TCONS_00071696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071696
Unique NameTCONS_00071696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071696 ID=TCONS_00071696|Name=TCONS_00071696|organism=Clytia hemisphaerica|type=transcript|length=2038bp
TTAAAAGTCTGAACTTTATTAAACTAGTAACTTCAGTACAAGTGGTTGTA
ttacaataaattaaattttgtgaactcataagtaaaagaaaatctgaaat
ctATTAAAATAGTAATTTCATAAGAAATAGAGTTAAACTGTCACCAGTAA
AACTACGTAAACTGGTGACAAAACTCTTGTAGTGTATTCGTGTTCGTAAA
ATATTGGAATGCAAGATgacatttcaacttttaaaacaCATTTTTCGGAT
AGTATGGTTTCTAGCTATAGTTGACTTGTCAAAAGTTGTAGCTACCAATC
ATACGGCTAAAACTCAAAGTGACCTTTACGACAAATTATTTGGAGAATCG
TCAAATTATCGATCGGAAGTCAGGGCGTTACCTTTAAATGGAAGAAACAA
ATTAGATGTTACGTTTGATATCAGTATTCGAACTATCTTGGGATTGGATG
TTAAAACTCAAATATTTTATCTAACAGCTGTTATCCATATGAGATGGCAA
GACAAACGACTGACTTGGAACGAAAGTGAATTTGATGGTATCGATACTTT
AAACGTTGGAAATTCTGTTGTCTGGACTCCTGATATCATGCTATTAAACG
AGATTAGTGACGAACCATTTTCACACACAGATGTCTATCGCTCCAAAGTG
TTCTTTAACAATGATGGCACAGTAATATGGACGAACCCGGTGACTTTCAA
ATCCACGTGTCAAGTTGATGTCACGTGGTTCCCTGTTGATTATCAAGTTT
GTAATTTAACATTTGGCTCATGGTCGTATGGCCGTAATAAAATGgatatc
aaattcaaaaacaaggaaaaagacaaagaaatggTCTATTCAGATTTCCA
CATCCCAAGCGGTGAATGGTCTTTGGAAGGAGTTGCAtttttcgaagaag
aaaaaacattcgattgttgCAAGCAGACATTCTCAGTCGTCACGtttcaa
gttttcttaaaaagataTCCCAATTTCTATTACATCTACGTTTTTCTCCC
CTTCATCTCACAAATGATACTATTCCTTTTGATTTTCCATATCCATCCTG
ACCAAGGAGATCGTTTGGGTTATGGAGTTGCCCTGTTGTTAAATATGACT
ATGTACATGATCTTCCTATCTGATCATCTTCCAGAGAAATCAGACAGCAC
TCCATTTGTTGGTGCTGTATTCGTCACATTCTTCTTCCTACTCTCCATTG
CATTAGCTTTATCAGCATTGACGATGCATTACTCACTCCGGGAAACACCA
TTACCAAGCCATGTTCACAACCTAAAGGTACTGGTCAATAAACTTTGGCC
CTGTAAAAACAATGACCCTGGAAAATCGAACGTCAGACCTGAGTCGAAAT
CGTACGGTTCCTATGATATGGAGGAAGTTAAGCAAACATCTACTGATGTT
GATCCAAATTTGGATAATCAAGATCAAGAAGAACCAATAGCAACCAGATC
TGAAGAATCTAGTTTGGTCGAAAAGCCCGGTGACCGAAATCGTTTTAAAG
GATGGTTCGAATTCATGAGATTAGTGGAGAAAATATTGACAtgtgttttt
gcttttttgctCATTGTTTTACCATTGATTATTGGTTCTCTAGTCACTGA
GCGCATCACCGAGGTTTGATAATTGAATCATGAGACACGTTGAGGATAGG
TTTAACAACCATTATAACTGTCTGCTAAACTCCATTACTGGCGATGACCA
AAGAACACCGTTATCAATCAATTGTTTGAAtataatgttttgaaatttag
gaCAATTTATTTAGTATATTTCTTAAAACATACTTGTATACAAGTCTAGA
AAATAGTCTCCATTGTTCAAAAAGTCACATGgtaaatttattgaaaatct
tCTACACTACAcactatttttataagaataatgtaaatccatttcatcat
cttttttgggaaaatcatcctaaaatattcttacagcattcttagggtag
gatcctaattcagactagattaaACAATTAGTAggtacgtctcaagcata
acaTGGCATTTTGTGAagggagtgagccttactttggg
Run BLAST on NCBI

transcript from alignment at scaffold_63:1184788..1191419+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071696 ID=TCONS_00071696|Name=TCONS_00071696|organism=Clytia hemisphaerica|type=transcript|length=6632bp|location=Sequence derived from alignment at scaffold_63:1184788..1191419+ (Clytia hemisphaerica)
TTAAAAGTCTGAACTTTATTAAACTAGTAACTTCAGTACAAGTGGTTGTA
ttacaataaattaaattttgtgaactcataagtaaaagaaaatctgaaat
ctATTAAAATAGTAATTTCATAAGAAATAGAGTTAAACTGTCACCAGTAA
AACTACGTAAACTGGTGACAAAACTCTTGTAGTGTATTCGTGTTCGTAAA
ATATTGGAATGCAAGATgacatttcaacttttaaaacaCATTTTTCGGAT
AGTATGGTTTCTAGCTATAGTTGACTTGTCAAAAGTTGTAGCTACCAATC
ATACGGCTAAAAGTAAGTAAATATTACTGACTATTTTCTACGTTTGAGTG
CGACATGAGATAAGCTAATAGACATAATATAATAACgatgtgaaagaaaa
acaaaattttgtagaATAGGTTGTTTAGAAGATCTTGCCCACTGCTATAA
AATTGATATGAAATATTGTATCAAGCACCTCAAATTCGGTCTTACCCTTT
CGCGGGGGGGgggttcacttttacggtatgacggtattgggcccttttac
ccccggtaaatcggtattacgagaaaaaaacgacgggattacggtatttc
attttctaccggtttcggtaaattgcctgttttttttgttggtatttcga
tatttttatcaataaaaaacggtatttcggtataaaactatttacctttt
agtttcttcatgagtttcatgcagaaaaattttcaaaaaagataNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtgtaaaagaggccttaaaaagtggacgatatcgag
aataaggtcacaaaactagcaaaaaactttattggcgaaaatgtttggta
taagaatggGACAAGCTgcagtttttacaagctctcgtttgatttggttg
gtggttaacctgtaataaaacaattttgttactttttctaaagaacgcgt
catctctattacttcaaataaccaattagtgaagtctcttgtaaaaactc
cagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccgaa
aaaaaaacttacgaTTTTGGACACAGGGTTAGGTGATTTTTCATTCTTCA
CTGTTTCTCTAGCTCAAAGTGACCTTTACGACAAATTATTTGGAGAATCG
TCAAATTATCGATCGGAAGTCAGGGCGTTACCTTTAAATGGAAGAAACAA
ATTAGATGTTACGTTTGATATCAGTATTCGAACTATCTTGGGATTGGTAA
GTTTGAAGTTAAACAAATGACTACATTCGAATCCCTACAATTCGATTTTT
TATAGGGATCATTCATTTCTCCGAATAAgacatccctgtgtcacagaccc
actgggaccccatccccactggaaaatttggcaaaatttggtccccggtg
ggaaaatacccgagaatttcagccccactgagaaacTGATTTTGATTTCG
TCCCCACTCGAAAATTAAtgtctaaaaattgcactccaaaactatcccca
ctgagaattttttaaccttggaaaaataaaatctttatccccattgggat
ttcaataaggATGTAATAAGGGGTGTAATAAAAGAAGGATTTGAATATTA
AAGGTTCGAATTTTAGGAAATTGACCTAGGATTAAATTGCAAGATATTGT
TTATATATGTTTATATAAgtagaatttattttattttcttaactttCCAG
GATGTTAAAACTCAAATATTTTATCTAACAGCTGTTATCCATATGGTAAG
TTCacttaatttttcatctggcACCCCAGAtgctgaaattttcatccaac
atgctAAAGCTTTGAAAGTCGGGAAAGTTTTCTACacctggaaggtttag
attacggaatttttcTTGACCATGTCAAGGATTTTACAGAGGGAGGCCTA
GACTCCAGCCCTctttttcggggattggcgggtccaaccgaattACTTTT
AGGATGGCGTGGATAGGAATAAGATAGCCTAAATGTAAGTGTGTCCTGAA
CTATAAATCGACGTTCTAATTCGGTACGCTCCGCTATTCGATATATTGTA
AGTCTCTGTCATCTACAAACTctcagcgaccgtagtgcagtggtagagca
tccggctacggtgcgcaaggttgtgggttcaacccccagccgggtcatac
caaagattcccaaaatggtacttgatgcctctctgctagatgctcagcaa
ttaagagaaggatcaagggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaagagtggcgccct
cccctaccttcgggtagacagctatcgaaagaggagccttcgggtcgcct
ccgactgcggtcgcagacttacttacttacaaaCTCTCATAAACCACGCT
CTCCAATTCGATACACTCCCTTATTtgccttattcgatgaaaattcaatt
tcccttaaaaatcgaattcgagagcgtcaactgtacattATATTAATCAG
AGATGGCAAGACAAACGACTGACTTGGAACGAAAGTGAATTTGATGGTAT
CGATACTTTAAACGTTGGAAATTCTGTTGTCTGGACTCCTGATATCATGC
TATTAAACGAGTaaggaagaaatatttttttaactgaGTGAACCAAATTT
TTACTGGAGATTATATGAAACTTTAACAGTTTTAAAAACCGACTTTTCAT
TTGATATTCTTTCATGTTGATGAAAGTGGAGAGGGCTTCCGAGGGTACAA
ACTATCGGAATACCAATAATCTTTATAAATACTGACATGCCGGCCGAAAA
TTGTTCCAATTCTGGTCAAAAATTATGAATTCTGAAATACCTGAAATCCC
ACCTTTCAATGTTGGAATATTGGTAATTTTCCCGTCAAAAACCGGAATAT
TAGTCATACTGGATTTGTGAAAGTCTTCTCCCAACATGAGTTTTATCTAC
ACAGTTATATCAATATTCTGAGAAAGTTTTCTTGCCTCAAAACACTAAAT
GAGGGAAACGAAGGGAGAGGGCCAATACCAAGGCAATGTACCATAAAGTT
TATCAAACATTGTAGCTACCAAGGATCTTTTTacatgaaaaatatatcac
gTTCAATTCAGGATTAGTGACGAACCATTTTCACACACAGATGTCTATCG
CTCCAAAGTGTTCTTTAACAATGATGGCACAGTAATATGGACGAACCCGG
TGACTTTCAAATCCACGTGTCAAGTTGATGTCACGTGGTTCCCTGTTGAT
TATCAAGTAatgattttttcactaaattCGTATTTTTGTTAGAGTCTTTT
GAAACCTTGAAGTCTTGACAAAGATGTTGGTACTCTTTCAAGATACCTTG
TTACGGACTTCGGAGCTCCAAAGTGAATCAACAACCCAAAGGGCtaaatg
tcgtgctttaagccatcgcaggtaaaaaaaagtgaatatcgcaaaaaaga
TATTGCTgccattgttttcgaaaatctgcaAATTTTCTGactggtcaagc
gctgaaaatCTATTATAATGTCaagtgacctaggtaggatttcctaccta
accatgacatacttttcagcaaaagcacgatatctagcccttcgggtttt
ataaatctatggtcctAACAGCGTGGTAGACTGTAAACCAATTAATACTT
TTCTTTTATAGCTAAGGTTGTGTATGTTTTTCAAACGAAAGCCTGATTAT
CAAATATATCTCTATTATATAACCTTAGGTTTGTAATTTAACATTTGGCT
CATGGTCGTATGGCCGTAATAAAATGgatatcaaattcaaaaacaaggaa
aaagacaaagaaatggTCTATTCAGGTAAATGTTCTCTGAACGTTGATAA
GAAGAACCCACCGCTGGAAGCCGAAAATTGGCGCATTATTAGTGATTGCC
CATTAAAATCAATCTACAGAGATCAAATACAATCTATATAATAGACCTTA
CGAACATCATTTGcgtcgttttgaaattattgcggTAATTAATTCCCAGC
GTATTTTATCTATTCATAaaaatgtctcaagagacataatctAAATCAGC
ATGGTAATTTGTTTAAATACGATGCaagtgaaaaggtctattgttgtCTA
ATTATTAATTCTTTGGCGAGGTACCTAATAAACGGGCTCCTCGTTTGATG
ATTTGTCCATCATTCCCCCAACCAAAACTTATAAGGAGCCCTATTTATTG
ACTGTTCCATTTAATTATTATGACCTAATCATTCGATTTCTATTGTACTA
TCGTTTTTGGTTAAAATTAAGATTCCAATTACTGAAGTAAGGTTCTACTA
GCGAAAAAAGACCAGGATGAACTCCAGATATTGAAAAATGAGCTCTTTCT
CTTCACTAAATACAAGCTACTTTCCACCTCTAGAAAAAACAACAGTCGGA
TAATTCATACATGATCCTATCGACTACACAAGGTCACTAGAGAAAAATTC
ACAGTTAGGTAAATGATTCCACCATTTTCACCCATAGATTTCCACATCCC
AAGCGGTGAATGGTCTTTGGAAGGAGTTGCAtttttcgaagaagaaaaaa
cattcgattgttgCAAGCAGACATTCTCAGTCGTCACGtttcaagttttc
ttaaaaagataTCCCAATTTCTATTACATCTACGTTTTTCTCCCCTTCAT
CTCACAAATGATACTATTCCTTTTGATTTTCCATATCCATCCTGACCAAG
GAGATCGTTTGGGTTATGGAGTTGCCCTGTTGTTAAATATGACTATGTAC
ATGATCTTCCTATCTGATCATCTTCCAGAGAAATCAGACAGCACTCCATT
TGTTGGTGCTGTATTCGTCACATTCTTCTTCCTACTCTCCATTGCATTAG
CTTTATCAGCATTGACGATGCATTACTCACTCCGGGAAACACCATTACCA
AGCCATGTTCACAACCTAAAGGTACTGGTCAATAAACTTTGGCCCTGTAA
AAACAATGACCCTGGAAAATCGAACGTCAGACCTGAGTCGAAATCGTACG
GTTCCTATGATATGGAGGAAGTTAAGCAAACATCTACTGATGTTGATCCA
AATTTGGATAATCAAGATCAAGAAGAACCAATAGCAACCAGATCTGAAGA
ATCTAGTTTGGTCGAAAAGCCCGGTGACCGAAATCGTTTTAAAGGATGGT
TCGAATTCATGAGATTAGTGGAGAAAATATTGACAtgtgtttttgctttt
ttgctCATTGTTTTACCATTGATTATTGGTTCTCTAGTCACTGAGCGCAT
CACCGAGGTTTGATAATTGAATCATGAGACACGTTGAGGATAGGTTTAAC
AACCATTATAACTGTCTGCTAAACTCCATTACTGGCGATGACCAAAGAAC
ACCGTTATCAATCAATTGTTTGAAtataatgttttgaaatttaggaCAAT
TTATTTAGTATATTTCTTAAAACATACTTGTATACAAGTCTAGAAAATAG
TCTCCATTGTTCAAAAAGTCACATGgtaaatttattgaaaatcttCTACA
CTACAcactatttttataagaataatgtaaatccatttcatcatcttttt
tgggaaaatcatcctaaaatattcttacagcattcttagggtaggatcct
aattcagactagattaaACAATTAGTAggtacgtctcaagcataacaTGG
CATTTTGTGAagggagtgagccttactttggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044535XLOC_044535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071696-exon-scaffold_63-1491911889:1184788..1185099TCONS_00071696-exon-scaffold_63-1491911889:1184788..1185099Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1184788..1185099TCONS_00071696-exon-scaffold_63-1510915933:1184788..1185099Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1184788..1185099TCONS_00071696-exon-scaffold_63-1575043694:1184788..1185099Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1186850..1186983TCONS_00071696-exon-scaffold_63-1491911889:1186850..1186983Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1186850..1186983TCONS_00071696-exon-scaffold_63-1510915933:1186850..1186983Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1186850..1186983TCONS_00071696-exon-scaffold_63-1575043694:1186850..1186983Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1187438..1187482TCONS_00071696-exon-scaffold_63-1491911889:1187438..1187482Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1187438..1187482TCONS_00071696-exon-scaffold_63-1510915933:1187438..1187482Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1187438..1187482TCONS_00071696-exon-scaffold_63-1575043694:1187438..1187482Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1188238..1188347TCONS_00071696-exon-scaffold_63-1491911889:1188238..1188347Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1188238..1188347TCONS_00071696-exon-scaffold_63-1510915933:1188238..1188347Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1188238..1188347TCONS_00071696-exon-scaffold_63-1575043694:1188238..1188347Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1188849..1188993TCONS_00071696-exon-scaffold_63-1491911889:1188849..1188993Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1188849..1188993TCONS_00071696-exon-scaffold_63-1510915933:1188849..1188993Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1188849..1188993TCONS_00071696-exon-scaffold_63-1575043694:1188849..1188993Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1189466..1189562TCONS_00071696-exon-scaffold_63-1491911889:1189466..1189562Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1189466..1189562TCONS_00071696-exon-scaffold_63-1510915933:1189466..1189562Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1189466..1189562TCONS_00071696-exon-scaffold_63-1575043694:1189466..1189562Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1491911889:1190225..1191419TCONS_00071696-exon-scaffold_63-1491911889:1190225..1191419Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1510915933:1190225..1191419TCONS_00071696-exon-scaffold_63-1510915933:1190225..1191419Clytia hemisphaericaexon
TCONS_00071696-exon-scaffold_63-1575043694:1190225..1191419TCONS_00071696-exon-scaffold_63-1575043694:1190225..1191419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1184788..1191419 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (15.3902 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.726598	0.573682	0.267583	0.222711	0	0	0.0748273	0.0739679	0.0329217	0	0	0	0	0	0.0350244	0.0592959	15.3902	12.0597	0	0.116658	8.0685	7.33338	6.46789	7.79197	7.62234	7.3657	10.2024	5.67401	0.152719	0.110963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 1.75e-50 / Id = 29.59SequenceACHA7
Match NameE-valueIdentityDescription
ACHA71.748e-5029.59Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
back to top