TCONS_00071742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071742
Unique NameTCONS_00071742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=transcript|length=1119bp
CAAAAGTCAAACAGGacgaaatttaatgtttccgGTATAAAACAGCACTT
TGGCACGTATATAAATAGAGGCTAATTGAAATCAGTGGTTTATATTTGAA
GAAAGAAAGGCTAACTGgaacaaaattgaaaagaagaaaaatggaaTTTT
CGAGTGTTATAATCATCAGTGCATTGATTGCAATTACAGCATGCAGCGAC
AGCTGCCCCTCAACGACACTAacaaataaatgcaatcgactATGTCAACC
ACCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAAGGGAT
ATACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGGTTGAA
GCATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCGTCGCT
ATCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAGATGTC
AAAGCCAAGTAGGAAGTTGCGTAACTGATGGTGAATACAAAGGCAAATGT
TTATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATCGAAACAGG
TGGAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAATTCTGATT
GTACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTGGCATCAGT
TTCGCTTATTACAAATAAATATTCCAATCAAAAcaaccctgtgtcacaga
ctcattgggaccccagccccactgaaatAATTGGCAAAGATTTGGTCCTC
GGTGGGAAAATactctggaatttcagccccactgggaaatcgactttgat
ttcatccctactcaaaaatcaatatctaaaaattgcactccaaaaccatc
cacactagattttttaaccttggaacaataaaatttctatccccgttGAG
ATTTCATAgggatttttatccccgctaaagaaaaaagttccaccagggtt
gtgagacaggggtgtattgaaCGAGTCAAATACCAAATCCCAACTAAGTA
ACAAACTGTGCtgttaaaattcttatttgtattaattttgtgaatattga
ttatttttaactgtaaagaaaaaaaaagacaaagtcAAAAGAcccaaaat
caaaattcttgACTCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00071742-protein

>TCONS_00071742-protein ID=TCONS_00071742-protein|Name=TCONS_00071742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MEFSSVIIISALIAITACSDSCPSTTLTNKCNRLCQPPEGECQDDGYCLC
KKGYTGPDNKPYAKDNSRVEASHCLLTCNDNPANPSLSKNQHQPCLYTCD
ARCQSQVGSCVTDGEYKGKCLCWWGHTGPNALFIETGGNRGRIYADYCKP
NSDCTGWSVLDRWCADSGISFAYYK
Run BLAST on NCBI

transcript from alignment at scaffold_63:685383..687159-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at scaffold_63:685383..687159- (Clytia hemisphaerica)
CAAAAGTCAAACAGGACGAAATTTAATGTTTCCGGTATAAAACAGCACTT
TGGCACGTATATAAATAGAGGCTAATTGAAATCAGTGGTTTATATTTGAA
GAAAGAAAGGCTAACTGGAACAAAATTGAAAAGAAGAAAAATGGAATTTT
CGAGTGTTATAATCATCAGTGCATTGATTGCAATTACAGGTAACAGATTA
TCTGATTCTAAACCTATGAAGGGGTTCACCTTAGCAAGTAAAGGGTGCAA
GTATGTGCTAACCTCCCGGGAGGGTACTAGGTTTGCGAGATGATGGTACT
TTCGAGGGTGTGAAAAAGGGACCCCTATAATCGCACATACCCCCAGCACC
AATTTAGCCTAAGGGGGGGGCTACCCTTATTAGGTTTAAAGGTACCTTTT
TGGAACCTGGAATTGTAAAATTCCCAAAATTTTCCTTTCTTTCTCCTTTT
CAATCTCCCCTGATGGTCCGAGGTTCGACATTCAACACTGATAAACTGAA
GTTCAATCCAATTTCTACAGCTTTTGGTTGATAAGTGTTTGTTTGGTATT
TTTCAGCATGCAGCGACAGCTGCCCCTCAACGACACTAACAAATAAATGC
AATCGACTATGTCAACCACCTGAAGGAGAATGTCAGGATGATGGTTACTG
TCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCATATGCAAAGG
ATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTGTAATGACAAT
CCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACAC
GTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGGTA
GGTCAAAATTTCATATATTCCATGCCAGAAGTTTTACAGAAACATTTCTT
TCTGGACTATTTTTTGATTTGCCTGGAGAAACTCCCTTAAATAGCGTTCA
GGCCGGTCTCCACTTGCGCACGCTACGATCGTACTTTTTCGAACAAAGCT
TCCATGCTATTGGTCAAAAGATAAATGAAGCAATTCATTGGCGTGATCTG
ACGTAAAGTTTAAATAAGTTGAACTGCACTTTTGACCAAAAGTATTTGAA
AAAGATAAAGGATATAGTTTTCTTTTTTTACTGTTTAGGTGAATACAAAG
GCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATC
GAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAA
TTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTG
GCATCAGTTTCGCTTATTACAAATAAATATTCCAATCAAAACAACCCTGT
GTCACAGACTCATTGGGACCCCAGCCCCACTGAAATAATTGGCAAAGATT
TGGTCCTCGGTGGGAAAATACTCTGGAATTTCAGCCCCACTGGGAAATCG
ACTTTGATTTCATCCCTACTCAAAAATCAATATCTAAAAATTGCACTCCA
AAACCATCCACACTAGATTTTTTAACCTTGGAACAATAAAATTTCTATCC
CCGTTGAGATTTCATAGGGATTTTTATCCCCGCTAAAGAAAAAAGTTCCA
CCAGGGTTGTGAGACAGGGGTGTATTGAACGAGTCAAATACCAAATCCCA
ACTAAGTAACAAACTGTGCTGTTAAAATTCTTATTTGTATTAATTTTGTG
AATATTGATTATTTTTAACTGTAAAGAAAAAAAAAGACAAAGTCAAAAGA
CCCAAAATCAAAATTCTTGACTCAAAC

Coding sequence (CDS) from alignment at scaffold_63:685383..687159-

>TCONS_00071742 ID=TCONS_00071742|Name=TCONS_00071742|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_63:685383..687159- (Clytia hemisphaerica)
GTGAATACAAAGGCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAAT
GCATTATTCATCGAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTA
TTGTAAACCTAATTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGT
GTGCTGATAGTGGCATCAGTTTCGCTTATTACAAATAACATGCAGCGACA
GCTGCCCCTCAACGACACTAACAAATAAATGCAATCGACTATGTCAACCA
CCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAAGGGATA
TACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGGTTGAAG
CATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCGTCGCTA
TCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAGATGTCA
AAGCCAAGTAGGAAGTTGCGTAACTGATGATGGAATTTTCGAGTGTTATA
ATCATCAGTGCATTGATTGCAATTACAGGTGAATACAAAGGCAAATGTTT
ATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCATCGAAACAGGTG
GAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTAATTCTGATTGT
ACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGTGGCATCAGTTT
CGCTTATTACAAATAACATGCAGCGACAGCTGCCCCTCAACGACACTAAC
AAATAAATGCAATCGACTATGTCAACCACCTGAAGGAGAATGTCAGGATG
ATGGTTACTGTCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCA
TATGCAAAGGATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTG
TAATGACAATCCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTT
GTCTTTACACGTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTA
ACTGATGATGGAATTTTCGAGTGTTATAATCATCAGTGCATTGATTGCAA
TTACAGGTGAATACAAAGGCAAATGTTTATGTTGGTGGGGTCATACCGGA
CCAAATGCATTATTCATCGAAACAGGTGGAAACAGAGGAAGAATCTATGC
TGATTATTGTAAACCTAATTCTGATTGTACTGGATGGAGTGTCCTTGATC
GTTGGTGTGCTGATAGTGGCATCAGTTTCGCTTATTACAAATAACATGCA
GCGACAGCTGCCCCTCAACGACACTAACAAATAAATGCAATCGACTATGT
CAACCACCTGAAGGAGAATGTCAGGATGATGGTTACTGTCTTTGTAAAAA
GGGATATACGGGACCTGATAACAAACCATATGCAAAGGATAACAGCCGGG
TTGAAGCATCACACTGTTTATTGACTTGTAATGACAATCCAGCCAATCCG
TCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACACGTGTGATGCTAG
ATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGATGGAATTTTCGAGT
GTTATAATCATCAGTGCATTGATTGCAATTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044552XLOC_044552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071742-proteinTCONS_00071742-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071742-exon-scaffold_63-1575043694:686971..687159TCONS_00071742-exon-scaffold_63-1575043694:686971..687159Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1575043694:686313..686603TCONS_00071742-exon-scaffold_63-1575043694:686313..686603Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1575043694:685383..686021TCONS_00071742-exon-scaffold_63-1575043694:685383..686021Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1510915933:686971..687159TCONS_00071742-exon-scaffold_63-1510915933:686971..687159Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1510915933:686313..686603TCONS_00071742-exon-scaffold_63-1510915933:686313..686603Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1510915933:685383..686021TCONS_00071742-exon-scaffold_63-1510915933:685383..686021Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1491911889:686971..687159TCONS_00071742-exon-scaffold_63-1491911889:686971..687159Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1491911889:686313..686603TCONS_00071742-exon-scaffold_63-1491911889:686313..686603Clytia hemisphaericaexon
TCONS_00071742-exon-scaffold_63-1491911889:685383..686021TCONS_00071742-exon-scaffold_63-1491911889:685383..686021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:685383..687159 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (133.269 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.355806	0.179524	0	0	0.280668	0.677103	0	0	0.871174	10.4565	6.70124	133.269	29.2887	1.05361	0.351127	0	0.186218	0	0.330948	0	0	0.100759	0.262269	0	0	0.086544	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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