGAGCTTGCCCAAATTTAGATCAACCCA
TCACCTCTTGGTACTGGTATACTCGAACTCAAACTCCTAGTGACGTCAGA
ATAACTGTACTTTTTGTGGGGGCTCTTTTGAATACATTAGTTTGGTTGAT
TATATGGTGGTTCTCAGACATTTGCGTTGCCGTTGGTTAATATATAGTAA
GAAGAGTCTATTTCAGTTAACTTAGTTTTGCTTCAGATGGAAAATTCTCT
ATTGAAAGCCGATGGAAATATCATCAAGTTAGACCAGTTAGCTTTGTTTT
GAACTTTAGTATAATTTAGTACAGTTAAGTTAAGTTGAGATTGTTTATTG
CCCAAGCGTTCCTACTACTACTACTACTACTACTGAAAAAGCAGGAATGA
GTGGGACCTGTTCCCCGATGGGGAGGGCTCATCATTGTCATAGCATCATA
TAATCATCATATTGAATTCAAAAGGGTTCCAAATAACAGTAGCGTATACA
GAAGGGGCGCAAAATTTGCGTAGGAGAGCAGATTTTTATGACACTGTAAT
TATCTATTCATAATATAAAAATAGAATTATTGTGTCATAAAAATCTGCTC
TCCTACACAAATTTTGCGCCCCCTTGCCTACGCTCCTGAAATAATGGGTA
AGAAAATTCCACAATAGGAAAATTGTCCTGAAAATTCCTCCAATAGGAAA
GGAGGAAGCTCTAAACAACGATAATTCTCTTTGGGTTTCTGAGCTTGATT
TATTCAATCTCCTTTGGTGGCGAGTTCACTCATTTTATGCCCACTTACTA
TAACTTTTTGCACTCCGTCAGTGGGAAAGTAGGCTACTTGCATCCACTAG
AACGGATTCGTGCTCCTTATAATACCTGCTGTTTTGTAGAGGTCTACGAT
TCAGACTAGTGGGAAAGGTCGCGTGAAAATTTCAGTGAAAATACAATTCG
CCAAATTAGCATTTCAAATTTTTTTTTACTGTTATATACATTTTACAGCT
TTTTTATGAGAGCTTTTTTATTATAAATTTTTATTTTTTTCGGCTTTCTT
TCACTAGTTTAGGTATAAACTTATTTCTTTTCTACATAGTTTATACCTAA
ACTATTCTTTCACTCTCTTTATTTTTTTCTTCTCAACTGTACAAATTTTT
GCTGACTTTCCCAATTGGAAATCTTTAAATCTTTTTGGTGATAAGTAACC
ACACCATAGGGATTTCGTTACTCGCTGTTTTGTGAGGCCATTATTAACTC
TAATAGCTTTAAAATAATTCAATTCCCAAAAAAATCTCATAATGTTTCCA
TTAACGGTAGTTCTCTAACCCATATCTCCTTTTGTTTGGTATAATTATCA
TGACAACCAAGATTTCCTTTTGGGAATTAAAGACAACGAATGTATTTACA
TTTTTTATTTATTTTATCTAATGTTTATAAAAAATTGTAAATATAATTTC
TTCAGAAAGTTTAGTATTTCCAAGGACCCCGAAAAAGCAAAATATTAAAA
TTGTACAAAAGTATTTTAAGTAAATATGATTTGTATATATAATTCAAACT
TATGTATCTAATACTTTTTCCTCATTTTTGTTTTTGTAAAAATATGTAAG
AATTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071764-exon-scaffold_63-1575043694:925545..925748 | TCONS_00071764-exon-scaffold_63-1575043694:925545..925748 | Clytia hemisphaerica | exon |
| TCONS_00071764-exon-scaffold_63-1575043694:922541..924935 | TCONS_00071764-exon-scaffold_63-1575043694:922541..924935 | Clytia hemisphaerica | exon |
| TCONS_00071764-exon-scaffold_63-1510915933:925545..925748 | TCONS_00071764-exon-scaffold_63-1510915933:925545..925748 | Clytia hemisphaerica | exon |
| TCONS_00071764-exon-scaffold_63-1510915933:922541..924935 | TCONS_00071764-exon-scaffold_63-1510915933:922541..924935 | Clytia hemisphaerica | exon |
| TCONS_00071764-exon-scaffold_63-1491911889:925545..925748 | TCONS_00071764-exon-scaffold_63-1491911889:925545..925748 | Clytia hemisphaerica | exon |
| TCONS_00071764-exon-scaffold_63-1491911889:922541..924935 | TCONS_00071764-exon-scaffold_63-1491911889:922541..924935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:922541..925748 - |
Blast
The following BLAST results are available for this feature:
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