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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071736 ID=TCONS_00071736|Name=TCONS_00071736|organism=Clytia hemisphaerica|type=transcript|length=1760bpRun BLAST on NCBI protein sequence of TCONS_00071736-protein >TCONS_00071736-protein ID=TCONS_00071736-protein|Name=TCONS_00071736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp MSFIEVSAESHFPIQNLPYGIFSTPGSPKKRIGVAIGNYVLDLSEVKHLFRun BLAST on NCBI transcript from alignment at scaffold_63:342280..356248- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071736 ID=TCONS_00071736|Name=TCONS_00071736|organism=Clytia hemisphaerica|type=transcript|length=13969bp|location=Sequence derived from alignment at scaffold_63:342280..356248- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:342280..356248- >TCONS_00071736 ID=TCONS_00071736|Name=TCONS_00071736|organism=Clytia hemisphaerica|type=CDS|length=18855bp|location=Sequence derived from alignment at scaffold_63:342280..356248- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071736 vs. Swiss-Prot (Human)
Match: FAAA (Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2) HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0 Identity = 282/416 (67.79%), Postives = 333/416 (80.05%), Query Frame = 1
Query: 139 MSFIEVSAESHFPIQNLPYGIFSTPGSPKKRIGVAIGNYVLDLSEVKHLFNGSVMSTKQNVFDESTLNEFMSLGRPAWQETRATLQKILSKNEGVLRDDAGLREKALIPMESVTMHLPARIGDYTDFYSSRDHATNVGTMFRGKENALMPNWLHLPVGYHGRASSVIVSGTPVRRPNGQSRAPE-KPPAHGPCKALDFELEMAFFVGPANNLGDPIKVANAQENIFGFVIMNDWSARDFQKWEYVPLGPFTGKSFATTISPWVVTVDALMPHAIDNVEQNDPAPLPYLKHDDKFRFDVNLEVAIKSENASEAGVVSRSNLKYMYWTPKQQLAHHSITGCNMQPGDLMGSGTISGPEPESFGSMLELSWNRTKDVPIGNGETRKMILDGDEVIMSGYAQGNGYRVGFGQCAGKVLPA 1383
MSFI V+ +S FPI NLPYG+FST G P+ RIGVAIG+ +LDLS +KHLF G V+S Q+VF++ TLN FM LG+ AW+E R LQ +LS ++ LRDD LR+ A I S TMHLPA IGDYTDFYSSR HATNVG MFR KENALMPNWLHLPVGYHGRASSV+VSGTP+RRP GQ + + KPP +G CK LD ELEMAFFVGP N LG+PI ++ A E+IFG V+MNDWSARD QKWEYVPLGPF GKSF TT+SPWVV +DALMP A+ N +Q DP PLPYL HD+ + FD+NL V +K E S+A + +SN KYMYWT QQL HHS+ GCN++PGDL+ SGTISGPEPE+FGSMLELSW TK + +GNG+TRK +LDGDEVI++GY QG+GYR+GFGQCAGKVLPA
Sbjct: 1 MSFIPVAEDSDFPIHNLPYGVFSTRGDPRPRIGVAIGDQILDLSIIKHLFTGPVLSKHQDVFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRKCAFISQASATMHLPATIGDYTDFYSSRQHATNVGIMFRDKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMKPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTVSPWVVPMDALMPFAVPNPKQ-DPRPLPYLCHDEPYTFDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYCQGDGYRIGFGQCAGKVLPA 415 The following BLAST results are available for this feature:
BLAST of TCONS_00071736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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