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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071689 ID=TCONS_00071689|Name=TCONS_00071689|organism=Clytia hemisphaerica|type=transcript|length=2218bp
TTAATATTTTGCTTTTTCGGGGTCCTTGGAAATACTAAACTTTCTGAAGA
Aattatatttacaattttttataaacattagataaaataaataaaaaatg
taaatacaTTCGTTGTCTTTAATTCCCAAAAGGAAATCTTGGTTGTCATG
ATAATTATACCAAACAAAAGGAGATATGGGTTAGAGAACTACCGTTAATG
GAAACATTATGAGATTTTTTTGGGaattgaattattttaaagCTATTAGA
GTTAATAATGGCCTCACAAAACAGCGAGTAACGAAATCCCTATGGTGTGG
TTACTTATCACCAAAAAGATTTAAAGATTTCCAATTGGGaaagtcagcaa
aaatttgtacagttgagaagaaaaaaataaagagagTGAAAGaataccga
aaaaaataaaaatttataataaaaaagcTCTCATAAAAAAGCTGTAAAAT
GTATAtaacagtaaaaaaaaatttgaaatgctaatttggcgaattgtatt
ttcactgaaattttcaCGCGACCTTTCCCACTAGTCTGAATcgtagacct
ctacaaaacaGCAGGTattataaggagcacgaatccgttctAGTGGATGC
AAGTAGCCTACTTTCCCACTGACGGAGTGCAAAAAGTTATAGTAAGTGGG
CATAAAATGAGTGAACTCGCCACCAAAGGAGATTGAATAAATCAAGCTCA
GAAACCCAAAGAGAATTATCGTTGTTTAGAGCTTCCTCCTTTCCTATTGG
AGGAATTTTCAGGACAATTTTCCTATTGTGGAATTTTCTTACCCATTATT
TCAGGAGCGTAGGCaagggggcgcaaaatttgtgtaggagagcagatttt
tatgacacaataattctatttttatattatgaatagataattacagtgtc
ataaaaatctgctctcctacgcaaattttgcgccccttcTGTATACGCTA
CTGTTATTTGGAACCCTTTTGAATTCAATATGATGATTATATGATGCTAT
GACAATGATGAGCCCTCCCCATCGGGGAACAGGTCCCACTCATTCCTGCT
TTTtcagtagtagtagtagtagtagtaggaACGCTTGGGCAATAAACAAT
CTCAACTTAACTTAACTGTACTAAATTATACTAAAGTTCAAAACAAAGCT
AACTGGTCTAACTTGATGATATTTCCATCGGCTTTCAATAGAGAATTTTC
CATCTGAAGCAAAACTAAGTTAACTGAAATAGACTCTTCTTACTATATAT
TAACCAACGGCAACGCAAATGTCTGAGAACCACCATATAATCAACCAAAC
TAATGTATTCAAAAGAGCCCCCACAAAAAGTACAGTTATTCTGACGTCAC
TAGGAGTTTGAGTTCGAGTATACCAGTACCAAGAGGTGATGGGTTGATCT
AAATTTGGGCAAGCTCACTGGGGAGGTAATTAAATTCGATTCTAAGAATT
TTGGCGCTTTTTAACGCCCTATAATACGAGCGAAGCAAGCACAAAAAGTC
TGTTAATATTCGGTGTCAAATGGTTGGGGGTAGTTGCCTCCTCTGTACAA
CActatactcttgtctcccgaatagacgggggggggggcccNCCACATCA
CTCAAACCTTGAAACTCGAACCAAGCCAACTTCCATTCAAGCTGGTAAAC
AATATCGTTCCAACGTTGACCTAACGTTAAACCGACGTTATGGGCGTTAG
GTGAACTTCATTTGACGTTGAATATCAGCTCGGAatataatgggcttttc
cagaaaaaaaccattttcccccttttgaggaggtccatctctctatggct
ggaaatgctgtaactccctggaattccaggcaatttcaggtttaagcCCC
Tttggaattttgaattttagtaggatttaaaaagcagttatttttgacag
attttgtatctccctatggaattccgccacatatcaaaccttaacCCCCC
TTTGAACGGAAATGGActtcctcaacagggggtatactgcttttttttgg
aaaagcccaatcagATTGTGGAAGACTCACAAATAGAAAGCTTCATCTTT
ATCAAGTTTGCTACCAGTGGTTGAAGATCGATCATCACCTCCACCATTTA
AAACATTGGATAAATTCCTTTCCAAACAATCCCATTCTAATTGTCGAATA
GAATCATTATCAAAATCCGATTCTTCTTCATCACTGTATATCGATGAACC
ATCCATTGAAACGCCTAT Run BLAST on NCBI transcript from alignment at scaffold_63:922651..924927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071689 ID=TCONS_00071689|Name=TCONS_00071689|organism=Clytia hemisphaerica|type=transcript|length=2277bp|location=Sequence derived from alignment at scaffold_63:922651..924927+ (Clytia hemisphaerica)
TTAATATTTTGCTTTTTCGGGGTCCTTGGAAATACTAAACTTTCTGAAGA
Aattatatttacaattttttataaacattagataaaataaataaaaaatg
taaatacaTTCGTTGTCTTTAATTCCCAAAAGGAAATCTTGGTTGTCATG
ATAATTATACCAAACAAAAGGAGATATGGGTTAGAGAACTACCGTTAATG
GAAACATTATGAGATTTTTTTGGGaattgaattattttaaagCTATTAGA
GTTAATAATGGCCTCACAAAACAGCGAGTAACGAAATCCCTATGGTGTGG
TTACTTATCACCAAAAAGATTTAAAGATTTCCAATTGGGaaagtcagcaa
aaatttgtacagttgagaagaaaaaaataaagagagTGAAAGaatagttt
aggtataaactatgtagaaaagaaataagtttatacctaaactagtGAAA
GAAAgccgaaaaaaataaaaatttataataaaaaagcTCTCATAAAAAAG
CTGTAAAATGTATAtaacagtaaaaaaaaatttgaaatgctaatttggcg
aattgtattttcactgaaattttcaCGCGACCTTTCCCACTAGTCTGAAT
cgtagacctctacaaaacaGCAGGTattataaggagcacgaatccgttct
AGTGGATGCAAGTAGCCTACTTTCCCACTGACGGAGTGCAAAAAGTTATA
GTAAGTGGGCATAAAATGAGTGAACTCGCCACCAAAGGAGATTGAATAAA
TCAAGCTCAGAAACCCAAAGAGAATTATCGTTGTTTAGAGCTTCCTCCTT
TCCTATTGGAGGAATTTTCAGGACAATTTTCCTATTGTGGAATTTTCTTA
CCCATTATTTCAGGAGCGTAGGCaagggggcgcaaaatttgtgtaggaga
gcagatttttatgacacaataattctatttttatattatgaatagataat
tacagtgtcataaaaatctgctctcctacgcaaattttgcgccccttcTG
TATACGCTACTGTTATTTGGAACCCTTTTGAATTCAATATGATGATTATA
TGATGCTATGACAATGATGAGCCCTCCCCATCGGGGAACAGGTCCCACTC
ATTCCTGCTTTTtcagtagtagtagtagtagtagtaggaACGCTTGGGCA
ATAAACAATCTCAACTTAACTTAACTGTACTAAATTATACTAAAGTTCAA
AACAAAGCTAACTGGTCTAACTTGATGATATTTCCATCGGCTTTCAATAG
AGAATTTTCCATCTGAAGCAAAACTAAGTTAACTGAAATAGACTCTTCTT
ACTATATATTAACCAACGGCAACGCAAATGTCTGAGAACCACCATATAAT
CAACCAAACTAATGTATTCAAAAGAGCCCCCACAAAAAGTACAGTTATTC
TGACGTCACTAGGAGTTTGAGTTCGAGTATACCAGTACCAAGAGGTGATG
GGTTGATCTAAATTTGGGCAAGCTCACTGGGGAGGTAATTAAATTCGATT
CTAAGAATTTTGGCGCTTTTTAACGCCCTATAATACGAGCGAAGCAAGCA
CAAAAAGTCTGTTAATATTCGGTGTCAAATGGTTGGGGGTAGTTGCCTCC
TCTGTACAACActatactcttgtctcccgaatagacgggggggggggccc
NCCACATCACTCAAACCTTGAAACTCGAACCAAGCCAACTTCCATTCAAG
CTGGTAAACAATATCGTTCCAACGTTGACCTAACGTTAAACCGACGTTAT
GGGCGTTAGGTGAACTTCATTTGACGTTGAATATCAGCTCGGAatataat
gggcttttccagaaaaaaaccattttcccccttttgaggaggtccatctc
tctatggctggaaatgctgtaactccctggaattccaggcaatttcaggt
ttaagcCCCTttggaattttgaattttagtaggatttaaaaagcagttat
ttttgacagattttgtatctccctatggaattccgccacatatcaaacct
taacCCCCCTTTGAACGGAAATGGActtcctcaacagggggtatactgct
tttttttggaaaagcccaatcagATTGTGGAAGACTCACAAATAGAAAGC
TTCATCTTTATCAAGTTTGCTACCAGTGGTTGAAGATCGATCATCACCTC
CACCATTTAAAACATTGGATAAATTCCTTTCCAAACAATCCCATTCTAAT
TGTCGAATAGAATCATTATCAAAATCCGATTCTTCTTCATCACTGTATAT
CGATGAACCATCCATTGAAACGCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071689-exon-scaffold_63-1491911889:922651..923046 | TCONS_00071689-exon-scaffold_63-1491911889:922651..923046 | Clytia hemisphaerica | exon |
| TCONS_00071689-exon-scaffold_63-1510915933:922651..923046 | TCONS_00071689-exon-scaffold_63-1510915933:922651..923046 | Clytia hemisphaerica | exon |
| TCONS_00071689-exon-scaffold_63-1575043694:922651..923046 | TCONS_00071689-exon-scaffold_63-1575043694:922651..923046 | Clytia hemisphaerica | exon |
| TCONS_00071689-exon-scaffold_63-1491911889:923106..924927 | TCONS_00071689-exon-scaffold_63-1491911889:923106..924927 | Clytia hemisphaerica | exon |
| TCONS_00071689-exon-scaffold_63-1510915933:923106..924927 | TCONS_00071689-exon-scaffold_63-1510915933:923106..924927 | Clytia hemisphaerica | exon |
| TCONS_00071689-exon-scaffold_63-1575043694:923106..924927 | TCONS_00071689-exon-scaffold_63-1575043694:923106..924927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:922651..924927 + |
Blast
The following BLAST results are available for this feature:
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