TCONS_00071744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071744
Unique NameTCONS_00071744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071744 ID=TCONS_00071744|Name=TCONS_00071744|organism=Clytia hemisphaerica|type=transcript|length=1283bp
TTTCGACTTGACAGCAGCAAGTCATGGAAATTGATACGGAGAAAAACGCA
AAAATGGATGTGAAGAAAACCGCATTGGACCGACTCTCGATTACCACCCC
TGAAGTCTTTGAGTATGTGCCTAGAGCTAGCTCTAAGAACAACAGTCGtt
catcaaaaaaatcttcCACATTTAATTTCGAGAAGGCATACCATGAGATG
CTAGAGaaattgAAGTTCAAGGAGAACGAAGTTGCAACGTTAAAACAACA
TATGCAATTAATCTGTTCGGAACGGGACGATTTGAAAAAGGATGCAGAGT
TACTGGTCGCTGTTAACAACCAATCTTTGCACCGTTTGGGTGCAATAACT
GAAGAACGACCTGAAGCATCCAAAATAGATGAGCTTCTAAAACGCATCCT
TAAGAGCGATCAATTGATCGACGCACTCGCTGTAGAGCGAACGGAAAACG
CGGAATTGATTCGCCACGTGCATGCTGAAAACGGTATCTGCCGCAACACC
ATCCAGCTACTTAAGGAGGATATTAAAGAGAAGGAAAAAGCTTTAGAAGC
NGCTCGCTGTAGAGCGAACGGAAAATGCGGAATTGATTCGCCACGTGCAT
GCTGAAAACGGTATCTGCCGCAACACCATCCAGCTACTTAAGGAGGATAT
TAAAGAGAAGGAAAAAGCTTTAGAAgctaaacaaaaagatttagAAGCTA
AAGAAATGGTCATCGAGACCAAAGATGCttccttgaaaacaaaagataaG
GATCTGGACACATTTACCAAACAAAGTCAATTAGCAATCAAAGCTAAAGA
TGAGATTGTGAAGGAGCTGGAGAAAAAGATTCAAGAACTTATTGGAAGAT
TGATAATTGAGATAAAGAAATCTTCTGCTTTGGAATCTTCCATTAAAGAT
AAGGACAAGACAATTCAGAATTACAAAACAAAATCGACTGAGCAAGCTCA
GTTAATTGAGCAACTGAACAACGACATTGACCAACGGAGAAACAGAATCA
AGGAGTTGACATTGTTGAAAATGGAGCATTATGAAAAGCTAGACGAAAAC
GAGGCCACCATCGAACAGCTTTGGGCTGAATTACAATACATGAAGAATAA
TACCTTCAAGAAGAAATGTAAAAAACTATTTAGCTGCAGATCCTCTCGCT
CCCAGCCGGCAGAACGCGAGCGACCTGTTGCTAGGCAACAAAAACAAGAT
GGCACACTCAGACATGAGGAGGATACGAAGGCTTCATCTTCCAGACAAGC
TCCACTAATGGACGCTAAATTAAACGACATAGG
Run BLAST on NCBI

protein sequence of TCONS_00071744-protein

>TCONS_00071744-protein ID=TCONS_00071744-protein|Name=TCONS_00071744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MEIDTEKNAKMDVKKTALDRLSITTPEVFEYVPRASSKNNSRSSKKSSTF
NFEKAYHEMLEKLKFKENEVATLKQHMQLICSERDDLKKDAELLVAVNNQ
SLHRLGAITEERPEASKIDELLKRILKSDQLIDALAVERTENAELIRHVH
AENGICRNTIQLLKEDIKEKEKALEXARCRANGKCGIDSPRAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:689687..693226-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071744 ID=TCONS_00071744|Name=TCONS_00071744|organism=Clytia hemisphaerica|type=transcript|length=3540bp|location=Sequence derived from alignment at scaffold_63:689687..693226- (Clytia hemisphaerica)
TTTCGACTTGACAGCAGCAAGTCATGGAAATTGATACGGAGAAAAACGCA
AAAATGGATGTGAAGAAAACCGCATTGGACCGACTCTCGATTACCACCCC
TGAAGTCTTTGAGTATGTGCCTAGAGCTAGCTCTAAGAACAACAGTCGTT
CATCAAAAAAATCTTCCACATTTAATTTCGAGAAGGCATACCATGAGATG
CTAGAGGTAGATTACTTTTTCATTCTTTTTAAATTTTTTTATTTTCAATT
GTGCCATTATATTTTCGTTTGTGCTTCTTTGATATGATCTTTAATTTATT
TTTTGTAACTCTATTAGTATATATCTCCATAGTTATTGTACTAGTCATGT
GTTAGACAGTTACCAAATAGCCCGGGGGTACTAGTGTTGTTGGATGCTGG
GTATGCTCGAGCCAGACCTCCAAACCCTGACCATTAGAGATTTTTTTGAC
AAATTTTCTTCGATTTTTGAAAAAAGTCCTATACTAAAATTCCTATCCTG
ATTTCTTTCTAAATCAAAAAACGCACATACCCAGCACCCATTTTTGCCTA
AGTACCCCCCCTCCCCCCGGGGCAAATAGTATGCGTGTGTAATAGATACA
ACAACGATCAATTCTAGTAAAGTTAATTTTCCTCTAGTATATTCAAATAT
TAATGATTCGAACTGGTCATGAAACTCAAACCGTTTGAGTTTCATGTTCG
AACTAATTGTTTGAAAGAATATTTAGGATTTATGTTTTCATTCTTCTTAA
AAATCAAATAAGTGAGACTTCGTAGATTTTAGTTTGAAGTAGCTAGAACC
AACGAGCCCCCCCCCCCTAGCGGTTTACATGATGTCGTGATTGGGAAATT
TTTTCTTCGTGATTGCGTGACGAGAGGTCAAAACGTGATCGTGATTTGAA
AGATTTTTGAGCCGTGATGCGTGATTTGGATTTTTTCAAAAAGATGTGAT
TGTCCAATTTTTTTTGCATTTTTACGTGATCATGATTCAAGACAAAAAAT
TGCGTGGTATCGTGATCAGAGTTACCACTGGGGAGCCTCGCCAATAGTTC
CACATTAGTTAAGTTTAGCACAGCCGGGCTTGCGTTTCAAGTGACAATTA
ACACTTCATTTACCGGGTTTACCATCAGTAACAAAGTCTACCAAGATAGT
GTAATGATTACAAATTAATCAAATTATTTGGCTAATATTTTACTAATAAT
TGCTTAGAAAAAAGTGCTATTGGAAATGGCCACTACAACTTCAACTTTTG
TAGCATACACTGGATAAAAGAGAGCATACTTTAGATGAGAGAGCTGCCAA
GAATTTAGACCTGAAAAAGTTGACATTAAAAAGCCTAATCAAAATCAACA
TTGCCTTGAAAATTTGTTCCAGCCTATAAAATTATAAAATCACTGAATAA
CCTTTATAATTTTTTTAGTGTATAGTGAACATACTGTAGGCGTAATTTTT
CACGAGCAAAAACCTTCACGATTTTCGCGAATTTTGGCCTTTTTCGCGAA
AGTAAATGTCTAAGTAAGTAAAGTAAGTAATCTAAAGTAAAATTTTTATC
AGGGCGATTTGCGAAAGTTTATGCTCGTGAAAAACATTTTTTCCTCAAAT
TCGTAAAAAAAAGTAAATGTCGTAAATTTCGCAATTTTTCGACCTCGCGA
AAGTTTCTGCTCGCGAAAGTGTGTACGCCTAAAGTAGGTTTAATTAGGTT
GAAGTTTTACATCTAGCCATCGGCCTAGAACTCAATGAATCTATATGTAA
ACAAGGGAAAGGATTTTGTCGAGTTAAAAAGTATTTGAAAGGCGGTGTTC
CAATATGATATCTTGGATAACTTTTCAGTAAATCTAGCCCTAGACTTATG
TCTTTTCTTATCAATATATCTTTTTTATAGAAATTGAAGTTCAAGGAGAA
CGAAGTTGCAACGTTAAAACAACATATGCAATTAATCTGTTCGGAACGGG
ACGATTTGAAAAAGGATGCAGAGTTACTGGTCGCTGTTAACAACCAATCT
TTGCACCGTTTGGGTGCAATAACTGAAGAACGACCTGAAGCATCCAAAAT
AGATGAGCTTCTAAAACGCATCCTTAAGAGCGATCAATTGATCGACGCAC
TCGCTGTAGAGCGAACGGAAAACGCGGAATTGATTCGCCACGTGCATGCT
GAAAACGGTATCTGCCGCAACACCATCCAGCTACTTAAGGAGGATATTAA
AGAGAAGGAAAAAGCTTTAGAAGCNGCTCGCTGTAGAGCGAACGGAAAAT
GCGGAATTGATTCGCCACGTGCATGCTGAAAACGGTATCTGCCGCAACAC
CATCCAGCTACTTAAGGAGGATATTAAAGAGAAGGAAAAAGCTTTAGAAG
CTAAACAAAAAGATTTAGAAGCTAAAGAAATGGTCATCGAGACCAAAGAT
GCTTCCTTGAAAACAAAAGATAAGGATCTGGACACATTTACCAAACAAAG
TCAATTAGCAATCAAAGCTAAAGATGAGATTGTGAAGGAGCTGGAGAAAA
AGATTCAAGAACTTATTGGAAGATTGATAATTGAGATAAAGAAATCTTCT
GCTTTGGAATCTTCCATTAAAGATAAGGTAGGATGGAATGTTATTTTGTT
TGTTATTGCTGAAGGTAAGGAAGCTGAAATTCCTGAGTTTTCACCAAAAT
AAAAAGCTGAACAGTTAGGGCTTTTTTCCAGAAAATGTCCGTACATGGGG
GTGGAGGATATAGTGTCCGGGGGTAGTGAAAAATCTACAAAATTTGCCTT
GTCCGGTGGCAATTTTGCTATGTACCCCAAACAAATTTTTAATGTACAGG
GGTCAAATGATGCTTGTTGAAGAGAGTTAGACCTGCTGTCAGGGGTGTCA
AAGGTCACAATGTCCGGGGGGTAAATTTCCAAGAAATGTTATATCCTCCA
CCCTATCCCATTTTCAATTTTTTTCTGGAAAAGCCCATTGACAGACTTTT
GACTAAAAATAACATCAATTTGGTTGAAAGTATCTACGTACACTTACTCA
ATGGTATTCTCGAAACTATATCACCATAACAGAGCTATATTTGTGTCCAT
CGATAATCTTAACAGTGAAATTCAGTCCCTTTGATATTTCAACATCCCAA
AGGCACAAAAACTATAATTTAATAATACGCAAGCAAATCTTTAAATTGAT
TTATCTTTAGGACAAGACAATTCAGAATTACAAAACAAAATCGACTGAGC
AAGCTCAGTTAATTGAGCAACTGAACAACGACATTGACCAACGGAGAAAC
AGAATCAAGGAGTTGACATTGTTGAAAATGGAGCATTATGAAAAGCTAGA
CGAAAACGAGGCCACCATCGAACAGCTTTGGGCTGAATTACAATACATGA
AGAATAATACCTTCAAGAAGAAATGTAAAAAACTATTTAGCTGCAGATCC
TCTCGCTCCCAGCCGGCAGAACGCGAGCGACCTGTTGCTAGGCAACAAAA
ACAAGATGGCACACTCAGACATGAGGAGGATACGAAGGCTTCATCTTCCA
GACAAGCTCCACTAATGGACGCTAAATTAAACGACATAGG

Coding sequence (CDS) from alignment at scaffold_63:689687..693226-

>TCONS_00071744 ID=TCONS_00071744|Name=TCONS_00071744|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_63:689687..693226- (Clytia hemisphaerica)
AAATTGAAGTTCAAGGAGAACGAAGTTGCAACGTTAAAACAACATATGCA
ATTAATCTGTTCGGAACGGGACGATTTGAAAAAGGATGCAGAGTTACTGG
TCGCTGTTAACAACCAATCTTTGCACCGTTTGGGTGCAATAACTGAAGAA
CGACCTGAAGCATCCAAAATAGATGAGCTTCTAAAACGCATCCTTAAGAG
CGATCAATTGATCGACGCACTCGCTGTAGAGCGAACGGAAAACGCGGAAT
TGATTCGCCACGTGCATGCTGAAAACGGTATCTGCCGCAACACCATCCAG
CTACTTAAGGAGGATATTAAAGAGAAGGAAAAAGCTTTAGAAGCNGCTCG
CTGTAGAGCGAACGGAAAATGCGGAATTGATTCGCCACGTGCATGCTGAA
TGGAAATTGATACGGAGAAAAACGCAAAAATGGATGTGAAGAAAACCGCA
TTGGACCGACTCTCGATTACCACCCCTGAAGTCTTTGAGTATGTGCCTAG
AGCTAGCTCTAAGAACAACAGTCGTTCATCAAAAAAATCTTCCACATTTA
ATTTCGAGAAGGCATACCATGAGATGCTAGAGAAATTGAAGTTCAAGGAG
AACGAAGTTGCAACGTTAAAACAACATATGCAATTAATCTGTTCGGAACG
GGACGATTTGAAAAAGGATGCAGAGTTACTGGTCGCTGTTAACAACCAAT
CTTTGCACCGTTTGGGTGCAATAACTGAAGAACGACCTGAAGCATCCAAA
ATAGATGAGCTTCTAAAACGCATCCTTAAGAGCGATCAATTGATCGACGC
ACTCGCTGTAGAGCGAACGGAAAACGCGGAATTGATTCGCCACGTGCATG
CTGAAAACGGTATCTGCCGCAACACCATCCAGCTACTTAAGGAGGATATT
AAAGAGAAGGAAAAAGCTTTAGAAGCNGCTCGCTGTAGAGCGAACGGAAA
ATGCGGAATTGATTCGCCACGTGCATGCTGAATGGAAATTGATACGGAGA
AAAACGCAAAAATGGATGTGAAGAAAACCGCATTGGACCGACTCTCGATT
ACCACCCCTGAAGTCTTTGAGTATGTGCCTAGAGCTAGCTCTAAGAACAA
CAGTCGTTCATCAAAAAAATCTTCCACATTTAATTTCGAGAAGGCATACC
ATGAGATGCTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044553XLOC_044553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071744-proteinTCONS_00071744-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071744-exon-scaffold_63-1575043694:693021..693226TCONS_00071744-exon-scaffold_63-1575043694:693021..693226Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1575043694:690650..691346TCONS_00071744-exon-scaffold_63-1575043694:690650..691346Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1575043694:689687..690066TCONS_00071744-exon-scaffold_63-1575043694:689687..690066Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1510915933:693021..693226TCONS_00071744-exon-scaffold_63-1510915933:693021..693226Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1510915933:690650..691346TCONS_00071744-exon-scaffold_63-1510915933:690650..691346Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1510915933:689687..690066TCONS_00071744-exon-scaffold_63-1510915933:689687..690066Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1491911889:693021..693226TCONS_00071744-exon-scaffold_63-1491911889:693021..693226Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1491911889:690650..691346TCONS_00071744-exon-scaffold_63-1491911889:690650..691346Clytia hemisphaericaexon
TCONS_00071744-exon-scaffold_63-1491911889:689687..690066TCONS_00071744-exon-scaffold_63-1491911889:689687..690066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:689687..693226 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.0743591 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0522328	0	0	0	0	0	0	0	0.0228154	0	0	0	0	0	0	0	0	0	0	0.0354664	0.0743591	0	0	0.0366644	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Sequence
Match NameE-valueIdentityDescription
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