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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=transcript|length=1119bp
CAAAAGTCAAACAGGacgaaatttaatgtttccgGTATAAAACAGCACTT
TGGCACGTATATAAATAGAGGCTAATTGAAATCAGTGGTTTATATTTGAA
GAAAGAAAGGCTAACTGgaacaaaattgaaaagaagaaaaatggaaTTTT
CGAGTGTTATAATCATCAGTGCATTGATTGCAATTACAGCATGCAGCGAC
AGCTGCCCCTCAACGACACTAacaaataaatgcaatcgactATGTCAACC
ACCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAAGGGAT
ATACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGGTTGAA
GCATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCGTCGCT
ATCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAGATGTC
AAAGCCAAGTAGGAAGTTGCGTAACTGATGGTGAATACAAAGGCAAATGT
TTATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATCGAAACAGG
TGGAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAATTCTGATT
GTACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTGGCATCAGT
TTCGCTTATTACAAATAAATATTCCAATCAAAAcaaccctgtgtcacaga
ctcattgggaccccagccccactgaaatAATTGGCAAAGATTTGGTCCTC
GGTGGGAAAATactctggaatttcagccccactgggaaatcgactttgat
ttcatccctactcaaaaatcaatatctaaaaattgcactccaaaaccatc
cacactagattttttaaccttggaacaataaaatttctatccccgttGAG
ATTTCATAgggatttttatccccgctaaagaaaaaagttccaccagggtt
gtgagacaggggtgtattgaaCGAGTCAAATACCAAATCCCAACTAAGTA
ACAAACTGTGCtgttaaaattcttatttgtattaattttgtgaatattga
ttatttttaactgtaaagaaaaaaaaagacaaagtcAAAAGAcccaaaat
caaaattcttgACTCAAAC Run BLAST on NCBI protein sequence of TCONS_00071742-protein >TCONS_00071742-protein ID=TCONS_00071742-protein|Name=TCONS_00071742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MEFSSVIIISALIAITACSDSCPSTTLTNKCNRLCQPPEGECQDDGYCLC
KKGYTGPDNKPYAKDNSRVEASHCLLTCNDNPANPSLSKNQHQPCLYTCD
ARCQSQVGSCVTDGEYKGKCLCWWGHTGPNALFIETGGNRGRIYADYCKP
NSDCTGWSVLDRWCADSGISFAYYK Run BLAST on NCBI transcript from alignment at scaffold_63:685383..687159- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at scaffold_63:685383..687159- (Clytia hemisphaerica)
CAAAAGTCAAACAGGACGAAATTTAATGTTTCCGGTATAAAACAGCACTT
TGGCACGTATATAAATAGAGGCTAATTGAAATCAGTGGTTTATATTTGAA
GAAAGAAAGGCTAACTGGAACAAAATTGAAAAGAAGAAAAATGGAATTTT
CGAGTGTTATAATCATCAGTGCATTGATTGCAATTACAGGTAACAGATTA
TCTGATTCTAAACCTATGAAGGGGTTCACCTTAGCAAGTAAAGGGTGCAA
GTATGTGCTAACCTCCCGGGAGGGTACTAGGTTTGCGAGATGATGGTACT
TTCGAGGGTGTGAAAAAGGGACCCCTATAATCGCACATACCCCCAGCACC
AATTTAGCCTAAGGGGGGGGCTACCCTTATTAGGTTTAAAGGTACCTTTT
TGGAACCTGGAATTGTAAAATTCCCAAAATTTTCCTTTCTTTCTCCTTTT
CAATCTCCCCTGATGGTCCGAGGTTCGACATTCAACACTGATAAACTGAA
GTTCAATCCAATTTCTACAGCTTTTGGTTGATAAGTGTTTGTTTGGTATT
TTTCAGCATGCAGCGACAGCTGCCCCTCAACGACACTAACAAATAAATGC
AATCGACTATGTCAACCACCTGAAGGAGAATGTCAGGATGATGGTTACTG
TCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCATATGCAAAGG
ATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTGTAATGACAAT
CCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACAC
GTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGGTA
GGTCAAAATTTCATATATTCCATGCCAGAAGTTTTACAGAAACATTTCTT
TCTGGACTATTTTTTGATTTGCCTGGAGAAACTCCCTTAAATAGCGTTCA
GGCCGGTCTCCACTTGCGCACGCTACGATCGTACTTTTTCGAACAAAGCT
TCCATGCTATTGGTCAAAAGATAAATGAAGCAATTCATTGGCGTGATCTG
ACGTAAAGTTTAAATAAGTTGAACTGCACTTTTGACCAAAAGTATTTGAA
AAAGATAAAGGATATAGTTTTCTTTTTTTACTGTTTAGGTGAATACAAAG
GCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATC
GAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAA
TTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTG
GCATCAGTTTCGCTTATTACAAATAAATATTCCAATCAAAACAACCCTGT
GTCACAGACTCATTGGGACCCCAGCCCCACTGAAATAATTGGCAAAGATT
TGGTCCTCGGTGGGAAAATACTCTGGAATTTCAGCCCCACTGGGAAATCG
ACTTTGATTTCATCCCTACTCAAAAATCAATATCTAAAAATTGCACTCCA
AAACCATCCACACTAGATTTTTTAACCTTGGAACAATAAAATTTCTATCC
CCGTTGAGATTTCATAGGGATTTTTATCCCCGCTAAAGAAAAAAGTTCCA
CCAGGGTTGTGAGACAGGGGTGTATTGAACGAGTCAAATACCAAATCCCA
ACTAAGTAACAAACTGTGCTGTTAAAATTCTTATTTGTATTAATTTTGTG
AATATTGATTATTTTTAACTGTAAAGAAAAAAAAAGACAAAGTCAAAAGA
CCCAAAATCAAAATTCTTGACTCAAAC Coding sequence (CDS) from alignment at scaffold_63:685383..687159- >TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_63:685383..687159- (Clytia hemisphaerica)
GTGAATACAAAGGCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAAT
GCATTATTCATCGAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTA
TTGTAAACCTAATTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGT
GTGCTGATAGTGGCATCAGTTTCGCTTATTACAAATAACATGCAGCGACA
GCTGCCCCTCAACGACACTAACAAATAAATGCAATCGACTATGTCAACCA
CCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAAGGGATA
TACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGGTTGAAG
CATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCGTCGCTA
TCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAGATGTCA
AAGCCAAGTAGGAAGTTGCGTAACTGATGATGGAATTTTCGAGTGTTATA
ATCATCAGTGCATTGATTGCAATTACAGGTGAATACAAAGGCAAATGTTT
ATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATCGAAACAGGTG
GAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAATTCTGATTGT
ACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTGGCATCAGTTT
CGCTTATTACAAATAACATGCAGCGACAGCTGCCCCTCAACGACACTAAC
AAATAAATGCAATCGACTATGTCAACCACCTGAAGGAGAATGTCAGGATG
ATGGTTACTGTCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCA
TATGCAAAGGATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTG
TAATGACAATCCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTT
GTCTTTACACGTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTA
ACTGATGATGGAATTTTCGAGTGTTATAATCATCAGTGCATTGATTGCAA
TTACAGGTGAATACAAAGGCAAATGTTTATGTTGGTGGGGTCATACCGGA
CCAAATGCATTATTCATCGAAACAGGTGGAAACAGAGGAAGAATCTATGC
TGATTATTGTAAACCTAATTCTGATTGTACTGGATGGAGTGTCCTTGATC
GTTGGTGTGCTGATAGTGGCATCAGTTTCGCTTATTACAAATAACATGCA
GCGACAGCTGCCCCTCAACGACACTAACAAATAAATGCAATCGACTATGT
CAACCACCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAA
GGGATATACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGG
TTGAAGCATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCG
TCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAG
ATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGATGGAATTTTCGAGT
GTTATAATCATCAGTGCATTGATTGCAATTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071742-exon-scaffold_63-1575043694:686971..687159 | TCONS_00071742-exon-scaffold_63-1575043694:686971..687159 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1575043694:686313..686603 | TCONS_00071742-exon-scaffold_63-1575043694:686313..686603 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1575043694:685383..686021 | TCONS_00071742-exon-scaffold_63-1575043694:685383..686021 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1510915933:686971..687159 | TCONS_00071742-exon-scaffold_63-1510915933:686971..687159 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1510915933:686313..686603 | TCONS_00071742-exon-scaffold_63-1510915933:686313..686603 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1510915933:685383..686021 | TCONS_00071742-exon-scaffold_63-1510915933:685383..686021 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1491911889:686971..687159 | TCONS_00071742-exon-scaffold_63-1491911889:686971..687159 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1491911889:686313..686603 | TCONS_00071742-exon-scaffold_63-1491911889:686313..686603 | Clytia hemisphaerica | exon |
| TCONS_00071742-exon-scaffold_63-1491911889:685383..686021 | TCONS_00071742-exon-scaffold_63-1491911889:685383..686021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:685383..687159 - |
Blast
The following BLAST results are available for this feature:
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