TCONS_00071690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071690
Unique NameTCONS_00071690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071690 ID=TCONS_00071690|Name=TCONS_00071690|organism=Clytia hemisphaerica|type=transcript|length=439bp
TTCACAAATTACATTTTCGTTAAATCCACAACTTTGTGGCTGGAGTTTAA
TTGGACTCCTATCTAACTCGACACATCTTGGGACTGAATCACTGAAGGAC
GGAAGATCGTCGAAAAAAATGTCGAGAGTCAGTGGGGCGCCATTGATCCA
TTTAAAGTCGGATGGCACTGCTGGGTTAGAAAGTGTTTCTGCTGTTAGTC
CAATGTACCGGTCCATTACCTGTTTAATCGCCAGCAATTTGTAGTATACG
ATAAAGAGACCTCTGATCCCAGTGTTGTTAACTGTAGTGTTCCTCAAGGA
AGCTTTCTGGAACCACTTTTGTTCCTCCTGTTCTTCAATGACTTCTCCGA
CTGTTTCACAACCTACAATACCGTAAAAACGTCGGAGGAAGTCAACAATA
CCCTGAATGCTGAGATCACCAACGTCCAATGCTTTCTCG
Run BLAST on NCBI

transcript from alignment at scaffold_63:1024830..1029505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071690 ID=TCONS_00071690|Name=TCONS_00071690|organism=Clytia hemisphaerica|type=transcript|length=4676bp|location=Sequence derived from alignment at scaffold_63:1024830..1029505+ (Clytia hemisphaerica)
TTCACAAATTACATTTTCGTTAAATCCACAACTTTGTGGCTGGAGTTTAA
TTGGACTCCTATCTAACTCGACACATCTTGGGACTGAATCACTGAAGGAC
GGAAGATCGTCGAAAAAAATGTCGAGAGTCAGTGGGGCGCCATTGATCCA
TTTAAAGTCGGATGGCACTGCTGGGTTAGAAAGTGTTTCTGCTGTTAGTC
CAATGTACCGGTCCATATCCCTGAAAAGTAGAATATTGTTGTTTCTTTCA
TTTGACGCGCTCTCTAACCATTAACAGGaaatcattttcattatttaaaT
TAAATGTATAGAACTAAAGTCCGTCTCAATATTATCTGAAGTGGAGACAA
AACAGGCTGCAACTCCAGAGAAATTCTCTTggttttttaaaaagcttttc
ttAGAAATAATCGAAATAAACAGTGTAATTGATTTAGATTTCGTTCGACA
TTGAAGAGTAACTGATTCTGCACatgctgatatttttttttcgtgCGGAG
AAAGAAGAAAACTGGCAAGATGAGACAAACAAATGTCAAGTTTCACATCT
TCGTGCTCTTATTTGTTTTGGGAAGatctaacctgagatcagattgtgaa
tatTTTCTGTACAcgacgctgaagctctaaagggatgtgtgaaaacaaac
aatctgacgaatatgcaatctcgaaaacgtaaggaccgcgttcgtctaaa
aggactagaaacgacaacaaagttccgtgattgtgtttatgaatagggcg
ccgtatcggtttttaactttccggcgcacaacaagattcttgttgtaaaa
tctTCCGCTGGAGGattattttcctcagatgtataattttcaagcgcctt
cagaggtttaccgtgtgcgtaagaaaattacgaacatctgttatcaggtt
aggaAGATCCGAATCGACAGCACCGAGCCTCTTGACACCAAACATTCAGT
CAAACATCCGAGGATTGTTTAGTAAAACCATGAAGGTaatcaatgccttt
tgttctattctgatttatcatcggaagcaaacagctgtttggttgctttg
ggaataaaataattaattttgggtatactcgtgggaatatttaagataaa
tgaaaagacattacattttttaACAAGtaaattgaaatataatagccttg
tcataaaaaattgaaaaaaacttcacataataagcacaatactctaagct
tctaggggaagctgcccataaagccatcgatcgattttaaaaaagaatta
cgtgttacgattaggagCCTTGTATctatcattttgtcagagtatgtaaa
ccgctgcccacttagacgtgaagattttaagataaaaaactttcaatgat
aatgtgatgcgactctcaatgttcacaaaatgccagcccaaaaatgtgtc
cttatgaaattaatatattcttttatccttaaatcagttgaaactatttc
gaatcgcattttaactaagatttctcgcaaaattaagtttttcaaaattA
ATGGACCAGCCTCTTTCTGTTTAAAGTTCTTATCAAGTTATAAATTGATG
TTTTTTGCTTCCAATGATGGTACATCAAAGAAAagccgctttgaatagat
ttataaaagatttcaacgaccatttaggtcattaccgagacgttttctct
ccatctatatctttattaccttcatgatgTTACCGATAAGTGTTCATTTG
AAGACTAAAAAACTGATGAATAAATTTCGATCGGACGATTCATACAGTGG
TGTTGCTATGTTCATTTCCGATCATATCAATTTCGAAAGACCAAAGGACC
TCGAACACAAACGCTTATAATGTATCTGGGTCAAGATCAAGGAGACAGAC
GTAAGACTATCAGAGGCAATGACAAATCTCACATGACAAAGGAACTTAGG
AAGCAAATCATGAAGCGCTCTcgcttaaaaaatatttcaagaaaaacaaa
acttccTGAGGATATCCAAGCCTATCATAAACAGAGGAATCTGGTagtaa
aattaaatgaaaaacaaaaaatatcttaTTTTGAGAGTATAGATACTACC
AAAGAGAAATCCCTCTGGAATATGTGCAAGCCTTATTTTACCAACAACGG
CTGTTACCAAGGCAAAATTGTGCTACCTGAGAAAAATTACATTGTTTCTG
ACGATCAAAAGATTGTTAACATATTTAATAAATACTTTAGAGACATTACA
AGAACTCTGCCCATTAAACATACTGGAAAGAATTTTGACAAATTCTCTGA
GCCAGTTCTCGAAGCCCTTAATCACTTTTCAGATCACCCCAGTATCATTG
AGATTAAAGCAGAGACTTTTAATGATATCAATTTCGATGTGTAGATAATA
ATGAGGTTCGTAAAATCATCCTCTCGCTAAATCCTAGAAAATCTGTCAGT
GGTGATTTACCgattaatatcttaaaattatCAGTCgatatttatttaga
ttttataACAAATTTTATTAATTCATCAATCCAGAGAGCAACGTTTTTCC
AAATGAACTAAAATTTGCTGACATCAGTACCGTCTTTAAGAAGGAAGACG
AGATGGATAAAGTGAATTACAGACCCATAAGCATACTGCCAGCAgtctca
aaagtttttgaacGTGTGCTTTTCAATCAACTTAACACATTTATCGAACC
TGAATTTAGCAAACTTCTCTGTGGATTTCGGAGAGGCCACAGCACACAAC
ATGCTATGCTATGCCTTCTCAAAAGGTGGCAAGCATGTTTAGATAAACAT
GAGATTGTAGGCACTGTCCTCATGGATCTTTCAAAAGCTTATGATTGTCT
GAACCACAAGTTACTCATTGCAAAGTTACAAGCCTATGGAATCGGAGGTT
CAGCTTTGCTTTTCTTATCTATGATTATCTAAAAAACGAAAGCAAAGGGT
TAAAATTGGATCCATTTTCAGTGAATGGCTCGAGAGACTTTCAGGAGTAC
CACAGGGTTCAATCTTAGGTCCTTTACTATTCAATATTATATTAATGATA
TAATTAAATTTGTAGAGCAATGCGACATTTGCAATTTTGCTGATGACATT
ACTATCGATAGTAAGTTATTTTGATGGGTGACTTCAACATAAACTACCTT
GATAGAAATGATCACAAAGATGAGAAACATTTTATAAACTTATCGGGGTT
CGATCAGATGATCTCAAAGCCAACGAGGATTACGGAGACATCTTCAATAT
TAATCAACCTTGCCTTGACCACcgataaagaaaaaatatctgATGAAATC
GTCATCCCGCTATCCCTCATGCCATATATATACCCAATCATGACAGGATT
GGTATTGTCCAAAAGAGACACCATCAACGGTACGAACCGAAAACAATCAA
ATGTCGCAACTTTTCCAGGTATAACCCGGATTTAATGAAGATCTTCGCCA
AGCAGGCTGGAACCTTGTTTATGAACAAGATAGCCCAAACAAAGCCtggg
aaatattcaaaatcatcACTTCAAACATTTTCAATCGTCACGCTCCGTTA
ATCGCAAAACGAATCAAAGGTCGTCAATGTCCATGGTTAACCTCGAACGT
CAGAGCGAAGTTAAACGACCGCGATGCTGCGCTACGCAGATACAGACGCA
CAAAAGACGAAGGTGACAGGAACATCTACCGCCGTAAAAAGAACCGGTGC
ACCGATTGTGTCAGACAAGCCAGAAATAATTATCGCAAAGAACTGTTAAC
TTAAAGGGGCATGAaggtagtaaaatgtaaacattgtgcgaaccacatgt
cattaaagagaacaattaaaatcacgtgtccaaaacaaacttgtaaaaca
attgaacaatcaaaattagccctatttggtttgatttttattttgatttt
gtatgcCCCTCGTCGACTTCGTCTGGAGACCAATCAAAAGATTTCCGATC
GGCACCGACAAAACTTTCACTTGTAATCCAGTAGAAAGCGACGAAATCTT
CAACTCCTCCAAGGACTCAAAACGCAAAAAAGCTGCTGGTATCGATCAGC
TCTCTTCAAACCTACTCAAAGATTCTGCACCAGTGATTGACAATTCACTA
GCACACATCATCAACATTCAAACCGAGTGGAAGCAAGCTTAAATCACCCC
ACTCTTCAAACCCGGTTCTTTCTTTTCAGCGGAAACTAATGTCCCATTTC
CATCCTTCCGGTGATTTCCAAAATCgcagaaaaaattgtaaaaaaacaat
taacACACCACCTCGAAGAAAACCACCTCTTACTGATCAGCAGTTCGGTT
ATAGAAAATTAACTTTCGTATTTGAACTAACTATTCAAACGAAATGGCAG
TCAACCTTTTCATTGACAGCATCTGATGTCGACAAAGGGAAGTACATCGG
TGCATTGTTCTTAGACTTATCCAACCATAAGTCATGGATCACTACTACAA
AAACTTCCATCGTACACGGAATAAAAGATACCGAGCTAGGTTGGTTCCAA
GACTACCTGTTTAATCGCCAGCAATTTGTAGTATACGATAAAGAGACCTC
TGATCCCAGTGTTGTTAACTGTAGTGTTCCTCAAGGAAGCTTTCTGGAAC
CACTTTTGTTCCTCCTGTTCTTCAATGACTTCTCCGACTGTTTCACAACC
TACAATACCGTAAAAACGTCGGAGGAAGTCAACAATACCCTGAATGCTGA
GATCACCAACGTCCAATGCTTTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044533XLOC_044533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071690-exon-scaffold_63-1491911889:1024830..1025045TCONS_00071690-exon-scaffold_63-1491911889:1024830..1025045Clytia hemisphaericaexon
TCONS_00071690-exon-scaffold_63-1510915933:1024830..1025045TCONS_00071690-exon-scaffold_63-1510915933:1024830..1025045Clytia hemisphaericaexon
TCONS_00071690-exon-scaffold_63-1575043694:1024830..1025045TCONS_00071690-exon-scaffold_63-1575043694:1024830..1025045Clytia hemisphaericaexon
TCONS_00071690-exon-scaffold_63-1491911889:1029283..1029505TCONS_00071690-exon-scaffold_63-1491911889:1029283..1029505Clytia hemisphaericaexon
TCONS_00071690-exon-scaffold_63-1510915933:1029283..1029505TCONS_00071690-exon-scaffold_63-1510915933:1029283..1029505Clytia hemisphaericaexon
TCONS_00071690-exon-scaffold_63-1575043694:1029283..1029505TCONS_00071690-exon-scaffold_63-1575043694:1029283..1029505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1024830..1029505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.292167	0	0	0.0957421	0	0.115232	0.107158	0.412231	0	0	0.299658	1.29576	0	0	1.37428	2.50061	0	0.273831	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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