|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071753 ID=TCONS_00071753|Name=TCONS_00071753|organism=Clytia hemisphaerica|type=transcript|length=2812bpRun BLAST on NCBI transcript from alignment at scaffold_63:814336..840693- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071753 ID=TCONS_00071753|Name=TCONS_00071753|organism=Clytia hemisphaerica|type=transcript|length=26358bp|location=Sequence derived from alignment at scaffold_63:814336..840693- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071753 vs. Swiss-Prot (Human)
Match: CACB2 (Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3) HSP 1 Score: 401.749 bits (1031), Expect = 1.126e-126 Identity = 217/430 (50.47%), Postives = 274/430 (63.72%), Query Frame = 3
Query: 396 LNKSSGDEFDGRKTSGTSSEYGDGEDLEALRILALEKLQA----ARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNKDWWIGRVVKEGHNIGFVPSPDKLESIR----QSGVSGKL-------------------KMRQSSTSSNMNL---------HDDPQNQRSPLGEAGGNNSFDDETVNSPVRXXXXXXXXXXXXXXXXXXXAQKGKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKHRFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVNRIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIKSRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEAYWRAAVP 1577
+ + S D + R + S+ ED EA+R A + QA A+T+PVAFAVR N Y+ + +DD PV GMA+SFE D LH+K+KFN DWWIGR+VKEG IGF+PSP KLE++R Q GK + + SS +++ +D P N RSP A +V SP ++++ + FKK E PY V+PSMRP++ VGPSLKGYEVTDMMQKALFD+LKHRF RI TRV ADISLAKRS LNN ++ ++SN ++ LAEVQ E+ RIFEL R+ QLVVLD DTIN+P+Q+ KTSLAPIIV +KI+SPKVL RLIKSRGK+Q KHLN+QM+AADKL+QC E+FDV+LDENQLEDACEHL ++LEAYW+A P
Sbjct: 69 VRQGSADSYTSRPSD---SDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAEENDIPANHRSPKPSAN--------SVTSP--------------------HSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAII-ERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHP 466 The following BLAST results are available for this feature:
BLAST of TCONS_00071753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.