TCONS_00071738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071738
Unique NameTCONS_00071738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071738 ID=TCONS_00071738|Name=TCONS_00071738|organism=Clytia hemisphaerica|type=transcript|length=384bp
CCGGGTGATGACTCTGAAACGCACATTCCTAACATCCCTCAAATGCATTA
ACTGACTGGCTTTTTATATATCTAAACTTTCATACTTCTATATCTAGAAA
CCAAAACTActtataataaataaaaattattcaTATACACACACAACGCA
CTATGCAACCATGGCAATACACTGCATTGACACATCAATTCAACAAAATT
GAAGACAAATTATTACCTCCACAAACAGTTGCTCAACAACATACAAtaaa
tcaacaacaacaaactatTCAACAAGTTCAAATCGAGCAACAGAACTCCC
AACCTATggAAATGATGCATGAAAACAATGCAACAACAAAACGAAAATTT
ATGCATGAAAATGTAACTAATCTTTCAAAGGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_63:500563..501498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071738 ID=TCONS_00071738|Name=TCONS_00071738|organism=Clytia hemisphaerica|type=transcript|length=936bp|location=Sequence derived from alignment at scaffold_63:500563..501498- (Clytia hemisphaerica)
CCGGGTGATGACTCTGAAACGCACATTCCTAACATCCCTCAAATGCATTA
ACTGACTGGCTTTTTATATATCTAAACTTTCATACTTCTATATCTAGAAA
CCAAAACTACTTATAATAAATAAAAATTATTCATATACACACACAACGCA
CTATGCAACCATGGCAATACACTGCATTGACACATCAATTCAACAAAATT
GAAGACAAATTATTACCTCCACAAACAGTTGCTCAACAACATACAATAAA
TCAACAACAACAAACTATTCAACAAGTTCAAATCGAGCAACAGAACTCCC
AACCTATGTAAGTAATAGGGTGTTTTTGGAAATAGAGGTTGACGCTCAAA
ATTGACAGCGTCGTCCTCTTTAGCGGTATCTTCTTGGTTTGACGGTTTAG
AAAACTAAAAAGAGGTGAGAAAATATTTTTTCCTTGTGTTGTTGTTTTGG
AGACTGTGAAACGATATGGTTTCTTGGCGGGAAGCGGCTTGCTATTTTAC
TCGGCCTAGGCTCTTTGCCTCCGTGGAAAACTCAATATCCGCCTCCTTCT
TCTAAAACACCCTACACCCATTTTCACTATCCCATTTTTTTAATCGAACC
TAGTCGAACTTAAAGTGAACAATTAAATTTCCATCAAGCTCAGTTATCAT
ACTTGTATTTATATTTTACTTTAATTTCATTACTTCTATGTGCATTAATA
CAGAAAGTGTTAAAATGGTGTGGTTAGAAGTAAAGCTGACTCTCACTAAT
TCGAACTCGAGTGGGGAATCCTATTTCTTCGAATTATTGAGAAAGATTCG
AATAATAAAAGCTCGATTAAGCGAGAGTCTACTAGAGCAACGGATTTTAA
CATTTTTAGGGAAATGATGCATGAAAACAATGCAACAACAAAACGAAAAT
TTATGCATGAAAATGTAACTAATCTTTCAAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044550XLOC_044550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071738-exon-scaffold_63-1575043694:501192..501498TCONS_00071738-exon-scaffold_63-1575043694:501192..501498Clytia hemisphaericaexon
TCONS_00071738-exon-scaffold_63-1575043694:500563..500639TCONS_00071738-exon-scaffold_63-1575043694:500563..500639Clytia hemisphaericaexon
TCONS_00071738-exon-scaffold_63-1510915933:501192..501498TCONS_00071738-exon-scaffold_63-1510915933:501192..501498Clytia hemisphaericaexon
TCONS_00071738-exon-scaffold_63-1510915933:500563..500639TCONS_00071738-exon-scaffold_63-1510915933:500563..500639Clytia hemisphaericaexon
TCONS_00071738-exon-scaffold_63-1491911889:501192..501498TCONS_00071738-exon-scaffold_63-1491911889:501192..501498Clytia hemisphaericaexon
TCONS_00071738-exon-scaffold_63-1491911889:500563..500639TCONS_00071738-exon-scaffold_63-1491911889:500563..500639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:500563..501498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (4.87597 tpm) - - (102.379 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.379	94.6953	70.6987	60.1848	14.7632	13.8265	25.8035	38.3095	20.1587	22.0073	13.3505	22.5478	12.4043	16.5225	22.9082	31.2551	17.0451	18.5626	6.6807	10.148	9.80054	4.87597	42.7701	44.1674	9.35947	12.2383	16.123	13.3502	17.5511	14.9015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350Sequence
Match NameE-valueIdentityDescription
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