TCONS_00071710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071710
Unique NameTCONS_00071710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071710 ID=TCONS_00071710|Name=TCONS_00071710|organism=Clytia hemisphaerica|type=transcript|length=920bp
ATAGTTTGGTCCTGGGTTTCTCAAGccTGTCTTCGCTTCCTGCTAACACG
ACGTTGCAATGTGAACACAACATTAACGAACGGTCTATCTACACTACACA
TCGCTGTCAGTAGCAAATGTCCTAACAAAGTGAGCTTGCTCTTACAACAC
GGTGCCAAGAGAAATCAGATCTACTATGGAGAGACCAGTACCATTACACC
TTTGGATGTTGCTCTAGAGAACGCTGACCACAAATGCATcaaattattac
aaaaatacGGAGCTCGTACAGCACACTATATTCTGACACAATCGGCCAAC
TTGATTCGGACCACGTGGAAGAATTATCACAAGCGTAAAGTGAATCGTGG
AGAAGCCGTCCCATTGGCTAATAGCAGTAGTATTTATACTTCTTCCAACG
CCAGTGAAAGCGTCAGTACTAAAGgtGTCTATCGCGACACAAGACAAGGT
AATCAAGAGGAATCGTCAATCACTTACGAAAACGAATCTTCGGAAATTAT
GACGTTGCAAGGAAAATCTACGACATCAAGTAATAAAGATTACCGATACG
TTGGTGAACTACCGAAGAAGGCGAGTTCCAGTTGTGTGGAAATTCCTGAT
TACATGTTAAGAGTTCTGACTGAAGAATACCAACGCGAATTTCaagagaa
aataaagaaaagtGATATGGAGATCATGTTAATGCGAGAATTAATGAAAG
AAACTGAACAACTTTTGGTTCGTGCAAAACGTTTGAATGAAGATGCAGAG
AATCTTGCCAACAGTCAAAGTTTCCGAAACATCAAAATGTCTAACAAGAA
ATATATGGAAGAAAAGAGGAAATTGTTCAACGCgaacaacaataataata
aaaatttaaccAGGTATGTCGTTGTGATATTaggaaaaaatctaagtttt
attGGGCACTTCCAGGGCAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:261158..264529-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071710 ID=TCONS_00071710|Name=TCONS_00071710|organism=Clytia hemisphaerica|type=transcript|length=3372bp|location=Sequence derived from alignment at scaffold_63:261158..264529- (Clytia hemisphaerica)
ATAGTTTGGTCCTGGGTTTCTCAAGGTCGGTGGTCCCGTTCTGATTTTTA
TAAGCGCACTAGCGATATCAAATTTCAACCAAATATTTTATTTTATTCTT
TAAAAGGAAAATACTCGCGGATACTTTCTAACCGTTTAAACTGCTTAGGT
TACTTTTAAGCAGTTTTAAGTGCATCGATTGCTTATATCATAGAGAATAT
AGAACAGAAGCAAGGAGAGGGGGCACTAGACTTTAGCGAGTAGTGAATGG
TAGCTGCGCCAGTCAATAGAAAGGTTCTCTTTCATTATAATTATTTTCTC
TTTTTAGCCTGTCTTCGCTTCCTGCTAACACGACGTTGCAATGTGAACAC
AACATTAACGAACGGTCTATCTACACTACACATCGCTGTCAGTAGCAAAT
GTCCTAACAAAGTGAGCTTGCTCTTACAACACGGTGCCAAGAGAAATCAG
ATCTACTATGGAGAGGTAATGTTATTGAATGTTTTGGCTGCATTTTAGTT
TATGATTATTGAGTGGGGGTTACTTTCCTAACATCCAGATTAGCAGAATT
TCCTTTTTACTTTTTTCACAATTTGATGGTTATAAATGCTTAACATTCGC
AGTTTAATAAAGTCACACTTTGCTAATTTAAAAAATCTCCGATTCTCGTT
ATTCAAAAGATTTCCTTGGATTCCCCTACTCTTAGGTGCGGTCTTTTTCT
CGGCATTCGTTATGTTAATGCAGTTAGCCTCGTATTTATTTAGCTTTTAC
ATTCCTCTTTTTATATAGACCAGTACCATTACACCTTTGGATGTTGCTCT
AGAGAACGCTGACCACAAATGCATCAAATTATTACAAAAATACGGAGCTC
GTACAGCACACTATATTCTGACACAATCGGCCAACTTGATTCGGACCACG
TGGAAGAATTATCACAAGCGTAAAGTGAATCGTGGAGAAGCCGTCCCATT
GGCTAATAGCAGTAGTATTTATACTTCTTCCAACGCCAGTGAAAGCGTCA
GTACTAAAGGTATTGTTAGCCCCTCTCAACTCTATTACTTAGAATAAGTA
GTTTATAGATGTTATTTTTCATGATATACCAGGATATACCGTTGTTTTTG
TATTGAAGATTCTCATTTCTGCCCTAAGATTCCTTTGCCACTTTTATAGC
GGGGGAAAAAAACAGGACTTTAAATAGTTGAAAAATAAGCTTCGAAAATT
TAGGCAGTTTTGTGGGTAAACACAAGATTTTCCGTACCTTTAGAAACAAA
CCCTTTTCAATCTCATGCCGGTTATCCCGGTGAAAATAGCAGAAAGACTC
CGGAAAAGTGACACGAATCTTAGTGCGGAAATGGGAATCTTATACAAAAC
GACGGTAGAAAGTAAGCGCGCCTCTCTGCTAACAAAGCAGAATAAACGAA
AGAATTTCTTAAAATGTGTGCTTGCGCGGCGCCAGAAGGAGAAAAAGTTG
TTAATTTTTTTTGTTTAAAAGTTCTGTGTTAGCAAATGGTAGGAGATAAC
TTTGAACGATGCCCTTTAATCGAACTTTACTGTAGAACCATTTCTTTTTT
AAAAATCGAAACAATTTTAGAAAATTTTCACGACGGAGCCAAAGATCTTG
AATTGAAATCTGCTAGGAGATAAATTGATTCTCCTCTAATGACTTTCGTT
TTCTATTGCGAAAGACTTTCGTAAATTACAACACCTGCTATGATTTGTCA
ATCACAACGGTAAATATTTTTGTAAATATTTTGGACAAACATTTCTTCTT
TTATCAATACGTGTAAAAATTTGTTACTTTAATCGGAGTTCACGAAATTT
CTCGTATTGATTTTTTGTGAATCAAAACTTTTAAAATATTTTGCGTTGAA
AATCTCGTGCGATTTCATGAGATTTATTTTTGCAAAAAGTCGGGAAAATC
AGGGCTCTAAATTCTCCTTCCGAAAATAGGAGGGCCTATTCCGTTCCTTC
GCCAACCGTGAACCCCCATATAAAAATGATAACAAAGAGCTCGTAACACG
ATGTAAAACCATTATCTAGATGAAACTATACATTTTAGCCGTATAACTTT
ACAAGCTTTTAAATTCTTAATTTTTTTCAGGTGTCTATCGCGACACAAGA
CAAGGTAATCAAGAGGAATCGTCAATCACTTACGAAAACGAATCTTCGGA
AATTATGACGTTGCAAGGAAAATCTACGACATCAAGTAATAAAGGTAATA
TTTCGGGTTACGGGAAAGGGGTCAACCGAAAGCTAGATATGAACCTGTAA
CCTTTCCCAAGCAAGCAAAAGTGTTGCCTTAAAATTTGAGCCGCATTTCG
GATGTTGGATTGAACCCAGCNTTTCCCAAGCAAGCAAAAGTGTTGCCTTA
AAATTTGAGCCGCATTTCGGATGATGGATTGAACCCAGCGCTTTCTTTAT
TTGTTTTTTTTTCTCTCCAGTTTTTCAGTTTTTCAGTTCCACATTTTTTT
TGAATTCTTGCAGTAGATTTTACTTTCGACCCAGAGTTTGTATGAAAGCA
CATGGGCTGGTGCAACTTATATTGGCCGCTTTAATCCTTGGATACAGAAT
AATTATTTGTGGAAATTACCCTCACTTACATCAGTTTAATTTCAATTCTT
GAACATTTTTGCATGGATTCAATTTCGCGGGTCATGAAAAATCGCGGTCA
TGTGGAAATTTAGCCTAAAGAATTTATATTTATTTTTCTATTTGTGCAGA
TTACCGATACGTTGGTGAACTACCGAAGAAGGCGAGTTCCAGTTGTGTGG
AAATTCCTGATTACATGTTAAGAGTTCTGACTGAAGAATACCAACGCGAA
TTTCAAGAGAAAATAAAGAAAAGTGTACGTAGAATTTTTCATATTCTTTT
GCGATAAAAATCAACGTAAATTTTCATACAAATTTCTAATGAGAGCCTTT
TCCTTGGATAAAACTTTTAGCAAGCGTAGGTAAAATAATTTCCCGGGGAG
TCATTCGGGCGAACTCAGGTACGACAAGGAAGATGCTTTATTTTCTTGAT
TTAGCCACTTTGCCGAGATTTTTTTCACCCATTTTTTACATTGCCATTAC
AAAGATTCGTATTTTATAAACCTTAGCATATGAATTAACTTTTAAATATT
TCTTTTATATAATAGGATATGGAGATCATGTTAATGCGAGAATTAATGAA
AGAAACTGAACAACTTTTGGTTCGTGCAAAACGTTTGAATGAAGATGCAG
AGAATCTTGCCAACAGTCAAAGTTTCCGAAACATCAAAATGTCTAACAAG
AAATATATGGAAGAAAAGAGGAAATTGTTCAACGCGAACAACAATAATAA
TAAAAATTTAACCAGGTATGTCGTTGTGATATTAGGAAAAAATCTAAGTT
TTATTGGGCACTTCCAGGGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044545XLOC_044545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071710-exon-scaffold_63-1575043694:264505..264529TCONS_00071710-exon-scaffold_63-1575043694:264505..264529Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1575043694:264065..264222TCONS_00071710-exon-scaffold_63-1575043694:264065..264222Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1575043694:263521..263761TCONS_00071710-exon-scaffold_63-1575043694:263521..263761Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1575043694:262336..262449TCONS_00071710-exon-scaffold_63-1575043694:262336..262449Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1575043694:261706..261830TCONS_00071710-exon-scaffold_63-1575043694:261706..261830Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1575043694:261158..261414TCONS_00071710-exon-scaffold_63-1575043694:261158..261414Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:264505..264529TCONS_00071710-exon-scaffold_63-1510915933:264505..264529Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:264065..264222TCONS_00071710-exon-scaffold_63-1510915933:264065..264222Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:263521..263761TCONS_00071710-exon-scaffold_63-1510915933:263521..263761Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:262336..262449TCONS_00071710-exon-scaffold_63-1510915933:262336..262449Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:261706..261830TCONS_00071710-exon-scaffold_63-1510915933:261706..261830Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1510915933:261158..261414TCONS_00071710-exon-scaffold_63-1510915933:261158..261414Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:264505..264529TCONS_00071710-exon-scaffold_63-1491911889:264505..264529Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:264065..264222TCONS_00071710-exon-scaffold_63-1491911889:264065..264222Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:263521..263761TCONS_00071710-exon-scaffold_63-1491911889:263521..263761Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:262336..262449TCONS_00071710-exon-scaffold_63-1491911889:262336..262449Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:261706..261830TCONS_00071710-exon-scaffold_63-1491911889:261706..261830Clytia hemisphaericaexon
TCONS_00071710-exon-scaffold_63-1491911889:261158..261414TCONS_00071710-exon-scaffold_63-1491911889:261158..261414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:261158..264529 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03521	1.65176	1.57067	1.50387	1.80798	1.10965	5.98068e-06	4.39629	0.955878	1.2043	0	1.56715	2.63324	0.54032	1.91016	1.99551	1.15343	3.90481	1.46675	1.54241	4.26914	3.00549	2.27244	1.46102	2.33914	2.56963	3.43051	2.25833	1.5779	2.39306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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