TCONS_00071743 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071743
Unique Name	TCONS_00071743
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1916

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_63:688369..690284-

transcript sequence

>TCONS_00071743 ID=TCONS_00071743|Name=TCONS_00071743|organism=Clytia hemisphaerica|type=transcript|length=1916bp
aGACTTTTGACTAAAAATAACATCAATTTGGTTGAAAGTATCTACGTACA
CTTACTCAATGGTATTCTCGAAACTATATCACCATAACAGAGCTATATTT
GTGTCCATCGATAATCTTAACAGTGAAATTCAGTCCCTTTGATATTTCAA
CATCCCAAAGGCACAAAAACTATAATTTAATAATACGCAAGCAAATCTTT
AAATTGATTTATCTTTAGGACAAGACAATTCAGAATTACAAAACAAAATC
GACTGAGCAAGCTCAGTTAATTGAGCAACTGAACAACGACATTGACCAAC
GGAGAAACAGAATCAAGGAGTTGACATTGTTGAAAATGGAGCATTATGAA
AAGCTAGACGAAAACGAGGCCACCATCGAACAGCTTTGGGCTGAATTACA
ATACATGAAGAATAATACCTTCAAGAAGAAATGTAAAAAACTATTTAGCT
GCAGATCCTCTCGCTCCCAGCCGGCAGAACGCGAGCGACCTGTTGCTAGG
CAACAAAAACAAGATGGCACACTCAGACATGAGGAGGATACGAAGGCTTC
ATCTTCCAGACAAGCTCCACTAATGGACGCTAAATTAAACGACATAGGTA
GCACCAATGCTTCAAAATCACCAAAAGCTGTTGGCAAAAACCCTGACTCA
GCAACTTCTAACTGTGGTTCTATTGAATGTGAAAAAGCTGGTAAAACAGG
GGCTTTAGCAGATAAAGCATCCAATGTGACTACAGGAGTACCAGGAATTA
ACTCAAATGCTGGTGATGTAGTTACACCAGAGCAAGACAAAAATGTTATA
ACAACAGTTGGTACAAACAAATGCAACTTCAAAATACCTGAAATCATAAT
CACACCACCAACCACTCCTTCTGGTGAAAATGTTGCAGTTGCACAAGGCC
CAAACGTGGCTCCCAAACCAAAAATTGTGATCGTCACAGAGACTGGTGCC
AATAGTCTGGATATAACTCCACAAGATAATGACGCATCGGCTCAAAAATC
TCTCGGGAGCCAAGCCGTCGCCCAAAAACCAGATGACGTCATGAGCGTAC
ACTCAGCACAAAAAATTGACATCGTCGATAGCCAAGCCCTGGCTCCTAAA
CCAGAAGGACCTTTGAGTACTCACCCACAAAAGATAAGTGTTGCTGAAAG
CCAAGTTATGGCCCTAAAGCCAGAAGGGGTCTTGAGCACACAATACGCAC
CAAAGATAGGCGTTGTTGATAGCCAGGCAGTTGCCAATAAGCCAGAGGGC
GTCTTAAGCGTACTACACGTTGATGTCACCGAAAGCCAAGCCGTGGCATC
AACAGAAGAATGCATCTTGGAAGAGCCATCAGCAGGTAAATACGATGTTG
CCGAAAGCAAAGAAGTTATTCCAACGTCAGATGCTGTTCCAAGCATCTTA
TCTATTAACAAAGCAACATTAGCCAAAGGACCACAAAAGGTTAAGAAGCC
AAATTTGACTTTCAGTGTAACCACTATTGTTAGTTGCACATCCAGTGCAA
TGGAAACCAGCACCACCAACAATGAAGCTGCAACATCTGTCAATGAACAT
GATAGCACACAACACGCAACAAATGAACAAAATGAAGTCGCTGGACGACA
ACCAAATCTTGCtcaataatttttaaattttttaacccTTAATAAGCCGT
ATAATACTGTAATGTCATTGCATTTGACCTACCTACTCTCCATCCATTAT
CTTTTCTACAATCTGCTATCCCTACTCTTCTGCGTCCACTTGAATTACTA
TTTAATCAGTCATCCATCGACTCACTTACCCAATCAATCATTTCATACCA
TAACACAACTCATCACATCATTCTAATCTTCTAAACAATCTAAATCCCCC
CATCttatcttaaaaaaatttttcgatgtatatttttttctttcttcata
aaataataaaaaaaac

Run BLAST on NCBI

transcript from alignment at scaffold_63:688369..690284-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071743 ID=TCONS_00071743|Name=TCONS_00071743|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at scaffold_63:688369..690284- (Clytia hemisphaerica)
AGACTTTTGACTAAAAATAACATCAATTTGGTTGAAAGTATCTACGTACA
CTTACTCAATGGTATTCTCGAAACTATATCACCATAACAGAGCTATATTT
GTGTCCATCGATAATCTTAACAGTGAAATTCAGTCCCTTTGATATTTCAA
CATCCCAAAGGCACAAAAACTATAATTTAATAATACGCAAGCAAATCTTT
AAATTGATTTATCTTTAGGACAAGACAATTCAGAATTACAAAACAAAATC
GACTGAGCAAGCTCAGTTAATTGAGCAACTGAACAACGACATTGACCAAC
GGAGAAACAGAATCAAGGAGTTGACATTGTTGAAAATGGAGCATTATGAA
AAGCTAGACGAAAACGAGGCCACCATCGAACAGCTTTGGGCTGAATTACA
ATACATGAAGAATAATACCTTCAAGAAGAAATGTAAAAAACTATTTAGCT
GCAGATCCTCTCGCTCCCAGCCGGCAGAACGCGAGCGACCTGTTGCTAGG
CAACAAAAACAAGATGGCACACTCAGACATGAGGAGGATACGAAGGCTTC
ATCTTCCAGACAAGCTCCACTAATGGACGCTAAATTAAACGACATAGGTA
GCACCAATGCTTCAAAATCACCAAAAGCTGTTGGCAAAAACCCTGACTCA
GCAACTTCTAACTGTGGTTCTATTGAATGTGAAAAAGCTGGTAAAACAGG
GGCTTTAGCAGATAAAGCATCCAATGTGACTACAGGAGTACCAGGAATTA
ACTCAAATGCTGGTGATGTAGTTACACCAGAGCAAGACAAAAATGTTATA
ACAACAGTTGGTACAAACAAATGCAACTTCAAAATACCTGAAATCATAAT
CACACCACCAACCACTCCTTCTGGTGAAAATGTTGCAGTTGCACAAGGCC
CAAACGTGGCTCCCAAACCAAAAATTGTGATCGTCACAGAGACTGGTGCC
AATAGTCTGGATATAACTCCACAAGATAATGACGCATCGGCTCAAAAATC
TCTCGGGAGCCAAGCCGTCGCCCAAAAACCAGATGACGTCATGAGCGTAC
ACTCAGCACAAAAAATTGACATCGTCGATAGCCAAGCCCTGGCTCCTAAA
CCAGAAGGACCTTTGAGTACTCACCCACAAAAGATAAGTGTTGCTGAAAG
CCAAGTTATGGCCCTAAAGCCAGAAGGGGTCTTGAGCACACAATACGCAC
CAAAGATAGGCGTTGTTGATAGCCAGGCAGTTGCCAATAAGCCAGAGGGC
GTCTTAAGCGTACTACACGTTGATGTCACCGAAAGCCAAGCCGTGGCATC
AACAGAAGAATGCATCTTGGAAGAGCCATCAGCAGGTAAATACGATGTTG
CCGAAAGCAAAGAAGTTATTCCAACGTCAGATGCTGTTCCAAGCATCTTA
TCTATTAACAAAGCAACATTAGCCAAAGGACCACAAAAGGTTAAGAAGCC
AAATTTGACTTTCAGTGTAACCACTATTGTTAGTTGCACATCCAGTGCAA
TGGAAACCAGCACCACCAACAATGAAGCTGCAACATCTGTCAATGAACAT
GATAGCACACAACACGCAACAAATGAACAAAATGAAGTCGCTGGACGACA
ACCAAATCTTGCTCAATAATTTTTAAATTTTTTAACCCTTAATAAGCCGT
ATAATACTGTAATGTCATTGCATTTGACCTACCTACTCTCCATCCATTAT
CTTTTCTACAATCTGCTATCCCTACTCTTCTGCGTCCACTTGAATTACTA
TTTAATCAGTCATCCATCGACTCACTTACCCAATCAATCATTTCATACCA
TAACACAACTCATCACATCATTCTAATCTTCTAAACAATCTAAATCCCCC
CATCTTATCTTAAAAAAATTTTTCGATGTATATTTTTTTCTTTCTTCATA
AAATAATAAAAAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044553	XLOC_044553	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071743-exon-scaffold_63-1575043694:688369..690284	TCONS_00071743-exon-scaffold_63-1575043694:688369..690284	Clytia hemisphaerica	exon
TCONS_00071743-exon-scaffold_63-1510915933:688369..690284	TCONS_00071743-exon-scaffold_63-1510915933:688369..690284	Clytia hemisphaerica	exon
TCONS_00071743-exon-scaffold_63-1491911889:688369..690284	TCONS_00071743-exon-scaffold_63-1491911889:688369..690284	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:688369..690284 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0202674	0.0470647	0	0.0840839	0.0557288	0.0267207	0	0.017514	0.0433879	0	0.0138418	0.0138226	0	0.0472066	0	0	0	0	0	0	0	0	0	0.111573	0.351519	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00071743 vs. Swiss-Prot (Human)

BLAST of TCONS_00071743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0

ZOOM

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POSITION

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Match Name	E-value	Identity	Description

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TCONS_00071743 (transcript) - C. hemisphaerica

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POSITION

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