TCONS_00071700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071700
Unique NameTCONS_00071700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071700 ID=TCONS_00071700|Name=TCONS_00071700|organism=Clytia hemisphaerica|type=transcript|length=500bp
AAAAAGGATGACCCATGGTATGGCCTGAACTTTTCAGGCAACAATGACAA
TAACTTGAAAGTTATGCACAAAAGATGGAAAAACATTGCAAATACAGAAC
TAACAAAAACAAGATAATTATATTTGATATGAGCTGATAGTACATTGAAA
CAAAAAGTATATTATGGAGAACGATTATGCGGAAAAGAGGCTTCGTGCCT
TGGAAAGGCTATATCTTTCACCTAACAATATCCCTAGAGAAATGTTCAGT
GCTGAAACCTTACTGGATATTCTCATTGTTTTGTATGACGAATGTAACAC
AACTGTCATGAAGAGGGATAAACGTGTTGTTGACTTTCTGGAAGTTGCTA
AACCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTT
GAAACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGT
CATCAACCTTTTGAGGATCTATATATCAAGATCAGATATATAGTGGTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_63:1240440..1243549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071700 ID=TCONS_00071700|Name=TCONS_00071700|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at scaffold_63:1240440..1243549+ (Clytia hemisphaerica)
AAAAAGGATGACCCATGGTATGGCCTGAACTTTTCAGGTAATGTTTATGC
CAAAATAGCTAAAAAGATTTCTGccacaaaattttgaatttttgcatAGG
TCATCATGTTAAGAGACTatttcaatttcacaattgTCAAGTGGCCTTAA
AAATTTCTGTCCTTACcatggttggatttagttggaaaatatgcaaaaca
tataccgtgagattgagTAAttcttgcatcagtggaggctaacatacata
gccctcaaatgaaaaacctggctggtcattaaaatacaaagttaaatcaa
aacaaaatggtagagtagagctgcgaccggagctgcgtagttgtatttta
atgaccagacaggtcattcatttgagggctatgcatgttagcctccactg
atgcaagttacccaatctcaggGTAGAACTTTACACACTCAGATTATAAA
GACAACAAAGGATTTTTTAAATGTTATACTCGTTTTTGTATAACAATAAA
ATATGGAATTTTATACCTccatctaattctgacacccctCAAATTTTTAC
CTCAATTGCTGTATAAACATATTGATCATATATTTTTAAAGCACAAACGA
GATATTATTTCtgtagatcagattcttttaataaagacAATGTTTTTCTC
GTACTATTTTTTACAatcgatgtttgtttatctttgttgaCTAGCACTAT
TGTTAAATATGTCTGTAAAATATATAGGCTGAACAATAAATGAAAACTAC
CAATATCAAGGGGATTCTCTGACTGGTAGAGagaaagaaatcatttttaa
tcagtgattctgacATTTCTATTACAGTCTGACAGTTTACTGCTAGTTAT
TCTAAGTTCCACAGAGGATAAGAATTTACTACAAGTGGCTAGAAATTTGT
TTTCCTGTCAGATTTAAACTTAACCTTAATGTTTTAAATATGAAAGTGTT
ATGATCACAGAAAGTCAATGTTCTCACTGGACTACTGTACATCTCAATAA
GACTTGAATAACTGAGAGTGATTTAGGCTATAATTGACCCCAAGAAGAAT
AGAAATCGCTTTGAATAACTGAAGTTTTGAATAACTAAGAGTGTTTTTGC
CTGAGTTGGGTTAGAAGATCCAAGAGGGTCGCCATCTCACTTCAAATAAT
TGAATTATTCCAATCAGTACAGGTTCAAATAACAGGGAGTCCATTGTAAA
TATCTTTAAAGACTGGTGTTGAAATTAGATGAGGGGTGTCGACAAAAGAA
CATTTCACGgtatataattcaaaaagaaagaacTGTACCTTATAATGCTG
ATATACCTTGTATGATTCCGTCATAGCATCTATCTATATGGTCTTTTAAT
GTTTATTAATGAAAACTAAGtaagctgtttaaaaaaatcactgtAACCAC
TTTGCTAGAGATGGATATAAAGACTTTCCTTTTCAAGCAAGAAAATATTA
GAACCCTCGTTTTGATATACAAGAATCAGCGCAACAAGTTAATTTATAAA
TAAGTATTTAGCTGCTATCAATTAGGGGGTTCAGAtctatgttttgattt
gaaatatgATGTCACTTTGCAGGGATATTCCCAAGAGAATATAATCTACC
ATCAGAATTATAAGAAGTCTGACTGTGCCAGGTATTGATTCCATAATATC
ATCATGCATTATTACTTGTAAGTAAAAGTGTAAAATGTAGTATATTTTTA
GCTTGTAATTTTTGGTAGAGATCCTCAACTTAATGATTTTCTAGACCTCT
TTTAAGCTCCATTGAAGAAATCTtgtggtattttttattttttaggttGG
TTAGAGTTTGTAAAAGTACAGTAACATACTTTTAGTCGTTACTTCATGTA
TGTAGTTATAaagaataaagaataaaaagcaTAAAATCATTCTAGCCATT
TGGAATATAGGCATTGGGTAACCTGGGGAATATCCTTAAGTAATCACTTT
CAAGCAGTAAGCAAGAGACATTTACATCTAGAAACCATAGATTGATCAAA
AGTTTGTCTGCTTGCATAAGTTTTCTATATTCATTAGAATACTAACTTTT
ACAGCTTGTAAATGCTAAATGGCAAAGCTAAACCCAAATTTACTAATGGT
TAACATCAATTTATCTACTTCCtccttttaatttgaaaaattataaatgA
ATTGTTAGCATCATTATGCAACCGTCTCTGGATGTTTTTTGTTGTCAAGT
TGTATTCATTTTAGTGAATGAATTTATCCTTGTTATGATTtgatttaaaa
tattgatgCATCTCTATTTACCAGGCAACAATGACAATAACTTGAAAGTT
ATGCACAAAAGATGGAAAAACATTGCAAATACAGAACTAACAAAAACAAG
ATAATTATATTTGATATGAGCTGATAGTACATTGAAACAAAAAGTATATT
ATGGAGAACGATTATGCGGAAAAGAGGCTTCGTGCCTTGGAAAGGCTATA
TCTTTCACCTAACAATATCCCTAGAGAAATGTTCAGTGCTGAAACCTTAC
TGGATATTCTCATTGTTTTGTATGACGAATGTAACACAACTGTCATGAAG
AGGGATAAACGTGTTGTTGACTTTCTGGAAGTTGGTAAATGAATTTTATT
GTAATATGCTCAAATGTCATTGAAACAATATGTGTTAATTTACAATATCC
TGTAACTTTTGGATAGTGATGCTTTCATATTGATACTGANTTGTAATATG
CTCAAATGTCATTGAAACAATATGTGTTAATTTACAATATCCTGTAACTT
TTGGATAGTGATGCTTTCATATTGATACTGACTTGCTAACATATTCCCAT
AGGAAGGAAAAATCCCCTTTGATATTGCTATTTAAAAATTTCTCCTCCAG
TCACCATAATAAATATCCATACTGTCACATTTTATAACTACATTTGAATT
TTAGCTAANTAATAAATATCCATACTGTCACATTTTATAACTACATTTGA
ATTTTAGCTAAACCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACG
TGAGGACTTTGAAACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGG
TAAGATTTGTCATCAACCTTTTGAGGATCTATATATCAAGATCAGATATA
TAGTGGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044538XLOC_044538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071700-exon-scaffold_63-1491911889:1240440..1240476TCONS_00071700-exon-scaffold_63-1491911889:1240440..1240476Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1510915933:1240440..1240476TCONS_00071700-exon-scaffold_63-1510915933:1240440..1240476Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1575043694:1240440..1240476TCONS_00071700-exon-scaffold_63-1575043694:1240440..1240476Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1491911889:1242714..1243023TCONS_00071700-exon-scaffold_63-1491911889:1242714..1243023Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1510915933:1242714..1243023TCONS_00071700-exon-scaffold_63-1510915933:1242714..1243023Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1575043694:1242714..1243023TCONS_00071700-exon-scaffold_63-1575043694:1242714..1243023Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1491911889:1243397..1243549TCONS_00071700-exon-scaffold_63-1491911889:1243397..1243549Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1510915933:1243397..1243549TCONS_00071700-exon-scaffold_63-1510915933:1243397..1243549Clytia hemisphaericaexon
TCONS_00071700-exon-scaffold_63-1575043694:1243397..1243549TCONS_00071700-exon-scaffold_63-1575043694:1243397..1243549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1240440..1243549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	4.99329	0.847962	0.484594	0.00311482	7.32139	7.33041	18.403	21.611	28.962	20.6275	19.21	19.4329	18.7927	20.1862	21.9588	14.4953	23.816	16.7369	22.3867	14.6384	5.61091	2.18011	10.3015	0.00179005	8.31997	7.77841	8.89942	11.4763	12.6752
Blast
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BLAST of TCONS_00071700 vs. Swiss-Prot (Human)
Match: MRCKA (Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens GN=CDC42BPA PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.320e-25
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 2 
Query:  179 AEKRLRALERLYLS-PNNIPREMFSAETLLDILIVLYDECNTTVMKRDKRVVDFLEVAKPVATRVKNLRLKREDFETLNVIGRGAFGEVRFV 451
             E RLR LE+  L  P     + FS ETLLDILI LYDECN + ++R+K ++++LE AKP  ++VK +RL REDFE L VIGRGAFGEV  V
Sbjct:    3 GEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVV 94
The following BLAST results are available for this feature:
BLAST of TCONS_00071700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRCKA7.320e-2556.52Serine/threonine-protein kinase MRCK alpha OS=Homo... [more]
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