TCONS_00071750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071750
Unique NameTCONS_00071750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071750 ID=TCONS_00071750|Name=TCONS_00071750|organism=Clytia hemisphaerica|type=transcript|length=2555bp
AATTAATCTGCTCGTCGTTGTGATATGGAAAGAATGGTTAGCTGGAAGAA
ACGGCGTACCTTGTTTCGAAGACAAAATAAATTGTTGAATATTGATACTT
ATTTGGCAGTGGAGAGCAGAGACGATGCATTCTTTCGAAGTCCGTTTTTC
ATGGGTGACGAATTCGATGGACGTAAGACGTCGGGAACATCATCCGAATA
CGGTGACGGCGAAGATTTGGAAGCACTCCGTATTTTAGCTTTGGAAAAAC
TTCAAGCTGCAAGAACACGACCGGTAGCATTTGCGGTACGAGCGAACTAC
GGATACAACGGCTCAGAAGATGATGATTCGCCGGTACACGGGATGGCCGT
CTCTTTCGAAAAAGATGATTGTCTTCATATCAAAGACaaatttaacAAAG
ATTGGTGGATCGGGCGCGTCGTCAAAGAAGGGCACAACATCGGATTTGTA
CCCAGCCCCGACAAATTGGAAAGCATTCGACAATCAGGTGTATCAGGCAA
ACTGAAAATGCGCCAATCTTCGACCAGTAGCAATATGAATCTTCATGATG
ACCCACAAAACCAAAGATCTCCGTTGGGTGAAGCCGGTGGTAACAACTCA
TTTGATGACGAAACGGTCAATTCACCAGTTCGTAACGTCTCCACTGAATC
CAATAACACCAATAATAACAACACCACTAATTCACTCAACGctcaaaaag
gcaaaaaaggaatcttcaaaaagAACGAACAGTTGCATCCGTATTACGTC
ATCCCATCGATGAGACCCATCATTTTCGTGGGACCTTCCCTCAAAGGATA
CGAAGTGACAGACATGATGCAAAAAGCACTCTTTGACTATCTCAAACACC
GCTTCTCCGAAAgAATTATTTTTACCAGAGTGAACGCAGACATCAGTTTA
GCAAAGCGTTCCAACTTGAACAACCAAAACAGACAACCAAACTTCCCAAA
GAAATCGAATGGACAAGCTGGACTTgCTGAAGTGCAAGAAGAAGTGAACC
GTATTTTCGAATTGTGCAGAAGCTCACAATTGGTGGTTCTTGACTGTGAC
ACCATCAACAATCCTTCACAAGTCATCAAGACGTCTCTCGCTCCCATCAT
TGTCGCCATTAAAATTGCATCACCAAAGGTCTTGACTCGTTTGATCAAAT
CAAGAGGAAAGAATCAAGTCAAACATTTGAACATCCAAATGATCGCTGCT
GACAAACTCAGTCAATGTAACGAGGAAATGTTTGATGTTGTGTTGGATGA
GAACCAATTGGAAGATGCGTGTGAGCATTTAGGAGAATTCTTAGAGGCTT
ATTGGAGAGCTGCCGTTCCTGGTGCACAAGAGGGCTTAATTTCTCAAGAA
AACGGTGGTTTTGTTAACCAAGGTGGACCCAACGGGGCCGGTTATAACGG
CGTCGATCAGTACGGTACTCCGCAACGTAATTTAAGGACAGCTCAAGTGT
GAAGAGCATTTACGTGATGTTGGGAACCGTGaagattcttttttttgtta
tttacaagaacaaaaaataaaaatgaggaaaattatTGACGGAGAGATTT
GTTCGTCAAAAATACATCGGATGGACGTCATCGGTAGTTTTGTTTGAGAT
TTGGAGGCGAATTTATCGGGCTATGCCGCTGTCTAAATCGACGTTCAACA
TCTACGGTTGTTTCGCAAAATTCTGTAAAAGTGACATGAAATGTTAATAC
GACAATGAacattgattttgaaaaagaagctTCNCTACTGTTGTTTCGCA
AAATTCTGTAAAAGTGACATGTAATGTTAATACGACAACAAGcattgatt
ttgaaaaagaagctCAAAGAGGAAACTTTTGAAGAAACAAACGAAATGTT
GAGGAAACAGTATCATAagtgaaaaatctcaaaacaaaaacacttttaaa
gATATATTAAAATTAGAAGACACTTCTTATGCTTGTTGctgataagaaaa
aataaaattaaagattaaagaaaattttgtagAGAAATTTATTACCATTA
AGATATCATGAAATGCTTGCCGATGTGCTTTAGCTTTGATTGACGAAGAA
TTTGGCACCGAGATCCCAAGAAAGACGTATTTCCTAAACCAGCCTAACTC
TTGAGTCTGGGAAATATCAATATTGGAGTAATCAACTATCAATTAAATTC
CAGTCTGAGaattctttttataaattttcgGAAATTTATTTCAATAGTGT
GATCAAACTAGATATTTACCGGATGTTTTGTGGGAAACAGTTGCTGATTG
GACGAAAGAcattattttttatgatttatattttttgttcgaattttaTG
ATTATTATTTAGTATTCAAGTTGTAAATTGTTTATATAATTATTACATAT
ATTATATTTCcattctttttgtttcaaatttatatGAAAATTGAGCTCCA
CAAGTAGCTTTTGAAAAACGAGTTAAATAAATATGcaatatcaaaattta
ttcaattcAGAAATTTCTCCTGATATATTTTTTCCTtaaagttttttgca
attttttgaaaattcttttttctcgaatttttttcgattcatttcttatt
ttcat
Run BLAST on NCBI

transcript from alignment at scaffold_63:814336..824927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071750 ID=TCONS_00071750|Name=TCONS_00071750|organism=Clytia hemisphaerica|type=transcript|length=10592bp|location=Sequence derived from alignment at scaffold_63:814336..824927- (Clytia hemisphaerica)
AATTAATCTGCTCGTCGTTGTGATATGGAAAGAATGGTTAGCTGGAAGAA
ACGGCGTACCTTGTTTCGAAGACAAAATAAATTGTTGAATATTGATACTT
ATTTGGCAGTGGAGAGCAGAGACGATGCATTCTTTCGAAGTCCGTTTTTC
ATGGTAATGTGAAAAACTCTAAATCATTGCATTTTTAATTGGTTTTTAAT
AGCAAGAGTTTGGAAATCGTTTACTTATTCGCCCTAGTTTGAAAAAGGAT
ACGAACTAAGTAACTTATCAGTGGGGGTCTGGGTTTTAGTTACTGTGGGA
AAAATTTCGTCACCCAGAGACATTTTTTTATTTTTCCTTGGCCAAAATTT
CGAATTCAAATGTTCTTAAAATTCTGTTCAAATGTTCTTATAAGTATAAG
GAAACTATCCACCGGCAATTTACGAATTAAGGCAAGTCTTCATTGTCATA
AACTACTTAAGTCGCTAGTAATAAGTTTCGTTGTTTCGAAATGTTGATTT
TATTAGATCTATTAAAAACTTTCCCCTTGTTTGTGTCTCAGACACACCAT
CATATATTATGCAATATCTCTAAACTAAAGTAAACTATCTGTATAACTCT
AACACGGAAAGTCTTTCCATAAGCCTCTAATAAGGTAAGTAAAGTAAGTA
AACCCAGCTCCATCAGTAGTTGGTCTAAAAACAGATTTTAAGAATCAGGA
TTTTTAATCAAACGAAGCGTTACTACAAAGATGACAACATTTGAACTGGT
TTTGTTAATTTGGGCATTTCAAAGTCTTATCATTGCATGTATGTGTCTGA
ATTTCAAGCCGGTTTGGATTGGGAGACTGGGCTCTAAAGTTCACCATCAG
GAACTTATGAATTAGTTTTTGGTTGATAAATTTCAATCATGAAGATTCTT
GATTGACATTTGTTTTTTTATCTCCCTTTAGCTTGAGACCCTTGAGGTTT
TTTATTTGTGAGTTTTGTGTGAATAAAAATTATTGGAAAATATCTCAAAA
TATTTGTTTTCATTTTCAAGAAAAAAAATTATTTTCAATTTTTATTATTT
TTCTTCATCTCTCGAGATAATATTTTGTTTAAACAACATAAGAAAATTTT
CAAAATCATGATTTTTTCCACAATTATTTCTTTCTTCTTTTGACCTCACA
AGTTTAGTTAAATGTTTGACACCTTCATGTAAATCTAGATGCAATACCCC
CGGGAAATTATCATTCGTTCCTTTTGGTTTAACCTTTTTAAAAATATGTA
CCGGGGGCTCAAAATACATAGAATAACACGGGGAGGGGATATCTTCCAAG
GCTTTTCAATTTAAATTGTTACTNTTACCGGGGGCTCAAAATACATAGAA
TAACACGGGGAGGGGATATCTTCCAAGGCTTTTCAATTTAAATTGTTACT
GGTTATTTCGCCTGAACTATGGAATGCTGCGTTTGGAGCGAAAAAGTAAA
ATCTATTTCTTGATGATCTGAGAACCTTGGGATTAAATGAATCTCATTTC
AAAATCTGTTTAATATCAAGCAAACTAGACGGAGTTTTGGGAAGGCGAGG
CCAATCTCATTAATAGTCTCAACCAATGACTAAACCAACCCTATTATATA
TTAAACATTAATCAAGTTGTTTCTTGCGTGAAACTTTGCTTTTTTATACT
GTATGGACAAAATAAAATATATTTAGATATCCTTTGTAAGTTCAAATATT
AAATCATCTGACTGTGTCCTTATCAACCAATTTTTGGTTATAAAGTATGT
TAGCCGATAACGATCCGTAATAATTCAGTATAACTACCCAAGCTCCACGA
AAACGACATCGAATTAACCACGTCTGATTTTCTCTTCCGTAGGGTGACGA
ATTCGATGGACGTAAGACGTCGGGAACATCATCCGAATACGGTGACGGCG
AAGATTTGGAAGCACTCCGTATTTTAGCTTTGGAAAAACTTCAAGCTGCA
AGAGTGAGTTCGAAATTTATTCCTAAAATATAGATAGTATCTAGTTATCA
GGCAAATTTGAATCATCGACTAAAGTCCCTTTTTGAGCCATAATAAAGCT
GCCAAAGCTTTTGAAACAATTGTCATCTTAGTTGACAAAATCTTGTTGTT
CTTTAGGCCTTAAAAATGGTGAAATAACTGTCAAATTGTCTGTCAACCCT
TACTCCACAGTTGAATTGACGTCAAATGACTCCATTTGACCCTGGTAGGC
TTGAACCCCCTTTTAGCACTATGTAACGCAATCAGGTTGATAGGTTTTTT
CCTTATGATTTTATTATATTGTTATCCCTATCCGTATACAGACACGACCG
GTAGCATTTGCGGTACGAGCGAACTACGGATACAACGGCTCAGAAGATGA
TGATTCGCCGGTACACGGGATGGCCGTCTCTTTCGAAAAAGATGATTGTC
TTCATATCAAAGACGTAAGTCAAATCATGCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGACTGTCTATTTTTCTGTATATCTATCTCAGCAGT
CTCAACAGCGTTAAAAAAACCTTCTTCTGTCTCAGATGAATTTCCGTCTA
AGTGAAGTATATATAAATAGGTTTTCCGTCTGAAAATTCTGCATAATTCA
CCCAAATTTCAAGAATATGTGCTAATTTGCGTGAAATCCATTTTCCGTCT
TAGACCGAAAACTTTGCTTCGACCACTAATTTTCTAAAATGACCCGATCA
GGGTTCTCTTTAGGCTGCTGGCATCCACTAACGGATTCGTGCTCCTTATA
GAGGATGCTTAATAAGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCACCAAATCATAGATTGGAAAATATATTTGGATTTTGAAAAAAAAGT
AGGCGGAAGGAAGTTTGCTTGTTTTTCTTCCTCCTTTCTTGTTTAATGTG
GAGGTTTTGTAAAAGATGAGAAATTATATTTATTGAATTTAAGTGCCCTG
ATGTATCTTTTGTGTGCACCAACAAAATTTTGCTTCATAAAACTACATTT
TGATGCTTTAATTTGGACTTGCATGAGTGTATAATTTCTTACCACACTGG
ATTCGTTGATCACTTTGGCTCCAGATAATTGTTTTGTCAGTTCTACAGAT
ATGTTGCAGATTATTTCAAGGTATTCTAGTTATGTATATACAGTACATTT
TGGGGGTCATATTGAATATTTCTGACATTACTTCTTTATGATTCTACAAA
ACACAAAAGGGAATGTTGTTGTTCCTTCAACAAGGGCCCTTAAATGTTAA
AACAAACAAAGAACTTTTCTTCAGCTTTGGCATTTCACTGTTTAATACTG
TGTGGCCTTTGTATCTTTTCAGGTACTTAGCTCCAATTCTTTGAAGAGAT
TGGAGTGTTTCTGGTTGTTTTCTTTCACTTTTGTGTTCATATTTGTATTT
TTTGAGCTTCGACCGAAGAGCTGATGGAAAAGTTTTGATAAATTTACAGA
CCAGATATCTTATAAAAGCAAAAGTCAAAAGTAAATCTACAGACTGTACA
TAATGCGCGCATCAGATTGTTTTTTATCTTTTTTCTGTTGTGTTTTTCTA
GTCTGGGATTCGAATTTTAAATGTAAACATTCCATTGAAAACGTTCGAAA
CGATCGTTTTTGCGCGCACATCAATGTCAATCAAATTACTCGCCAAGATT
TCCTTTGCAAACCGGAAAGCGGTTGGTAGATCATTAAGCAGACCTATACT
ACCTGTGGTTTTGTAGAGGTCTGCGATTCAGACTAGGTTCTCTTTGGGGT
TTGTCAGTTTCGAAAAAAGAGGAGAAAAGTTTCATTTATTCGTCTTTTTT
CACATTCGTTCGTTCGTTCATTCATTCTTTCATTCATTCATTTATTTTTT
TTTTCTCTATTTTTCAATAGAAATTTAACAAAGATTGGTGGATCGGGCGC
GTCGTCAAAGAAGGGCACAACATCGGATTTGTACCCAGGTAAAATATCAT
ACAGACACATTTGGCACATCCTTTAATATCTTGTATTTCGACAGTATTGA
TTGAAAAATCAATCAAATATCTTCCAGGGTAAAAATAAGTTTAGATGCGT
GGTAAAGGTTACCTTTTTTACTCAAATTTAGAGTTTTGTCTTGGAAATAG
TCATCACCTTGCAAACCTAGTTCTACTATTAAATGCTTGTAATATAATGA
TTGACTTACCGGCTTTCTCTGTTTTGTTTTAGCCCCGACAAATTGGAAAG
CATTCGACAATCAGGTGTATCAGGCAAACTGAAAATGCGCCAATCTTCGA
CCAGTAGCAATATGAATCTTCATGATGACCCACAAAACCAAAGATCTCCG
TGTAAGGATAGCCCAAAGATTATTTTAATGTTTTGAGGATGTAAAAATGA
TGAAAAGATATCACTCAAACATTATGCTTTTGATCAATGTCCTCCTGATA
GCGGCCTTTTCCAAAAAAAGTCTGTTCATTGGGGTGGAAGATATGTTTTT
TTAATGACCTCACTGAACCGATTTTCACCCCTGGACACTCCACTTTACTC
CTAAACTAGCATTAAATTGACCTCCTGAATTTGAACATGGCAGTTTGCAC
AACTTCCATAAAGCCTTTAGATGTTCTTATCTTAATATCTTGGTCATCGA
AGCCTTATCTTCTTATATTCATGATATGTACCATTGCAAAATCTTCCACG
GACCCGACAGCTGATTGGTTGCGAGTGATGTAAAATAAGTCGATACGTCA
CTGCACTTGCATATCATGGAGACTTTGTTCTATTTATTTATTTATTTATT
TATTTTTTCCATTCTTTTATTTCAGTGGGTGAAGCCGGTGGTAACAACTC
ATTTGATGACGAAACGGTCAATTCACCAGTTCGTAACGTCTCCACTGAAT
CCAATAACACCAATAATAACAACACCACTAATTCACTCAACGCTCAAAAA
GGCAAAAAAGGAATCTTCAAAAAGGTTGGTCATTTTTTTCCCTTTTTGAA
AACATTATTTACGAATACAGTTGCCTCTCTCTCTAATTCGATCTTCGATC
GACTAAACTTTTCTTGGAATTAAAAAAAATTTCGAATTACAGAGAACATT
TTACACTATTTTCTAGCTGAGGGGGCCGATGTTTTAGTTCGAATTCTACT
TTTGTGGACTGAAAATTAAACGCACTAAGGGTATCTGCCCAAAAGCTTTT
TCTTATTAGAACATCCAAAATTTTCGGAGCCTTCGGACGTTTTTAACTTT
TTGAGTTTTAAGCCTAGAATGTTCTTAAATGTTTTTATTTTCGTGTTCTC
TTTTTGTAAGCATTTTTGTGCAATTTCCTGAGAAATCGGGTGTTTTAGAG
TCCTCAAAGCCTTGAAATGTTCTTAACTTGTTCTTTATATTTTTGCCATC
GAAGCCTTATGTTCTTATATAGTTTGTTCTTAAAAAAACGTGTAATTTGT
TTGTTATGCTCAACTTTAGTTCGTTATGTTCAAACAAAAAGAAAATGTCA
AAACTTGAAAGGCGTTTTATTCAGAATTTTGAAAATAAGATATTGGTTTT
GAAAATGCTGTGATTTTTTACTGTTGCGTTTTTAAAGCAACTTTCTAATG
GGAAATTCTTGGTGTCATAAATTTTGGATTTTCTCTTCGTTTTTCGCCAA
ATGGAAGGAAAGGTTATTTGGTTGCCATAAAACTAAAACTTTGGATGTTA
TTTTAATGGTAAATGCATTTATTTGTACACTATTTTTATAAGAACAATTT
TTTAAGAACAATGAGTGACAAAAACGTGGAAGCATAAGAACAATTTAAGA
ACATGGTTGAGCCTGGAATCGCTGAATTTAAAGCTATTTAAGAGTCAAAT
ATTGAAAGTTGGGTATAAGGCCTGTATTGTGTTGATTTAGACCTAAAATA
AGAAAAGGATAAGAACAATATCAGACTCGAAATTANAAAGTTGGGTATAA
GGCCTGTATTGTGTTGATTTAGACCTAAAATAAGAAAAGGATAAGAACAA
TGTCAGACTCGAAATTACAAAAATAATAAGAATAGCCAAGCCTCAGCAAA
ATTTACTAGTATTTGAAATAGGGTTTAGTTTGTTTCCTCACTGGTTTTCA
TTATCAATCAAATTTGATACTTATGTGTTTTATTATTGGGTACCAATCTT
AAGGTGTTATCGCAAATTGGCTAACATTATTTTTGCTTCATTGTGTTTTA
GAACGAACAGTTGCATCCGTATTACGTCATCCCATCGATGAGACCCATCA
TTTTCGTGGGACCTTCCCTCAAAGGATACGAAGTGACAGACATGATGCAA
AAAGCACTCTTTGACTATCTCAAACACCGCTTCTCCGAAAGGTAAAATGG
CAAAAATAATAATTTAAACTTTTCCCCTACGCATCAAGGTTATTTCCTCC
CATTTTGGTATTTGCTTTGAAGGCTTGAATAAGCGAGATGGGCTGGAGTC
GTTTATAATCCGTGTAATAAAGTATTAGGGTGTTATATGATAATACGATA
CGATAACTGTTTGGACAATTTGTCCCTACCATTATTTTTGCTTATTTTCT
ACTACGCTTGAATTAGTCGTTTAGCTTGCTATACTACTAGCAAGACCTGC
TTTTAACTCCCATTCGAAATGCGTTTACAGTAGTAGTTCTGCAATTATGT
ATACCTCCTGTTAAAGTGGTTAAACTTTTTGGTGGCCTTTAAAATTCTAG
TTAAAAGTAATGCAATTTTGTAACTTTGTTTTTTTCCCTACTGTAAATCC
CTTTAAAAAACTTTTTCTCAACCTTCTCTTTGCATTGTCAATGGTACACG
CTTTTTTTTAAAGAATAACTTCTATAAGAATATCAGGGTCAGATTTCAGA
GTTAGAACAATAGGCCTATTGTTTAGAACGATAGAAAAATAAGAATAATG
CTCACCCTCAGCCAAAGTACATTATTCTTATAAAAAAGCGTGTAATTCTC
ATTGGAGAAAGCATATGAATTCCTATCGATTCTTCTTTTTCTTTTCTCCA
GAATTATTTTTACCAGAGTGAACGCAGACATCAGTTTAGCAAAGCGTTCC
AACTTGAACAACCAAAACAGACAACCAAACTTCCCAAAGAAATCGAATGG
ACAAGCTGGACTTGGTAAAATTTTCGAAATCTCCTTTCTTGTGATTTAAA
TTTTTCAAGTCGTGCAAGAGCTGCTTTAAACGTCCTGACTATATATAATG
ATGGGGAATCTCAACTGAATGGAAACAGACTTCACGATTCTGTTTTTCAT
TTATCTGAAATGGTCTGAAACTTAACTATGAAATCATAAAACTTCCTTCC
TACAATTTATTTGCCCTTCTTGCCTTTGGGGAGTGTTATTATTATTTTGC
ATCAATTAAGGCCGTGTTCGTACATAACGGTTTTGATCCGAAACGAAATA
AAGTCATTCTATTGACTAGAAGTGACTTAAAATTTGATTCAACCAATAGA
ATGGCCTCATTTCGTTTCGGAGCGAAATGAAACCGTAGCGTGTGAACGTG
GTCTTAGCTATAGATTTATAAAGCCCGAAGTGGCTAGATGTCGTGCTTCG
GCTGAAAAGTATGCCGTGGTTAGATAGGAAATCCTACCTAGCTAGGTCAC
GTGACATTACAATAGAATTTCAGCGCTTGACCAATCATAAGCTTCTCGGG
TTCTCGAAAACAATAGCAACAATATTTTTTCCAATATTCAATTTTTTTGC
CTGCGATGGCTTAAAGCACGACATCTAGCCCTTCGGACTTTATAAATCCA
TTGTCTTAGCTGAGCGCCTAAAATCACCATCTTAGATTTCATTAACTTTT
TCTTTTACCAGCTGAAGTGCAAGAAGAAGTGAACCGTATTTTCGAATTGT
GCAGAAGCTCACAATTGGTGGTTCTTGACTGTGACACCATCAACAATCCT
TCACAAGTCATCAAGACGTCTCTCGCTCCCATCATTGTCGCCATTAAAAT
TGCATCACCAAAGGTTTGTTGCGTGTTGCTCTTGTTTTGCATTGCAAACC
CATTACAAACCGCTACTACAGGGTGTCCCAAAAAAGTCGAGTCGAAACAC
AACTATGAGTAGAAAGTTTTTGTGTGTATATTCACAAAATCGTATTTTGA
GCTCTCACTCTTTTTTCTTTGTCATTGCGTAACAATGGAATAATAAAAGA
GCTATTGATTAATACTTTTTTTAAACTAAATTTGTAATAAGCCTGTACGA
TGGAGTACGTTCTCATATTTTAGCGATAACACACACAAACTTTAGAAAAG
GCTTGTTCAAACTCGATACTTTTTTTCGGGACACCCTGTATAAGATGCCC
ATCTCTCATTTGTTACTTCGCAAATCCACTACGCCTTTCAATCATGCCAG
TGTTGGCACGATACGTAAAGAAACAACGCCCTTTAACGCCCTTAGTATCC
AAATAAAGTTAGATGGACATTGAATCGGCGCTCTGTGTCAGTTGAGATAA
CACGGCTCAGAGGTAAAACTCTACTTTCTAACCCTAAGTTAAGGTATTTA
AAAACTACTTGCGGTTTTTAAAATTTTGAAGCAAAACAGCATGTTCTGCT
GTAGGCGCGAAATGAAAATTGGAAAATGAAAATCTATTTACTGATGATGT
TTTCAGGTCTTGACTCGTTTGATCAAATCAAGAGGAAAGAATCAAGTCAA
ACATTTGAACATCCAAATGATCGCTGCTGACAAACTCAGTCAATGTAACG
AGGTTAGTCAAATTTCCTTCCTTAAACCACATTTCATGGTCTAAATTCAG
CCTGGCTTGAGCCCTGGCAGGATACTGACTTTAGAATCTGTTAAAAGAGA
GAGGTTTTCTCGCTAAAGTTCATACCCGTAAATCCGTTTCTCTCGACTGA
ATGTGTTTTTAAGTTATTGTGTATTTTTTTTCCGTATTTATGTAGGCCTT
AGTCAGAACATCATGCTGAAATGTTTATTTTCCTACAACAATATATCAGT
TATTTTTCAACACAAAATCTGAGGTTATAATAATAAAAAGAAATTGAAAT
TGTCTGGCACTGTTGGATTTTAATAATAAAAAGAGTTAATTTAAATCTTT
CTATTCTGCAGGAAATGTTTGATGTTGTGTTGGATGAGAACCAATTGGAA
GATGCGTGTGAGCATTTAGGAGAATTCTTAGAGGCTTATTGGAGAGCTGC
CGTTCCTGGTGCACAAGAGGGCTTAATTTCTCAAGAAAACGGTGGTTTTG
TTAACCAAGGTGGACCCAACGGGGCCGGTTATAACGGCGTCGATCAGTAC
GGTACTCCGCAACGTAATTTAAGGACAGCTCAAGTGTGAAGAGCATTTAC
GTGATGTTGGGAACCGTGAAGATTCTTTTTTTTGTTATTTACAAGAACAA
AAAATAAAAATGAGGAAAATTATTGACGGAGAGATTTGTTCGTCAAAAAT
ACATCGGATGGACGTCATCGGTAGTTTTGTTTGAGATTTGGAGGCGAATT
TATCGGGCTATGCCGCTGTCTAAATCGACGTTCAACATCTACGGTTGTTT
CGCAAAATTCTGTAAAAGTGACATGAAATGTTAATACGACAATGAACATT
GATTTTGAAAAAGAAGCTTCNCTACTGTTGTTTCGCAAAATTCTGTAAAA
GTGACATGTAATGTTAATACGACAACAAGCATTGATTTTGAAAAAGAAGC
TCAAAGAGGAAACTTTTGAAGAAACAAACGAAATGTTGAGGAAACAGTAT
CATAAGTGAAAAATCTCAAAACAAAAACACTTTTAAAGATATATTAAAAT
TAGAAGACACTTCTTATGCTTGTTGCTGATAAGAAAAAATAAAATTAAAG
ATTAAAGAAAATTTTGTAGAGAAATTTATTACCATTAAGATATCATGAAA
TGCTTGCCGATGTGCTTTAGCTTTGATTGACGAAGAATTTGGCACCGAGA
TCCCAAGAAAGACGTATTTCCTAAACCAGCCTAACTCTTGAGTCTGGGAA
ATATCAATATTGGAGTAATCAACTATCAATTAAATTCCAGTCTGAGAATT
CTTTTTATAAATTTTCGGAAATTTATTTCAATAGTGTGATCAAACTAGAT
ATTTACCGGATGTTTTGTGGGAAACAGTTGCTGATTGGACGAAAGACATT
ATTTTTTATGATTTATATTTTTTGTTCGAATTTTATGATTATTATTTAGT
ATTCAAGTTGTAAATTGTTTATATAATTATTACATATATTATATTTCCAT
TCTTTTTGTTTCAAATTTATATGAAAATTGAGCTCCACAAGTAGCTTTTG
AAAAACGAGTTAAATAAATATGCAATATCAAAATTTATTCAATTCAGAAA
TTTCTCCTGATATATTTTTTCCTTAAAGTTTTTTGCAATTTTTTGAAAAT
TCTTTTTTCTCGAATTTTTTTCGATTCATTTCTTATTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044557XLOC_044557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071750-exon-scaffold_63-1575043694:824775..824927TCONS_00071750-exon-scaffold_63-1575043694:824775..824927Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:822975..823085TCONS_00071750-exon-scaffold_63-1575043694:822975..823085Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:822514..822636TCONS_00071750-exon-scaffold_63-1575043694:822514..822636Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:820740..820807TCONS_00071750-exon-scaffold_63-1575043694:820740..820807Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:820377..820495TCONS_00071750-exon-scaffold_63-1575043694:820377..820495Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:819754..819902TCONS_00071750-exon-scaffold_63-1575043694:819754..819902Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:818387..818526TCONS_00071750-exon-scaffold_63-1575043694:818387..818526Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:817614..817726TCONS_00071750-exon-scaffold_63-1575043694:817614..817726Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:816765..816916TCONS_00071750-exon-scaffold_63-1575043694:816765..816916Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:816026..816121TCONS_00071750-exon-scaffold_63-1575043694:816026..816121Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1575043694:814336..815666TCONS_00071750-exon-scaffold_63-1575043694:814336..815666Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:824775..824927TCONS_00071750-exon-scaffold_63-1510915933:824775..824927Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:822975..823085TCONS_00071750-exon-scaffold_63-1510915933:822975..823085Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:822514..822636TCONS_00071750-exon-scaffold_63-1510915933:822514..822636Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:820740..820807TCONS_00071750-exon-scaffold_63-1510915933:820740..820807Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:820377..820495TCONS_00071750-exon-scaffold_63-1510915933:820377..820495Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:819754..819902TCONS_00071750-exon-scaffold_63-1510915933:819754..819902Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:818387..818526TCONS_00071750-exon-scaffold_63-1510915933:818387..818526Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:817614..817726TCONS_00071750-exon-scaffold_63-1510915933:817614..817726Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:816765..816916TCONS_00071750-exon-scaffold_63-1510915933:816765..816916Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:816026..816121TCONS_00071750-exon-scaffold_63-1510915933:816026..816121Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1510915933:814336..815666TCONS_00071750-exon-scaffold_63-1510915933:814336..815666Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:824775..824927TCONS_00071750-exon-scaffold_63-1491911889:824775..824927Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:822975..823085TCONS_00071750-exon-scaffold_63-1491911889:822975..823085Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:822514..822636TCONS_00071750-exon-scaffold_63-1491911889:822514..822636Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:820740..820807TCONS_00071750-exon-scaffold_63-1491911889:820740..820807Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:820377..820495TCONS_00071750-exon-scaffold_63-1491911889:820377..820495Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:819754..819902TCONS_00071750-exon-scaffold_63-1491911889:819754..819902Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:818387..818526TCONS_00071750-exon-scaffold_63-1491911889:818387..818526Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:817614..817726TCONS_00071750-exon-scaffold_63-1491911889:817614..817726Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:816765..816916TCONS_00071750-exon-scaffold_63-1491911889:816765..816916Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:816026..816121TCONS_00071750-exon-scaffold_63-1491911889:816026..816121Clytia hemisphaericaexon
TCONS_00071750-exon-scaffold_63-1491911889:814336..815666TCONS_00071750-exon-scaffold_63-1491911889:814336..815666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:814336..824927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.16521e-06	9.58039e-07	5.37407	5.73072	1.23944	1.828	1.00098	1.62818	3.01443	1.40649	0	0.982101	2.81633	5.19213	3.4603	8.19997	2.78157	2.77774	1.20323	3.12692	1.84325	0.878615	6.6861	5.6035	0.830719	0.804768
Blast
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BLAST of TCONS_00071750 vs. Swiss-Prot (Human)
Match: CACB2 (Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3)

HSP 1 Score: 401.364 bits (1030), Expect = 1.768e-127
Identity = 216/428 (50.47%), Postives = 271/428 (63.32%), Query Frame = 1 
Query:  145 FFMGDEFDGRKTSGTSSEYGDGEDLEALRILALEKLQA----ARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNKDWWIGRVVKEGHNIGFVPSPDKLESIR----QSGVSGKL-------------------KMRQSSTSSNMNL---------HDDPQNQRSPLGEAGGNNSFDDETVNSPVRXXXXXXXXXXXXXXXXXXXAQKGKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKHRFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVNRIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIKSRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEAYWRAAVP 1320
            F      D   +  + S+    ED EA+R  A  + QA    A+T+PVAFAVR N  Y+ + +DD PV GMA+SFE  D LH+K+KFN DWWIGR+VKEG  IGF+PSP KLE++R    Q    GK                      + +  SS +++         +D P N RSP   A         +V SP                    ++++ +   FKK E   PY V+PSMRP++ VGPSLKGYEVTDMMQKALFD+LKHRF  RI  TRV ADISLAKRS LNN ++     ++SN ++ LAEVQ E+ RIFEL R+ QLVVLD DTIN+P+Q+ KTSLAPIIV +KI+SPKVL RLIKSRGK+Q KHLN+QM+AADKL+QC  E+FDV+LDENQLEDACEHL ++LEAYW+A  P
Sbjct:   68 FVRQGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAEENDIPANHRSPKPSAN--------SVTSP--------------------HSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAII-ERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHP 466
The following BLAST results are available for this feature:
BLAST of TCONS_00071750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CACB21.768e-12750.47Voltage-dependent L-type calcium channel subunit b... [more]
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