TCONS_00071730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071730
Unique NameTCONS_00071730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071730 ID=TCONS_00071730|Name=TCONS_00071730|organism=Clytia hemisphaerica|type=transcript|length=564bp
GGGTCATGGACCAAGTAATTTAGTATGGGACGTGCCAAAGAACAAAGCCA
AACGTTTGACACATGTCAAGAAAGAGATTGAAGACGAAGAAGCTGATATC
TATTTCCCAATTGAAGGTGGAAAATTTGATGATAAGTACAGGAACATCTT
TTACTTTGTACCGGTTGTTGATTCTCCTGGAGTTGCTTTCCTTGTTCCTG
GAATCGAAGAGGGAGCATCTGCAATGGCCATCTTTGATTCTGTCTTGGAA
GGAAAACCGATTCTTATTTTGACTGTTGTCATGGCACTCTTAGCTGGTAT
TATTATGTGGATGTTGGATACTTACTGGAATGAAGAGCAATTCCCACGCA
AATTTGGTGAAGGTGTCGCTGAAGGCTTTTGGTGGGCTTTTGTTACTATG
ACAACTGTTGGTTATGGAGATATCGCACCCGTGGGTGTACCAGGGCGTTT
GTTCGCAGTTATTTGGATTCTAACTGGTTTGGTGATCATTGCCATTTTCA
CTGGTGTGATTACAACTTCATTGACCGTGGTCGCACTCTCCAGTAATGTC
AAATTATATGGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:309750..315789-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071730 ID=TCONS_00071730|Name=TCONS_00071730|organism=Clytia hemisphaerica|type=transcript|length=6040bp|location=Sequence derived from alignment at scaffold_63:309750..315789- (Clytia hemisphaerica)
GGGTCATGGACCAAGTAATTTAGTATGGGACGTGCCAAAGAACAAAGCCA
AACGTTTGACACATGTCAAGAAAGAGATTGAAGACGAAGAAGCTGATATC
TATTTCCCAATTGAAGGTGGAAAATTTGATGATAAGTACAGGTTTGTTAA
TGCTCGTGCTAGTTTTCTTCGGAAGTCTTATAATTCACTACTTTTGATTT
CTGCATGGGATCATTGCCAATTTTAGGGAATGTTTATTCATATGGGTACC
TGGGAAATGTAAATTTCTACTTTATACAATCTATTAATCCCAGGGTCGGT
CCCTCATCAGTCCCCAAAACTTGGGCCAAACCAAAAACCCAAACTTTTTC
ACCAGTTGACACTTGCATTGCTTTCTAATTCTTTATGTCAGGTATCTTTT
CATAGGAATTTTTTGCTTATTTATTTAGGAACATCTTTTACTTTGTACCG
GTTGTTGATTCTCCTGGAGTTGCTTTCCTTGTTCCTGGAATCGAAGAGGG
AGCATCTGCAATGGCCATCTTTGATTCTGTCTTGGAAGGAAAACCGATTC
TTATTTTGACTGTTGTCATGGCACTCTTAGCTGGTATTATTATGTGGATG
TTGGTAAGTTTCACCGGTTTCTTAACGAACTTTCCCTGATTTCTTTCCTC
ATTTTCTCGACCTTCTAAGGTTCTCAATTAGGATCAGTTTTCCGATTTTT
CTTAGCCGTTTTTTAGCTCAGTTTTCCCCGATATTTGTGCTTATTTTACA
CGATTTCTTTGCTCAGGCTCCCCAGTTTCTACTCGATAAGTAGTTGTCAA
TATTCTAAGGAACTTATAATCTTGATTTTTGAACGTGAAGTTTTTGGGTA
GATTCTCACTCACTCTTAGATAATTTTCCTAGGTGATGGTTCGTTTGTTT
CTGATACTTGAAAATGGATTTAAATCCTTGAAGTAAATATTGTGACCGGA
CGTCCGGTCGGGGAAACGTCCGTCGGGGAATTTTCCGTCGGGGAAAAGTC
TGTCATGGAAACGTCCGGTAATCCTAAATATTGTTAAGAATTTAAAAAGT
TAATGCTCTCTTTTTTTAGGATACTTACTGGAATGAAGAGCAATTCCCAC
GCAAATTTGGTGAAGGTGTCGCTGAAGGCTTTTGGTGGGCTTTTGTTACT
ATGACAACTGTTGGTTATGGAGATATCGCACCCGTGGGTGTACCAGGACG
TTTGTTCGCAGTTATTTGGATTCTAACTGGTTTGGTGATCATTGCCATTT
TCACTGGTGTGATTACAACTTCATTGACCGTGGTCGCACTCTCCAGTAAT
GTCAAATTATATGGTACTAAGGTTAGTGGTTTTCACTGTGTTTGATTTTC
TTGGTACCTGGATGTTACAATTGACTAATCAAAATAGAACGTTTAAAATT
GCTTGGTTTGTTTTAGAGGCAAAAACTGTGTTCCGAAAAAAAATGTTCCT
TGTAATTTCATTGCCAATCTCTCAAACGTCGACCACGCCGCTAGGTGAAT
TATAACCACTCTAAGCCAAACACTTTTTTGATATCCTATAGGTTGGAGCA
ATCAACAATACTAAAGAATACAGAATGGGTGTCATCAAAAATGCTGACAT
GGTTTGTAAGTATCAAATATAGTAATAGCAAAAGTCTTTTTGGGACAAAA
CACATCTCAGTTTATTCTTAAAAACTTCGGAAATCGTTGATTACTTAAAG
GGATTTTAAAATTTCGGAAGCTGTCCCTTTCTATAGATCTTTCACGAAAA
AACTAAAATCAGCCCGATGGCATGAAATCGAGATCTCTTGTTATTTTAGT
CAATTTTCTCAATTGCAGCTACTGCATCATTCGACGAACTCAGCCGCTCA
TTATCCAAACGTGATATCGAAGGTGCTCTCATTGACTCTTACGTAGCCGC
GTATCACCGTGATAAGTTCGGTAAATTCCGTGTCAACAACATCATTCAAG
CACCAAAAGCCTTTGGTATCGTCTTGGGGGCATCTCTTTCCACCAAAAGG
CTGTACACATCCTTCAAAGACTACTTGGAAAAAGAGAAAGCAGACATTGT
CAAAGACGTCGAAAGGAATACGGAGACGCTTACGGTAAGATGATCTGCGA
TCTAAAGAAATTGTACTACTCCGATGATTGTTTTCATGACCTAAAACTAT
TTGACTAAAGTGACATTAAAAGGACATAAAAGTACTGACGAAATTTGTGA
AAAAACCGTATGCAGCGGGAAACAAAATAGAAACAAATGTCACATGTCAA
AATAAAAACTCAAAACAAATATGGCTGATTTTGACACGTGGTTCACGCAA
TGTTTACGTTTTACTACTTTTATGTAACTTTAATCGATTGGAAGTTATCC
AACTCCTTTGATGTGGTCGACTTTAGTGGAGGATAAACTCAGCCTGCGCC
AACCTCTCTTTCTACAGATTGATTTCAAAGACCCAAAGGGGCTAGATCCG
AAATTTATTTCCCATCTAGGACACTGACCCGTGTGTTTTTTAAACAAAAA
TTCTAAATGCGGGGCAAACTTAAGGCTTCACTTTTTCCTGCTTGAGGTTC
AAACTCAATGTTTCTACACTTATTAACTTCTCTTCCATAAATATTTGTAC
TGGGCGACAAAAGAAGAAAATGAATATTCTCCTTATCCAACCGAAGGTCG
AAAAAGCCTTTAATTTCTAACTCATTCATTTACAGGAACCTGAACAAAGT
GCAGCTGAAGAAGCATCCAGTGATCTTTTCAATCCATCCAGCAAGATTTT
TGTCAATTCGGTGCTCGTGTCCTGTATTTTATTGGTGATCTTCAGTCTGT
TTGGTATTGGTTTCCAGTATTTGTATCTGGATCCTCGTAATCGGATGATC
GAAGCTGCCAAAAGTGAGTCTTTCTATCATAGGTTTGACAAAAAATATAC
CTCGGCACCCTTGAGCCGACACCGTCTAAACAACGTCAATTTACCATATG
TAAGTCAACAAATCCTGAGCCAGTCGGGAAGAGGACTTTACGAATGGTAT
TAAATATGAGTGGAGTGGAGTAGATTAATTACTGTCGAGGTTAAAAAAGA
GGTTAGATTTATGATTTCGGTTAAAAAGCTGTAAAACTGAACTTACTCGA
TTGCTTACAATTCGAACCATGTTTGACCCCTACTGCTTATTCTACCTAGC
CCATTCTAAAATGTATATAGTATAAGCAATGCTAAATTACATTTTTCATT
TAGACTTGGAAATGGTGGACTCTGTGGAGGTGAAACAGATGGCTGCGCAA
TCCAAAATGTTGAAAGAAGCTTTGTTATCTGAAGTGCGACAGTTCTATGC
TGTGTGGGGCGACCGACTTTCTGTGATAACTAAACGACATAAAGAAGAAC
AAAAAAAGCTACTCGCAAGAGGTTAGTGTGTAACATAGATTTNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCTTATTTATTTAG
GAACATCTTTTACTTTTTACCGGTTGTTGATTCTCCTGGAGTTGCTTTCC
TTGTTCCTGGAATCGAAGAGGGAGCATCTGCAATGGCCATCTTTGATTCT
GTCTTGGAAGGAAAACCGATTCTTATTTTGACTGTTGTCATGGCACTCTT
AGCTGGTATTATTATGTGGATGTTGGTAAGTTTCACCGGTTTCTTAACGA
ACTTTCCCTGATTTCTTTCCTCATTTTCTCGACCTTCTAAGGTTCTCAAT
TAGGATCAGTTTTCCGATTTTTCTTAGCCGTTTTTTAGCTCAGTTTTCCC
CGATATTTGTGCTTATTTTACACGATTTCTTTGCTCAGGCTCCCCAGTTT
CTACTCGATAAGTAGTTGTCAATATTCTAAGGAACTTATAATCTTGATTT
TTGAACGTGAAGTTTTTGGGTAGATTCTCACTCACTCTTAGATAATTTTC
CTAGGTGATGGTTCGTTTGTTTCTGATACATTAAAATGGATTTTAAATCC
TTGAAGTAAATATTGTGACCGGACGTCCGGTCGGGGAAACGTCCGTCGGG
GAATTGTCCGTCGGGGAAAAGTCTGTCATGGAAACGTCCGGTAATCCTAA
ATATTGTTAAGAATTTAAAAAGTTAATGCTCTCTTTTTTTAGGATACTTA
CTGGAATGAAGAGCAATTCCCACGCAAATTTGGTGAAGGTGTCGCTGAAG
GCTTTTGGTGGGCTTTTGTTACTATGACAACTGTTGGTTATGGAGATATC
GCACCCGTGGGTGTACCAGGGCGTTTGTTCGCAGTTATTTGGATTCTAAC
TGGTTTGGTGATCATTGCCATTTTCACTGGTGTGATTACAACTTCATTGA
CCGTGGTCGCACTCTCCAGTAATGTCAAATTATATGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044546XLOC_044546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071730-exon-scaffold_63-1575043694:315649..315789TCONS_00071730-exon-scaffold_63-1575043694:315649..315789Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1575043694:315187..315361TCONS_00071730-exon-scaffold_63-1575043694:315187..315361Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1575043694:309750..309997TCONS_00071730-exon-scaffold_63-1575043694:309750..309997Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1510915933:315649..315789TCONS_00071730-exon-scaffold_63-1510915933:315649..315789Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1510915933:315187..315361TCONS_00071730-exon-scaffold_63-1510915933:315187..315361Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1510915933:309750..309997TCONS_00071730-exon-scaffold_63-1510915933:309750..309997Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1491911889:315649..315789TCONS_00071730-exon-scaffold_63-1491911889:315649..315789Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1491911889:315187..315361TCONS_00071730-exon-scaffold_63-1491911889:315187..315361Clytia hemisphaericaexon
TCONS_00071730-exon-scaffold_63-1491911889:309750..309997TCONS_00071730-exon-scaffold_63-1491911889:309750..309997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:309750..315789 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (18.2728 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.030826	0.16508	0	0	0.556647	0	0.727174	0	1.94824	5.57709	3.63	1.86764	2.13755	0.748942	0.000279708	11.726	18.2728	6.5322	4.80428	1.88774	1.56329	0	0.128128	0.239697	0	0	0.0424418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550Sequence
Match NameE-valueIdentityDescription
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