TCONS_00071751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071751
Unique NameTCONS_00071751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071751 ID=TCONS_00071751|Name=TCONS_00071751|organism=Clytia hemisphaerica|type=transcript|length=2601bp
CAAGCATCGAAACTCGACAGCTCTTTATATTCCAGAAAGTTTTGTAGAAC
AAAAAACGGGTTTCGATCTCAACCAATCATTTAGTTCCATCATGTTAGAG
GAGATGTTTTTCCCAACTTTTGTCTCGTCACTTTTTTCACACTATTTTTC
CTCTGGTGAAGATGATGGTGATATTGATGATGGTAGCATAATTTCTAAGG
GTGACGAATTCGATGGACGTAAGACGTCGGGAACATCATCCGAATACGGT
GACGGCGAAGATTTGGAAGCACTCCGTATTTTAGCTTTGGAAAAACTTCA
AGCTGCAAGAACACGACCGGTAGCATTTGCGGTACGAGCGAACTACGGAT
ACAACGGCTCAGAAGATGATGATTCGCCGGTACACGGGATGGCCGTCTCT
TTCGAAAAAGATGATTGTCTTCATATCAAAGACaaatttaacAAAGATTG
GTGGATCGGGCGCGTCGTCAAAGAAGGGCACAACATCGGATTTGTACCCA
GCCCCGACAAATTGGAAAGCATTCGACAATCAGGTGTATCAGGCAAACTG
AAAATGCGCCAATCTTCGACCAGTAGCAATATGAATCTTCATGATGACCC
ACAAAACCAAAGATCTCCGTTGGGTGAAGCCGGTGGTAACAACTCATTTG
ATGACGAAACGGTCAATTCACCAGTTCGTAACGTCTCCACTGAATCCAAT
AACACCAATAATAACAACACCACTAATTCACTCAACGctcaaaaaggcaa
aaaaggaatcttcaaaaagAACGAACAGTTGCATCCGTATTACGTCATCC
CATCGATGAGACCCATCATTTTCGTGGGACCTTCCCTCAAAGGATACGAA
GTGACAGACATGATGCAAAAAGCACTCTTTGACTATCTCAAACACCGCTT
CTCCGAAAgAATTATTTTTACCAGAGTGAACGCAGACATCAGTTTAGCAA
AGCGTTCCAACTTGAACAACCAAAACAGACAACCAAACTTCCCAAAGAAA
TCGAATGGACAAGCTGGACTTgCTGAAGTGCAAGAAGAAGTGAACCGTAT
TTTCGAATTGTGCAGAAGCTCACAATTGGTGGTTCTTGACTGTGACACCA
TCAACAATCCTTCACAAGTCATCAAGACGTCTCTCGCTCCCATCATTGTC
GCCATTAAAATTGCATCACCAAAGGTCTTGACTCGTTTGATCAAATCAAG
AGGAAAGAATCAAGTCAAACATTTGAACATCCAAATGATCGCTGCTGACA
AACTCAGTCAATGTAACGAGGAAATGTTTGATGTTGTGTTGGATGAGAAC
CAATTGGAAGATGCGTGTGAGCATTTAGGAGAATTCTTAGAGGCTTATTG
GAGAGCTGCCGTTCCTGGTGCACAAGAGGGCTTAATTTCTCAAGAAAACG
GTGGTTTTGTTAACCAAGGTGGACCCAACGGGGCCGGTTATAACGGCGTC
GATCAGTACGGTACTCCGCAACGTAATTTAAGGACAGCTCAAGTGTGAAG
AGCATTTACGTGATGTTGGGAACCGTGaagattcttttttttgttattta
caagaacaaaaaataaaaatgaggaaaattatTGACGGAGAGATTTGTTC
GTCAAAAATACATCGGATGGACGTCATCGGTAGTTTTGTTTGAGATTTGG
AGGCGAATTTATCGGGCTATGCCGCTGTCTAAATCGACGTTCAACATCTA
CGGTTGTTTCGCAAAATTCTGTAAAAGTGACATGAAATGTTAATACGACA
ATGAacattgattttgaaaaagaagctTCNCTACTGTTGTTTCGCAAAAT
TCTGTAAAAGTGACATGTAATGTTAATACGACAACAAGcattgattttga
aaaagaagctCAAAGAGGAAACTTTTGAAGAAACAAACGAAATGTTGAGG
AAACAGTATCATAagtgaaaaatctcaaaacaaaaacacttttaaagATA
TATTAAAATTAGAAGACACTTCTTATGCTTGTTGctgataagaaaaaata
aaattaaagattaaagaaaattttgtagAGAAATTTATTACCATTAAGAT
ATCATGAAATGCTTGCCGATGTGCTTTAGCTTTGATTGACGAAGAATTTG
GCACCGAGATCCCAAGAAAGACGTATTTCCTAAACCAGCCTAACTCTTGA
GTCTGGGAAATATCAATATTGGAGTAATCAACTATCAATTAAATTCCAGT
CTGAGaattctttttataaattttcgGAAATTTATTTCAATAGTGTGATC
AAACTAGATATTTACCGGATGTTTTGTGGGAAACAGTTGCTGATTGGACG
AAAGAcattattttttatgatttatattttttgttcgaattttaTGATTA
TTATTTAGTATTCAAGTTGTAAATTGTTTATATAATTATTACATATATTA
TATTTCcattctttttgtttcaaatttatatGAAAATTGAGCTCCACAAG
TAGCTTTTGAAAAACGAGTTAAATAAATATGcaatatcaaaatttattca
attcAGAAATTTCTCCTGATATATTTTTTCCTtaaagttttttgcaattt
tttgaaaattcttttttctcgaatttttttcgattcatttcttattttca
t
Run BLAST on NCBI

transcript from alignment at scaffold_63:814336..828145-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071751 ID=TCONS_00071751|Name=TCONS_00071751|organism=Clytia hemisphaerica|type=transcript|length=13810bp|location=Sequence derived from alignment at scaffold_63:814336..828145- (Clytia hemisphaerica)
CAAGCATCGAAACTCGACAGCTCTTTATATTCCAGAAAGTTTTGTAGAAC
AAAAAACGGGTTTCGATCTCAACCAATCATTTAGTTCCATCATGTTAGAG
GAGATGTTTTTCCCAACTTTTGTCTCGTCACTTTTTTCACACTATTTTTC
CTCTGGTGAAGATGATGGTGATATTGATGATGGTAGCATAATTTCTAAGG
TACCTTTTAGGTTCTTGATTTCTTAGTGTTTCTTAGTGTTTCTAAGAATA
CTTCTTTCACCCATTGGCTGGAATTGTTCTTAGGGGTCAGCTAAGATCGA
GCCTCATGTTTTTATAGAATTGTTCTTATAAAAAACGTGTATTCTACAAA
TTTACGGGAACGGGAGGTCTGTTTCAACGGGAACATGAGGTCTGTGGTGA
TTTATTTACACAAGTCGAAAAAAGGGTTAACTCTATTATAAATTGTTGGG
CCGGGGGGGGGGCAGTCTGGCAAATTGACCGACAGGTATGTGCGGCGGTT
AAGGATATGTTTTTCAAAATTGCAGAAATGCACTGTAAGGGTGGACTTTT
GATAGATTCACTGTATGGGTGGAAATTTCAGCAAATCTAAAAGAGTTTAA
AATTTGAAAAAGTGCACTGTAAGGGTATGAATTTCACCGATTTCTTTCTG
CGCTATAAGGGTGCGATTCTAAAAGCCAATTTTTTCGCCGCACATACCGT
CAGTTGCTAAACCCACTGCCCCTCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTGTTGGGAGATAAGGAACCCAGTGCTTATGTAATT
GGTTTACCAAAGGATTAATGGAGAATTTACTCTTTAAAATTCAATATTTT
CACAATATTCAACAAGAGATGTTTATGCAAAAGTATCTCCAGAGCTTCAC
AAGGATATGTAGGACACACGGTTAATGGCAATATAGCGTTTTTGGCGCTT
TAAAGAATTTTTTCGGATTTTAAGTATGCCCTGGAATACTGTTTTTCAGT
CCCAACTTACCATCAGATTTATCCGGAATCAAACTAGCTTAGATTTAGAT
TTCTAGGCTATGTTCAAGCCTTTTTTGTTACTTTTAAAATGAATCTAATG
TTTACGATTAAGTGGTGGTCTTCTATAACTATTCGAAAAATTTAGATGAT
GATGCATTGAGAAAAATAACTGATTAGACACTAACTGTGCCATAGAAATT
GGTGAATTGATGTTTGGAGTGTTTCTGAAACCACCTCCAAATGTTTCTGG
TTTAAAACAACGTAAATATTTATAGTCAAGATGGGATAACATTTTATTCC
TTTCTTAGTTCGTCGGAGGGAAAAGAAAAAAAAAATTAATCAGTTTTCTG
TTTTATCTCTTTCAGGAAAATATTCTCATTTTTNCAAAAGAAAAAAATTT
AATCAGTTTTCTGTTTTATCTCTTTAAGGAAAATTTTCTCATTTTTTTTG
GTCTGCTAAAATTTCATAGACCATTTTTTGCACCTTTGAATTTGTCATTG
ACCATATGGGGAGATTTCAATAATTATTTTTCTTTTTTTTATTTCCTTTC
AAATGACATTCGATGAAATTGATGAAGATGACGATTGTTCAGAATGTCTG
AAATGCAATTTCATGTCAGAACAATGGATGATTTTCTTTCCTTTGCCTCA
TACATTATGCCCTTTGGCCCTCTTTCTATTTCATTTTCATATTGCTTGTC
TTTTTAAATCTTATGTTTGTGTTGTTCGATGTTCAAGAATTTGTAACCAG
TTTATTACTTTAAATGACAGTTGTGTCGATAGCTGTGTCGATATATTTTA
TTGCATCTTCATTTAGGATTGCTATTCGTCGTTGTAAAACTTCTTTATCC
CAATCCCAAAAAAGCAATCATTTTTCCTATGGACCTATATATATTTTATC
TTTTACTTTTCTTGTTATCTTATTGTTTTGAATGCAATGTTAGTGGTAAA
AGCTTTACCCACGCTTTCTATTTTATCTTTCTTTGGTCCAATTCTTGGTA
TTAATGTTTCCTTTTATTGTTATTGTAATGGTTTTGCAATGTATTGTAAT
GGCTTCACCCACGGATTTTATTTATACCTTATTTTAGGCTTATTTCTTTG
TTTCCAGTTATTGTTTTTCAACATAGGCTGGTGACGTCGGTTCCTTATTA
TCTTTGTTTTTCTTCTTCATTTTCTTATTCTTGTTGTTATCGATCTATAT
ATCTTGTGGAATGCATCATATATTTCTAGTTCTTCTAAGCACGTACAGTA
CTTATTGGCAGGCTTTTCTACTACAAAAAGGGCTGTTATTCTCCTGTCAA
CTATGTTTTTGGATGGTTTTGACGTCCTTCGCTCTGTTCCACTGTCGTAT
CGATTAAAATTTATTTTTTATAACTTTTTCAATATACATTTTTCATTTTA
TCCTTCTTGTTTTTTTTTTTATTTTTCTTTTGTTTTCTTCTTTCATTTTT
TGCCCATTATGTATTGAAAGAAATCCAAGATTTTCTGATGTTTTCGATGA
ATGGGTCGATGAAAAATAAAGATTTTTTTCCCTCTCAGCTTGAATCTTTT
TTAACCTCTCTTTAAAGTTTTTTGTGGCCTTAGGTTTCTTTTTAACTCGT
ACTAGTCTCTTTTTCGGCCATTTTAGAGCAAAAATTTGGTCGTAATAGGA
GAAAATCTTGAGGCCTAGACTGTAAGCCACAGTATGAAAATAGGAAAAAT
TAGAGCAAAATATCTTGTATTTTTTCTTCACGAAGACGTTGTACAAGCTG
GCTTCTCTCGGTTTTTTTCTCCTGCTTTTTTGAATGTCAAAATTGTCTGC
TGTTATGTTTTTTTGTTATGCTTTTCACTTTGGGGAGGTCTGGCAAAAGA
AAACACTTCACGTTTATAACTAATCAATCTTTCGAAAAAGAACGAATTTG
AAAATGATTTTGGTTTCGTTTTAATTTGAAATTTTTGGATAATGAAAGAA
GGAGGAGACTAAAGAGTCTGGAACTAAAATTATCTTTTTTTGTTGAAATT
TGTCAAAAATTTTGTTTTAATTTTGCGTAATCTAGGACCAAACACAATCG
TGCAATCAATAATTCCACCTTCAAATTTGTTCAAATTATATCTGTTTTGC
TTGTTTTTAATGGAGTTAAATTAATCTGCTCGTCGTTGTGATATGGAAAG
AATGGTTAGCTGGAAGAAACGGCGTACCTTGTTTCGAAGACAAAATAAAT
TGTTGAATATTGATACTTATTTGGCAGTGGAGAGCAGAGACGATGCATTC
TTTCGAAGTCCGTTTTTCATGGTAATGTGAAAAACTCTAAATCATTGCAT
TTTTAATTGGTTTTTAATAGCAAGAGTTTGGAAATCGTTTACTTATTCGC
CCTAGTTTGAAAAAGGATACGAACTAAGTAACTTATCAGTGGGGGTCTGG
GTTTTAGTTACTGTGGGAAAAATTTCGTCACCCAGAGACATTTTTTTATT
TTTCCTTGGCCAAAATTTCGAATTCAAATGTTCTTAAAATTCTGTTCAAA
TGTTCTTATAAGTATAAGGAAACTATCCACCGGCAATTTACGAATTAAGG
CAAGTCTTCATTGTCATAAACTACTTAAGTCGCTAGTAATAAGTTTCGTT
GTTTCGAAATGTTGATTTTATTAGATCTATTAAAAACTTTCCCCTTGTTT
GTGTCTCAGACACACCATCATATATTATGCAATATCTCTAAACTAAAGTA
AACTATCTGTATAACTCTAACACGGAAAGTCTTTCCATAAGCCTCTAATA
AGGTAAGTAAAGTAAGTAAACCCAGCTCCATCAGTAGTTGGTCTAAAAAC
AGATTTTAAGAATCAGGATTTTTAATCAAACGAAGCGTTACTACAAAGAT
GACAACATTTGAACTGGTTTTGTTAATTTGGGCATTTCAAAGTCTTATCA
TTGCATGTATGTGTCTGAATTTCAAGCCGGTTTGGATTGGGAGACTGGGC
TCTAAAGTTCACCATCAGGAACTTATGAATTAGTTTTTGGTTGATAAATT
TCAATCATGAAGATTCTTGATTGACATTTGTTTTTTTATCTCCCTTTAGC
TTGAGACCCTTGAGGTTTTTTATTTGTGAGTTTTGTGTGAATAAAAATTA
TTGGAAAATATCTCAAAATATTTGTTTTCATTTTCAAGAAAAAAAATTAT
TTTCAATTTTTATTATTTTTCTTCATCTCTCGAGATAATATTTTGTTTAA
ACAACATAAGAAAATTTTCAAAATCATGATTTTTTCCACAATTATTTCTT
TCTTCTTTTGACCTCACAAGTTTAGTTAAATGTTTGACACCTTCATGTAA
ATCTAGATGCAATACCCCCGGGAAATTATCATTCGTTCCTTTTGGTTTAA
CCTTTTTAAAAATATGTACCGGGGGCTCAAAATACATAGAATAACACGGG
GAGGGGATATCTTCCAAGGCTTTTCAATTTAAATTGTTACTNTTACCGGG
GGCTCAAAATACATAGAATAACACGGGGAGGGGATATCTTCCAAGGCTTT
TCAATTTAAATTGTTACTGGTTATTTCGCCTGAACTATGGAATGCTGCGT
TTGGAGCGAAAAAGTAAAATCTATTTCTTGATGATCTGAGAACCTTGGGA
TTAAATGAATCTCATTTCAAAATCTGTTTAATATCAAGCAAACTAGACGG
AGTTTTGGGAAGGCGAGGCCAATCTCATTAATAGTCTCAACCAATGACTA
AACCAACCCTATTATATATTAAACATTAATCAAGTTGTTTCTTGCGTGAA
ACTTTGCTTTTTTATACTGTATGGACAAAATAAAATATATTTAGATATCC
TTTGTAAGTTCAAATATTAAATCATCTGACTGTGTCCTTATCAACCAATT
TTTGGTTATAAAGTATGTTAGCCGATAACGATCCGTAATAATTCAGTATA
ACTACCCAAGCTCCACGAAAACGACATCGAATTAACCACGTCTGATTTTC
TCTTCCGTAGGGTGACGAATTCGATGGACGTAAGACGTCGGGAACATCAT
CCGAATACGGTGACGGCGAAGATTTGGAAGCACTCCGTATTTTAGCTTTG
GAAAAACTTCAAGCTGCAAGAGTGAGTTCGAAATTTATTCCTAAAATATA
GATAGTATCTAGTTATCAGGCAAATTTGAATCATCGACTAAAGTCCCTTT
TTGAGCCATAATAAAGCTGCCAAAGCTTTTGAAACAATTGTCATCTTAGT
TGACAAAATCTTGTTGTTCTTTAGGCCTTAAAAATGGTGAAATAACTGTC
AAATTGTCTGTCAACCCTTACTCCACAGTTGAATTGACGTCAAATGACTC
CATTTGACCCTGGTAGGCTTGAACCCCCTTTTAGCACTATGTAACGCAAT
CAGGTTGATAGGTTTTTTCCTTATGATTTTATTATATTGTTATCCCTATC
CGTATACAGACACGACCGGTAGCATTTGCGGTACGAGCGAACTACGGATA
CAACGGCTCAGAAGATGATGATTCGCCGGTACACGGGATGGCCGTCTCTT
TCGAAAAAGATGATTGTCTTCATATCAAAGACGTAAGTCAAATCATGCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGACTGTCTATTTTTCTG
TATATCTATCTCAGCAGTCTCAACAGCGTTAAAAAAACCTTCTTCTGTCT
CAGATGAATTTCCGTCTAAGTGAAGTATATATAAATAGGTTTTCCGTCTG
AAAATTCTGCATAATTCACCCAAATTTCAAGAATATGTGCTAATTTGCGT
GAAATCCATTTTCCGTCTTAGACCGAAAACTTTGCTTCGACCACTAATTT
TCTAAAATGACCCGATCAGGGTTCTCTTTAGGCTGCTGGCATCCACTAAC
GGATTCGTGCTCCTTATAGAGGATGCTTAATAAGCTATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCACCAAATCATAGATTGGAAAATATATTT
GGATTTTGAAAAAAAAGTAGGCGGAAGGAAGTTTGCTTGTTTTTCTTCCT
CCTTTCTTGTTTAATGTGGAGGTTTTGTAAAAGATGAGAAATTATATTTA
TTGAATTTAAGTGCCCTGATGTATCTTTTGTGTGCACCAACAAAATTTTG
CTTCATAAAACTACATTTTGATGCTTTAATTTGGACTTGCATGAGTGTAT
AATTTCTTACCACACTGGATTCGTTGATCACTTTGGCTCCAGATAATTGT
TTTGTCAGTTCTACAGATATGTTGCAGATTATTTCAAGGTATTCTAGTTA
TGTATATACAGTACATTTTGGGGGTCATATTGAATATTTCTGACATTACT
TCTTTATGATTCTACAAAACACAAAAGGGAATGTTGTTGTTCCTTCAACA
AGGGCCCTTAAATGTTAAAACAAACAAAGAACTTTTCTTCAGCTTTGGCA
TTTCACTGTTTAATACTGTGTGGCCTTTGTATCTTTTCAGGTACTTAGCT
CCAATTCTTTGAAGAGATTGGAGTGTTTCTGGTTGTTTTCTTTCACTTTT
GTGTTCATATTTGTATTTTTTGAGCTTCGACCGAAGAGCTGATGGAAAAG
TTTTGATAAATTTACAGACCAGATATCTTATAAAAGCAAAAGTCAAAAGT
AAATCTACAGACTGTACATAATGCGCGCATCAGATTGTTTTTTATCTTTT
TTCTGTTGTGTTTTTCTAGTCTGGGATTCGAATTTTAAATGTAAACATTC
CATTGAAAACGTTCGAAACGATCGTTTTTGCGCGCACATCAATGTCAATC
AAATTACTCGCCAAGATTTCCTTTGCAAACCGGAAAGCGGTTGGTAGATC
ATTAAGCAGACCTATACTACCTGTGGTTTTGTAGAGGTCTGCGATTCAGA
CTAGGTTCTCTTTGGGGTTTGTCAGTTTCGAAAAAAGAGGAGAAAAGTTT
CATTTATTCGTCTTTTTTCACATTCGTTCGTTCGTTCATTCATTCTTTCA
TTCATTCATTTATTTTTTTTTTCTCTATTTTTCAATAGAAATTTAACAAA
GATTGGTGGATCGGGCGCGTCGTCAAAGAAGGGCACAACATCGGATTTGT
ACCCAGGTAAAATATCATACAGACACATTTGGCACATCCTTTAATATCTT
GTATTTCGACAGTATTGATTGAAAAATCAATCAAATATCTTCCAGGGTAA
AAATAAGTTTAGATGCGTGGTAAAGGTTACCTTTTTTACTCAAATTTAGA
GTTTTGTCTTGGAAATAGTCATCACCTTGCAAACCTAGTTCTACTATTAA
ATGCTTGTAATATAATGATTGACTTACCGGCTTTCTCTGTTTTGTTTTAG
CCCCGACAAATTGGAAAGCATTCGACAATCAGGTGTATCAGGCAAACTGA
AAATGCGCCAATCTTCGACCAGTAGCAATATGAATCTTCATGATGACCCA
CAAAACCAAAGATCTCCGTGTAAGGATAGCCCAAAGATTATTTTAATGTT
TTGAGGATGTAAAAATGATGAAAAGATATCACTCAAACATTATGCTTTTG
ATCAATGTCCTCCTGATAGCGGCCTTTTCCAAAAAAAGTCTGTTCATTGG
GGTGGAAGATATGTTTTTTTAATGACCTCACTGAACCGATTTTCACCCCT
GGACACTCCACTTTACTCCTAAACTAGCATTAAATTGACCTCCTGAATTT
GAACATGGCAGTTTGCACAACTTCCATAAAGCCTTTAGATGTTCTTATCT
TAATATCTTGGTCATCGAAGCCTTATCTTCTTATATTCATGATATGTACC
ATTGCAAAATCTTCCACGGACCCGACAGCTGATTGGTTGCGAGTGATGTA
AAATAAGTCGATACGTCACTGCACTTGCATATCATGGAGACTTTGTTCTA
TTTATTTATTTATTTATTTATTTTTTCCATTCTTTTATTTCAGTGGGTGA
AGCCGGTGGTAACAACTCATTTGATGACGAAACGGTCAATTCACCAGTTC
GTAACGTCTCCACTGAATCCAATAACACCAATAATAACAACACCACTAAT
TCACTCAACGCTCAAAAAGGCAAAAAAGGAATCTTCAAAAAGGTTGGTCA
TTTTTTTCCCTTTTTGAAAACATTATTTACGAATACAGTTGCCTCTCTCT
CTAATTCGATCTTCGATCGACTAAACTTTTCTTGGAATTAAAAAAAATTT
CGAATTACAGAGAACATTTTACACTATTTTCTAGCTGAGGGGGCCGATGT
TTTAGTTCGAATTCTACTTTTGTGGACTGAAAATTAAACGCACTAAGGGT
ATCTGCCCAAAAGCTTTTTCTTATTAGAACATCCAAAATTTTCGGAGCCT
TCGGACGTTTTTAACTTTTTGAGTTTTAAGCCTAGAATGTTCTTAAATGT
TTTTATTTTCGTGTTCTCTTTTTGTAAGCATTTTTGTGCAATTTCCTGAG
AAATCGGGTGTTTTAGAGTCCTCAAAGCCTTGAAATGTTCTTAACTTGTT
CTTTATATTTTTGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTA
AAAAAACGTGTAATTTGTTTGTTATGCTCAACTTTAGTTCGTTATGTTCA
AACAAAAAGAAAATGTCAAAACTTGAAAGGCGTTTTATTCAGAATTTTGA
AAATAAGATATTGGTTTTGAAAATGCTGTGATTTTTTACTGTTGCGTTTT
TAAAGCAACTTTCTAATGGGAAATTCTTGGTGTCATAAATTTTGGATTTT
CTCTTCGTTTTTCGCCAAATGGAAGGAAAGGTTATTTGGTTGCCATAAAA
CTAAAACTTTGGATGTTATTTTAATGGTAAATGCATTTATTTGTACACTA
TTTTTATAAGAACAATTTTTTAAGAACAATGAGTGACAAAAACGTGGAAG
CATAAGAACAATTTAAGAACATGGTTGAGCCTGGAATCGCTGAATTTAAA
GCTATTTAAGAGTCAAATATTGAAAGTTGGGTATAAGGCCTGTATTGTGT
TGATTTAGACCTAAAATAAGAAAAGGATAAGAACAATATCAGACTCGAAA
TTANAAAGTTGGGTATAAGGCCTGTATTGTGTTGATTTAGACCTAAAATA
AGAAAAGGATAAGAACAATGTCAGACTCGAAATTACAAAAATAATAAGAA
TAGCCAAGCCTCAGCAAAATTTACTAGTATTTGAAATAGGGTTTAGTTTG
TTTCCTCACTGGTTTTCATTATCAATCAAATTTGATACTTATGTGTTTTA
TTATTGGGTACCAATCTTAAGGTGTTATCGCAAATTGGCTAACATTATTT
TTGCTTCATTGTGTTTTAGAACGAACAGTTGCATCCGTATTACGTCATCC
CATCGATGAGACCCATCATTTTCGTGGGACCTTCCCTCAAAGGATACGAA
GTGACAGACATGATGCAAAAAGCACTCTTTGACTATCTCAAACACCGCTT
CTCCGAAAGGTAAAATGGCAAAAATAATAATTTAAACTTTTCCCCTACGC
ATCAAGGTTATTTCCTCCCATTTTGGTATTTGCTTTGAAGGCTTGAATAA
GCGAGATGGGCTGGAGTCGTTTATAATCCGTGTAATAAAGTATTAGGGTG
TTATATGATAATACGATACGATAACTGTTTGGACAATTTGTCCCTACCAT
TATTTTTGCTTATTTTCTACTACGCTTGAATTAGTCGTTTAGCTTGCTAT
ACTACTAGCAAGACCTGCTTTTAACTCCCATTCGAAATGCGTTTACAGTA
GTAGTTCTGCAATTATGTATACCTCCTGTTAAAGTGGTTAAACTTTTTGG
TGGCCTTTAAAATTCTAGTTAAAAGTAATGCAATTTTGTAACTTTGTTTT
TTTCCCTACTGTAAATCCCTTTAAAAAACTTTTTCTCAACCTTCTCTTTG
CATTGTCAATGGTACACGCTTTTTTTTAAAGAATAACTTCTATAAGAATA
TCAGGGTCAGATTTCAGAGTTAGAACAATAGGCCTATTGTTTAGAACGAT
AGAAAAATAAGAATAATGCTCACCCTCAGCCAAAGTACATTATTCTTATA
AAAAAGCGTGTAATTCTCATTGGAGAAAGCATATGAATTCCTATCGATTC
TTCTTTTTCTTTTCTCCAGAATTATTTTTACCAGAGTGAACGCAGACATC
AGTTTAGCAAAGCGTTCCAACTTGAACAACCAAAACAGACAACCAAACTT
CCCAAAGAAATCGAATGGACAAGCTGGACTTGGTAAAATTTTCGAAATCT
CCTTTCTTGTGATTTAAATTTTTCAAGTCGTGCAAGAGCTGCTTTAAACG
TCCTGACTATATATAATGATGGGGAATCTCAACTGAATGGAAACAGACTT
CACGATTCTGTTTTTCATTTATCTGAAATGGTCTGAAACTTAACTATGAA
ATCATAAAACTTCCTTCCTACAATTTATTTGCCCTTCTTGCCTTTGGGGA
GTGTTATTATTATTTTGCATCAATTAAGGCCGTGTTCGTACATAACGGTT
TTGATCCGAAACGAAATAAAGTCATTCTATTGACTAGAAGTGACTTAAAA
TTTGATTCAACCAATAGAATGGCCTCATTTCGTTTCGGAGCGAAATGAAA
CCGTAGCGTGTGAACGTGGTCTTAGCTATAGATTTATAAAGCCCGAAGTG
GCTAGATGTCGTGCTTCGGCTGAAAAGTATGCCGTGGTTAGATAGGAAAT
CCTACCTAGCTAGGTCACGTGACATTACAATAGAATTTCAGCGCTTGACC
AATCATAAGCTTCTCGGGTTCTCGAAAACAATAGCAACAATATTTTTTCC
AATATTCAATTTTTTTGCCTGCGATGGCTTAAAGCACGACATCTAGCCCT
TCGGACTTTATAAATCCATTGTCTTAGCTGAGCGCCTAAAATCACCATCT
TAGATTTCATTAACTTTTTCTTTTACCAGCTGAAGTGCAAGAAGAAGTGA
ACCGTATTTTCGAATTGTGCAGAAGCTCACAATTGGTGGTTCTTGACTGT
GACACCATCAACAATCCTTCACAAGTCATCAAGACGTCTCTCGCTCCCAT
CATTGTCGCCATTAAAATTGCATCACCAAAGGTTTGTTGCGTGTTGCTCT
TGTTTTGCATTGCAAACCCATTACAAACCGCTACTACAGGGTGTCCCAAA
AAAGTCGAGTCGAAACACAACTATGAGTAGAAAGTTTTTGTGTGTATATT
CACAAAATCGTATTTTGAGCTCTCACTCTTTTTTCTTTGTCATTGCGTAA
CAATGGAATAATAAAAGAGCTATTGATTAATACTTTTTTTAAACTAAATT
TGTAATAAGCCTGTACGATGGAGTACGTTCTCATATTTTAGCGATAACAC
ACACAAACTTTAGAAAAGGCTTGTTCAAACTCGATACTTTTTTTCGGGAC
ACCCTGTATAAGATGCCCATCTCTCATTTGTTACTTCGCAAATCCACTAC
GCCTTTCAATCATGCCAGTGTTGGCACGATACGTAAAGAAACAACGCCCT
TTAACGCCCTTAGTATCCAAATAAAGTTAGATGGACATTGAATCGGCGCT
CTGTGTCAGTTGAGATAACACGGCTCAGAGGTAAAACTCTACTTTCTAAC
CCTAAGTTAAGGTATTTAAAAACTACTTGCGGTTTTTAAAATTTTGAAGC
AAAACAGCATGTTCTGCTGTAGGCGCGAAATGAAAATTGGAAAATGAAAA
TCTATTTACTGATGATGTTTTCAGGTCTTGACTCGTTTGATCAAATCAAG
AGGAAAGAATCAAGTCAAACATTTGAACATCCAAATGATCGCTGCTGACA
AACTCAGTCAATGTAACGAGGTTAGTCAAATTTCCTTCCTTAAACCACAT
TTCATGGTCTAAATTCAGCCTGGCTTGAGCCCTGGCAGGATACTGACTTT
AGAATCTGTTAAAAGAGAGAGGTTTTCTCGCTAAAGTTCATACCCGTAAA
TCCGTTTCTCTCGACTGAATGTGTTTTTAAGTTATTGTGTATTTTTTTTC
CGTATTTATGTAGGCCTTAGTCAGAACATCATGCTGAAATGTTTATTTTC
CTACAACAATATATCAGTTATTTTTCAACACAAAATCTGAGGTTATAATA
ATAAAAAGAAATTGAAATTGTCTGGCACTGTTGGATTTTAATAATAAAAA
GAGTTAATTTAAATCTTTCTATTCTGCAGGAAATGTTTGATGTTGTGTTG
GATGAGAACCAATTGGAAGATGCGTGTGAGCATTTAGGAGAATTCTTAGA
GGCTTATTGGAGAGCTGCCGTTCCTGGTGCACAAGAGGGCTTAATTTCTC
AAGAAAACGGTGGTTTTGTTAACCAAGGTGGACCCAACGGGGCCGGTTAT
AACGGCGTCGATCAGTACGGTACTCCGCAACGTAATTTAAGGACAGCTCA
AGTGTGAAGAGCATTTACGTGATGTTGGGAACCGTGAAGATTCTTTTTTT
TGTTATTTACAAGAACAAAAAATAAAAATGAGGAAAATTATTGACGGAGA
GATTTGTTCGTCAAAAATACATCGGATGGACGTCATCGGTAGTTTTGTTT
GAGATTTGGAGGCGAATTTATCGGGCTATGCCGCTGTCTAAATCGACGTT
CAACATCTACGGTTGTTTCGCAAAATTCTGTAAAAGTGACATGAAATGTT
AATACGACAATGAACATTGATTTTGAAAAAGAAGCTTCNCTACTGTTGTT
TCGCAAAATTCTGTAAAAGTGACATGTAATGTTAATACGACAACAAGCAT
TGATTTTGAAAAAGAAGCTCAAAGAGGAAACTTTTGAAGAAACAAACGAA
ATGTTGAGGAAACAGTATCATAAGTGAAAAATCTCAAAACAAAAACACTT
TTAAAGATATATTAAAATTAGAAGACACTTCTTATGCTTGTTGCTGATAA
GAAAAAATAAAATTAAAGATTAAAGAAAATTTTGTAGAGAAATTTATTAC
CATTAAGATATCATGAAATGCTTGCCGATGTGCTTTAGCTTTGATTGACG
AAGAATTTGGCACCGAGATCCCAAGAAAGACGTATTTCCTAAACCAGCCT
AACTCTTGAGTCTGGGAAATATCAATATTGGAGTAATCAACTATCAATTA
AATTCCAGTCTGAGAATTCTTTTTATAAATTTTCGGAAATTTATTTCAAT
AGTGTGATCAAACTAGATATTTACCGGATGTTTTGTGGGAAACAGTTGCT
GATTGGACGAAAGACATTATTTTTTATGATTTATATTTTTTGTTCGAATT
TTATGATTATTATTTAGTATTCAAGTTGTAAATTGTTTATATAATTATTA
CATATATTATATTTCCATTCTTTTTGTTTCAAATTTATATGAAAATTGAG
CTCCACAAGTAGCTTTTGAAAAACGAGTTAAATAAATATGCAATATCAAA
ATTTATTCAATTCAGAAATTTCTCCTGATATATTTTTTCCTTAAAGTTTT
TTGCAATTTTTTGAAAATTCTTTTTTCTCGAATTTTTTTCGATTCATTTC
TTATTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044557XLOC_044557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071751-exon-scaffold_63-1575043694:827947..828145TCONS_00071751-exon-scaffold_63-1575043694:827947..828145Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:822975..823085TCONS_00071751-exon-scaffold_63-1575043694:822975..823085Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:822514..822636TCONS_00071751-exon-scaffold_63-1575043694:822514..822636Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:820740..820807TCONS_00071751-exon-scaffold_63-1575043694:820740..820807Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:820377..820495TCONS_00071751-exon-scaffold_63-1575043694:820377..820495Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:819754..819902TCONS_00071751-exon-scaffold_63-1575043694:819754..819902Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:818387..818526TCONS_00071751-exon-scaffold_63-1575043694:818387..818526Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:817614..817726TCONS_00071751-exon-scaffold_63-1575043694:817614..817726Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:816765..816916TCONS_00071751-exon-scaffold_63-1575043694:816765..816916Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:816026..816121TCONS_00071751-exon-scaffold_63-1575043694:816026..816121Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1575043694:814336..815666TCONS_00071751-exon-scaffold_63-1575043694:814336..815666Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:827947..828145TCONS_00071751-exon-scaffold_63-1510915933:827947..828145Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:822975..823085TCONS_00071751-exon-scaffold_63-1510915933:822975..823085Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:822514..822636TCONS_00071751-exon-scaffold_63-1510915933:822514..822636Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:820740..820807TCONS_00071751-exon-scaffold_63-1510915933:820740..820807Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:820377..820495TCONS_00071751-exon-scaffold_63-1510915933:820377..820495Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:819754..819902TCONS_00071751-exon-scaffold_63-1510915933:819754..819902Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:818387..818526TCONS_00071751-exon-scaffold_63-1510915933:818387..818526Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:817614..817726TCONS_00071751-exon-scaffold_63-1510915933:817614..817726Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:816765..816916TCONS_00071751-exon-scaffold_63-1510915933:816765..816916Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:816026..816121TCONS_00071751-exon-scaffold_63-1510915933:816026..816121Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1510915933:814336..815666TCONS_00071751-exon-scaffold_63-1510915933:814336..815666Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:827947..828145TCONS_00071751-exon-scaffold_63-1491911889:827947..828145Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:822975..823085TCONS_00071751-exon-scaffold_63-1491911889:822975..823085Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:822514..822636TCONS_00071751-exon-scaffold_63-1491911889:822514..822636Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:820740..820807TCONS_00071751-exon-scaffold_63-1491911889:820740..820807Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:820377..820495TCONS_00071751-exon-scaffold_63-1491911889:820377..820495Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:819754..819902TCONS_00071751-exon-scaffold_63-1491911889:819754..819902Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:818387..818526TCONS_00071751-exon-scaffold_63-1491911889:818387..818526Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:817614..817726TCONS_00071751-exon-scaffold_63-1491911889:817614..817726Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:816765..816916TCONS_00071751-exon-scaffold_63-1491911889:816765..816916Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:816026..816121TCONS_00071751-exon-scaffold_63-1491911889:816026..816121Clytia hemisphaericaexon
TCONS_00071751-exon-scaffold_63-1491911889:814336..815666TCONS_00071751-exon-scaffold_63-1491911889:814336..815666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:814336..828145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.512798	0.652398	0.627585	1.22284	0.853673	3.67775	3.86174	1.30349	1.53031	0.944731	2.5473	3.24262	3.82227	4.18562	3.62342	1.19689	1.67489	0	0	2.19962	0	0.285646	0
Blast
[Close]
BLAST of TCONS_00071751 vs. Swiss-Prot (Human)
Match: CACB2 (Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3)

HSP 1 Score: 400.593 bits (1028), Expect = 4.401e-127
Identity = 215/421 (51.07%), Postives = 270/421 (64.13%), Query Frame = 2 
Query:  212 DGRKTSGTSSEYGDGEDLEALRILALEKLQA----ARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNKDWWIGRVVKEGHNIGFVPSPDKLESIR----QSGVSGKL-------------------KMRQSSTSSNMNL---------HDDPQNQRSPLGEAGGNNSFDDETVNSPVRXXXXXXXXXXXXXXXXXXXAQKGKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKHRFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVNRIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIKSRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEAYWRAAVP 1366
            D   +  + S+    ED EA+R  A  + QA    A+T+PVAFAVR N  Y+ + +DD PV GMA+SFE  D LH+K+KFN DWWIGR+VKEG  IGF+PSP KLE++R    Q    GK                      + +  SS +++         +D P N RSP   A         +V SP                    ++++ +   FKK E   PY V+PSMRP++ VGPSLKGYEVTDMMQKALFD+LKHRF  RI  TRV ADISLAKRS LNN ++     ++SN ++ LAEVQ E+ RIFEL R+ QLVVLD DTIN+P+Q+ KTSLAPIIV +KI+SPKVL RLIKSRGK+Q KHLN+QM+AADKL+QC  E+FDV+LDENQLEDACEHL ++LEAYW+A  P
Sbjct:   75 DSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAEENDIPANHRSPKPSAN--------SVTSP--------------------HSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAII-ERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHP 466
The following BLAST results are available for this feature:
BLAST of TCONS_00071751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CACB24.401e-12751.07Voltage-dependent L-type calcium channel subunit b... [more]
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