TCONS_00071741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071741
Unique NameTCONS_00071741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071741 ID=TCONS_00071741|Name=TCONS_00071741|organism=Clytia hemisphaerica|type=transcript|length=1137bp
CAATTTAGCCTAAGGGGGGGGCTACCCTTATTAGGTTTAAAGGTACCTTT
TTGGAACCTGGAAttgtaaaattcccaaaattttcctttctttctccttt
tcaaTCTCCCCTGATGGTCCGAGGTTCGACATTCAACACTGATAAACTGA
AGTTCAATCCAATTTCTACAGCTTTTGGTTGATAAGTGTTTGTTTGGTAT
TTTTCAGCATGCAGCGACAGCTGCCCCTCAACGACACTAacaaataaatg
caatcgactATGTCAACCACCTGAAGGAGAATGTCAGGATGATGGTTACT
GTCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCATATGCAAAG
GATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTGTAATGACAA
TCCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACA
CGTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGGT
GAATACAAAGGCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAATGC
ATTATTCATCGAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTATT
GTAAACCTAATTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGTGT
GCTGATAGTGGCATCAGTTTCGCTTATTACAAATAAATATTCCAATCAAA
AcaaccctgtgtcacagactcattgggaccccagccccactgaaatAATT
GGCAAAGATTTGGTCCTCGGTGGGAAAATactctggaatttcagccccac
tgggaaatcgactttgatttcatccctactcaaaaatcaatatctaaaaa
ttgcactccaaaaccatccacactagattttttaaccttggaacaataaa
atttctatccccgttGAGATTTCATAgggatttttatccccgctaaagaa
aaaagttccaccagggttgtgagacaggggtgtattgaaCGAGTCAAATA
CCAAATCCCAACTAAGTAACAAACTGTGCtgttaaaattcttatttgtat
taattttgtgaatattgattatttttaactgtaaagaaaaaaaaagacaa
agtcAAAAGAcccaaaatcaaaattcttgACTCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:685383..686810-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071741 ID=TCONS_00071741|Name=TCONS_00071741|organism=Clytia hemisphaerica|type=transcript|length=1428bp|location=Sequence derived from alignment at scaffold_63:685383..686810- (Clytia hemisphaerica)
CAATTTAGCCTAAGGGGGGGGCTACCCTTATTAGGTTTAAAGGTACCTTT
TTGGAACCTGGAATTGTAAAATTCCCAAAATTTTCCTTTCTTTCTCCTTT
TCAATCTCCCCTGATGGTCCGAGGTTCGACATTCAACACTGATAAACTGA
AGTTCAATCCAATTTCTACAGCTTTTGGTTGATAAGTGTTTGTTTGGTAT
TTTTCAGCATGCAGCGACAGCTGCCCCTCAACGACACTAACAAATAAATG
CAATCGACTATGTCAACCACCTGAAGGAGAATGTCAGGATGATGGTTACT
GTCTTTGTAAAAAGGGATATACGGGACCTGATAACAAACCATATGCAAAG
GATAACAGCCGGGTTGAAGCATCACACTGTTTATTGACTTGTAATGACAA
TCCAGCCAATCCGTCGCTATCGAAAAATCAGCATCAACCTTGTCTTTACA
CGTGTGATGCTAGATGTCAAAGCCAAGTAGGAAGTTGCGTAACTGATGGT
AGGTCAAAATTTCATATATTCCATGCCAGAAGTTTTACAGAAACATTTCT
TTCTGGACTATTTTTTGATTTGCCTGGAGAAACTCCCTTAAATAGCGTTC
AGGCCGGTCTCCACTTGCGCACGCTACGATCGTACTTTTTCGAACAAAGC
TTCCATGCTATTGGTCAAAAGATAAATGAAGCAATTCATTGGCGTGATCT
GACGTAAAGTTTAAATAAGTTGAACTGCACTTTTGACCAAAAGTATTTGA
AAAAGATAAAGGATATAGTTTTCTTTTTTTACTGTTTAGGTGAATACAAA
GGCAAATGTTTATGTTGGTGGGGTCATACCGGACCAAATGCATTATTCAT
CGAAACAGGTGGAAACAGAGGAAGAATCTATGCTGATTATTGTAAACCTA
ATTCTGATTGTACTGGATGGAGTGTCCTTGATCGTTGGTGTGCTGATAGT
GGCATCAGTTTCGCTTATTACAAATAAATATTCCAATCAAAACAACCCTG
TGTCACAGACTCATTGGGACCCCAGCCCCACTGAAATAATTGGCAAAGAT
TTGGTCCTCGGTGGGAAAATACTCTGGAATTTCAGCCCCACTGGGAAATC
GACTTTGATTTCATCCCTACTCAAAAATCAATATCTAAAAATTGCACTCC
AAAACCATCCACACTAGATTTTTTAACCTTGGAACAATAAAATTTCTATC
CCCGTTGAGATTTCATAGGGATTTTTATCCCCGCTAAAGAAAAAAGTTCC
ACCAGGGTTGTGAGACAGGGGTGTATTGAACGAGTCAAATACCAAATCCC
AACTAAGTAACAAACTGTGCTGTTAAAATTCTTATTTGTATTAATTTTGT
GAATATTGATTATTTTTAACTGTAAAGAAAAAAAAAGACAAAGTCAAAAG
ACCCAAAATCAAAATTCTTGACTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044552XLOC_044552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071741-exon-scaffold_63-1575043694:686313..686810TCONS_00071741-exon-scaffold_63-1575043694:686313..686810Clytia hemisphaericaexon
TCONS_00071741-exon-scaffold_63-1575043694:685383..686021TCONS_00071741-exon-scaffold_63-1575043694:685383..686021Clytia hemisphaericaexon
TCONS_00071741-exon-scaffold_63-1510915933:686313..686810TCONS_00071741-exon-scaffold_63-1510915933:686313..686810Clytia hemisphaericaexon
TCONS_00071741-exon-scaffold_63-1510915933:685383..686021TCONS_00071741-exon-scaffold_63-1510915933:685383..686021Clytia hemisphaericaexon
TCONS_00071741-exon-scaffold_63-1491911889:686313..686810TCONS_00071741-exon-scaffold_63-1491911889:686313..686810Clytia hemisphaericaexon
TCONS_00071741-exon-scaffold_63-1491911889:685383..686021TCONS_00071741-exon-scaffold_63-1491911889:685383..686021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:685383..686810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.310482 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.063281	0	0.247514	0	0	0.310482	0	0.0737278	0.212928	0.279384	0.0800041	0	0	0	0	0	0	0	0.0788083	0	0	0	0	0.19897	0	0	0.0734969	0	0	0.235647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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