TCONS_00071685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071685
Unique NameTCONS_00071685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071685 ID=TCONS_00071685|Name=TCONS_00071685|organism=Clytia hemisphaerica|type=transcript|length=3264bp
CGACAAATGAGGTTGTCGGCATGTGTCCAGAAACTACACCAGAAGAATTA
AGAGCTGCAGGTGACAGTGCCCATGAAGCCTTTCAATCGTGGAGAAACAC
ATCTGTTCTTACCAGACAACAAGTCATGctcaaatatcaacaaaagaTCA
AAGATAACATGGATATTTTGGCCAAGATGGTTACTCTTGAGAATGGAAAA
ACAATTGACGACGCTAAGGGCAGCATTCTTCGTGGATTACaGGTTGTTGA
GCACGCTTGTTCAATCACATCACTTTTACAAGGAGAGACAATGCAAGGAA
TCTCAAAAGATATGGACACACATTCTTACAGAGTTCCTCTTGGTGTTTGT
GGCGGTGTTTCAGCattcaaCTTTCCTGCTATGATTCCTTTATGGATGTT
CCCAATGGCCCTTGTCTGTGGCAACACCTTTTTATTGAAACCATCAGAAC
AAGATCCAGGTACTGCAATGTTACTGGCAGAGATGGCAATGGAATGTGGT
GTTCCACCAGGTGTCCTCAACATTGTACACGGAACTAAACCAGcTGTTGA
TTTCATTTGTCAAGATCCACTCATCCGCGCTATCTCATTTGTCGGAGGTG
ACAAAGTGGGTCAATACATTTATGAAGAAGGGGCCAAGCATGGAAAGCGT
GTACAGTCTAACATGGGAGCCAAAAATCACGGTATTGTATTATCAGATGC
TAACAAAGAATCTTCATTAAATCAACTTGTTGGCGCTGCTTTTGGAGCTG
CCGGCCAGCGTTGTATGGCTTTGTCAACCGCCATCTTTGTTGGAGAAGCT
CAAAAATGGATCCCAGACCTCGTTGAAAGGGCAAACAAATTGGTCGTGAA
TGCAGgacacgaaccaaacacAGATGTAGGTCCAATGATCACCCCAGCTG
CCAAAGAACGTTGTGAACGTCTCATCCAATCTGGTATCGATCGAGGAGCT
AATtgtATTTTAGATGGGCGTGGTCACGTAGTACCTGGATATGAAAATGG
AAATTTCGTTGGACCAACCATCCTCACCAACGTCACTCCTGACATGGAAT
GCTACACAGAAGAAATCTTCGGTCCTGTTTTAATCATCTTGAATGCTGAC
AATTTGGATGACGCTATCGAAATTATCAATAACAACAAGTATGGTAACGG
AACAGCTATTTTCACCAACTCTGGTTCAGCTGCACGTAAATTCACACAAG
AAGTTGATGTTGGACAAATTGGTGTCAATGTTCCCATCCCTGTACCTTTG
CCCATGTTTTCTTTCACCGGATCTCGTGGGTCTTTCCGTGGAGATCTGAA
TTTCTATGGAAAAGCTGGAGTCCAATTCTACTCGCAATGGAAGACTGTCA
CAAGTTTATGGCGTGAAGATGACGCGACAGACAAAAAAGCACAAGTCTCT
TTCCCCAGAATGGGTTGAGAAACAATAATTTGTTGGTTCAAAAGGAAAAT
CAATAACATGTTAAAGTCAACAATGAAACGAGTTGTGTTTAAATTTTCGA
ACATTTCGtcatgtttatatttttatagacgtctcttgttttgttttatc
gtcctacttttgtatttttaaatcaatttccattttttgactCAGTTGTA
TAAAATAATATCAATTACGTTTTAATATGTACAATTTGAAaccttttata
ttttttacacaTGAGTTTGTAGCATTGGCTGATGTTTTTATTGTCATATT
CCTCTCGCAGCATCGAGCATCAGTCATGAAATCCGATTCTACTATATATC
CCTCTTTATGGCAAATTTGTTACGTCTACGTATTTCTTCTGCTATTTGAT
AAGCCTTTAGTTGAAATATGTCTGTCCTTGATATACCATACCACATATAT
GTGGTTTAAAATCTCAATCATAATATTTGTCTCTTTACTTTGAAAACATG
TTTATATGGCTTTTTCAGTGTTCTGTTTAGATTCGGGTAGCTATTTTAAT
CAATGTTGTCCGTGGGTGCTACCTTGAGTAACGTTATCCACTCTTCCCca
aataatttttatctttacGTTATACCAACCAGctcaagaaagttttaaaa
tgtaaGCCATTAGTGCCGCAAGAAGTACTGAAAATAGTAATACAAATGCT
GAAATTGTCCATGCACAGTTTTGTATAATTTTCGGTTGGTGATGGGCCGT
GAAATGATCAAATAAGCCAACCTAGAAAGAACGAGAAAgtatagaaaaat
atcaaaaatgacgATCATCCTAATCttctttaagctttttaaaatacTTG
ACATCAAATCATTGTAATCTTGGTAAATTAAAGATCGTCTATGGATGATA
ATATTCGTGTCTTCTGATAGCTCATATAAAGATTATGCAAGTAAATAATT
AGATTCTAGATTAGTTTACCCAGCCTCCTTGGTGTAAAATCCAATCCACC
AAATCGTGTTCAATAAATTCAACAGTCCAAGTTTTAATTCGAGTAACATG
AATACTAGAACCATTTAAAACACAATCAACAGCCAACCCACCAGCGAAAG
CAAAAAACGAAACAATTTTTGGCCAGTTGATACCTTCAGCAAACAACTCT
TTTGCCACATTCAAAAAAATACGTTTCAAATTTACATCAGCTAATGAAGA
CCTCACATTGAGTTGTTGTAAGATTTCGGTATAAACAGTCGGATGTTTAA
CTTCTAAAGCTTCTCCAACGTACATTAAAACCTTTGACAAATCATCCATC
GTTAATAAACAGCCATTCGGAGAGTGCCGTTTTTCTGCCATAATTCGTAC
AGCTTCTATCGTTGCCGCTTTTTCACTTTTCGCCATTGAGTTTAAACGGT
TGGAATTGGGATATAACTCGTCAACTGATTTTGAATTCGATCCCCCTTTC
TGTCCTTTAAGAAGGTGTTTAGTCGATTGTGATATTTTTCTCTGTTTGAA
ATTTAATCCAGACCGTATCAACCTGTCGTCCATGTAATCGTTAGATAAGA
TTTGAGCCTCGCTGATAATTTCATCGCGAGATTTACTACCATCAAGACGT
CCGTACCTAGCTCGATTCATCGCAATTTGAAACTGTAGCAACATTTGTTT
AAACGTAAACTGTCCTTTTTCAATTAGTGATGGCATTATATGCTTTATTT
GAATGACAACAAAATCCTTTTATTATTATAGACCGCTAAGTGATTAATAA
GCACTAGAATGTTGCTTCCTGTTAACAAATTATCCTCTCTCCCTCTCTCT
CAATCAACATAAATAACGATATTAGCTCCTTCGCCTTTTCAAGAGCCCGT
GTTGTTTTTCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_63:775046..786412+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071685 ID=TCONS_00071685|Name=TCONS_00071685|organism=Clytia hemisphaerica|type=transcript|length=11367bp|location=Sequence derived from alignment at scaffold_63:775046..786412+ (Clytia hemisphaerica)
CGACAAATGAGGTTGTCGGCATGTGTCCAGAAACTACACCAGAAGAATTA
AGAGCTGCAGGTGACAGTGCCCATGAAGCCTTTCAATCGTGGAGAAACAC
ATCTGTTCTTACCAGACAACAAGTCATGctcaaatatcaacaaaagaTCA
AAGATAACATGGTATGTGAACACGTTCCTTTTTTTACGAACATccattcg
gatgttcttaacttttcgagtttgaagcttaaaaatgttcttaacatatt
cttattttccccattttttgtgtatttttttccattttcctaagaaattg
actGATTTCgagtccacgaagccttaaattgttcttaacttgttcttaac
attttggccatcgaagacttatgttcttatatagtttgttcttataaaaa
aacatgtattcaaCTCGGTTTAATAGCATATCCtaacaattcaaaaaaat
tatcttgtGTCACTGTCGTCACCAAATCATTAGCGAGTTAGgaacagttg
actctctctaattcgattttcaaaggggAATCTGATAATTGTCATCGAAT
AGGGGAacttatcgaatagtagagtgtCGCTTATAAGAGTTTCCTGTTGA
CAgggactttcaatattattgaataatagagcgtatcgaatagtagaacc
tCGAATTAGTGAACGTTAACTGTATATGCAATTTTGAGGTCAGTAAATTG
ACttaagcgatttggaataacccgcagttttgacctgcaaaatcgaggac
gataAAAGTGCCGATTTACCGTCGTCTTCAGTCAATATTAAAGATCTAGT
AAAGTTCGAAGTTAATCGTAAAACACACATACCCtgtaaatcctcgaata
agcgcccgggcgcttatttaatttttcagactctaAGGGGGGCGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNga
atctgcttaaacttaactgtttcaaaggattgatttttcaaaaaaggatg
aataaaagaaaaattagaaaaatccaattgacaatttctatcattttatt
cttaatcgctttctttctttttaagacacaagTATCTACTCAATATCTTA
GTAGGATCTCTTGGAATATGTTTCAGTCAAGTTTTTACAGTTTGAAAcct
aatgaaaagaaaattacaGTATTTTTCTTCGTTTCTTCTTAGGATATTTT
GGCCAAGATGGTTACTCTTGAGAATGGAAAAACAATTGACGACGCTAAGG
GCAGCATTCTTCGTGGATTACGTAAGTCTTTACGTATTCTTACGTATTGT
TGCTTGCATGCTGGACACTGACTGAAACCCTTCCTCAAACACAATTAGAG
CTACAAATTAGTACGGGCCTAACTAACCGAAAAAAtgaactgtttttttt
taagattgatTATGGGCTATCATAATAGCCTGTAAAGAGcgcaaagtatt
ttttattgCAGTTAAAAAGTGCCATTCTTTGTCTGACCCGTTTTTTCTCT
TGTCTCTTGTTGCGCCTGTGTCGGATTGTTGTccatttttttcgtttttt
tcacaCCTGGACCCTCACCAATTTGTATCTTGTATTACTGAAAATGTAGA
TAGATATAGACACACCTTCGATTGTTCGCTTATGTTCATTGTAGTGTTGC
CCCACAGTCTAACACGCACGTAAGATAAAATTCTGATTTAaattctttac
ctttcagaGGTTGTTGAGCACGCTTGTTCAATCACATCACTTTTACAAGG
AGAGACAATGCAAGGAATCTCAAAAGATATGGACACACATTCTTACAGAG
TTCCTCTTGGTGTTTGTGGCGGTGTTTCAGCGTAAGTGGGTTTTACTCTG
TTTTATTGAAGATCTATACCGGGGGGAGGGAGGTTGTGGACGAACCTTTC
CGAGCAAAGAAATAATTCTTCAAAATGTGTGACTTTGAAAAGTTCTTCTT
GATACCTTCAAATTGAAAGTGGTCGAACTAAAACCAGAGTCTTTTACCCC
TCGaagttttagaataatttttcaccccctggaaaaatagAAAACCTTTC
CTTAAACCCCCCGGAAGTTCTTCTTCGGATCACTACCTGGAAAAgtttgt
ccaccccctgtatggatataaaataaaTGGCCCAATAGAGATCCCCTTAA
AATGTCTGAGTGGTAAAGAACGCACAAATGAGAATGAGCCTTTTTGCACT
TAACTCTCATAAGGTCATTGAGAATGATGAGACTATATGAGCTTCAAGAC
CAAACCGGTTAAAACCAGACTTCTTTTGCTTGGTCTGTATCATAGGTGCA
TTATATAAAGAATGACCGGAATTTCCACCAAGGCTTTGTTAGATGTTGTA
ACATAAAGTTTCTtgatattttcagattcaaCTTTCCTGCTATGATTCCT
TTATGGGTAAGTTTGTTGAATCAAAAGCTGAAGTTAAagtttattttaaa
aagaattgagaaaattctgtaaaatacaaagcTTTCTGAGGAATTTCcta
gtttttaagttttgaattttgagtttTCACATCACCCACCTCCAAGGATA
TCCTTAATTTCATCTCAATTTCGACATCAAGTCttttgttttttggactt
aCCTCGGAGTTCCCATCTATTCTATTCTTTTACATAGCACTCCAGGTAGA
TCCATTACGCATGTAGCTTGATTTCTTTACGAAAATAATTACTTGACCCG
ACCACTTCACCCAAAGATATCGAATATCCTCTGAAGGGGTGATAAAATTC
TATTCATCATCTATTTTTAGATGTTCCCAATGGCCCTTGTCTGTGGCAAC
ACCTTTTTATTGAAACCATCAGAACAAGATCCAGGTACTGCAATGTTACT
GGCAGAGATGGCAATGGAATGTGGTGTTCCACCAGGTGTCCTCAACATTG
TACACGGAACTAAACCAGGTATGAGCTTGTCTCATTGTTTAAAGTTCTCC
CATCTCTACTTTGAAGTATATAAGAGGTTTctccgtctcaaaattctgca
aaattcaccaaaagttAAAGAATTATGTTTTAATATCTGTATAAAATCCA
TTTTAGCCTTTAATACACCTTGTAAACACACTgtgaccgtagtacagtgg
cagagcatccggctacggttcgcaaggttgtgggttcaacccccagccgg
gtcataccaaaggttcccaaaatggtacttgatgcctctctgcttgatgc
tcagcaacaaagagaaggatcaagggtaagtggagaaatccagggagaaa
gagtggcgccctcccctaccttcgggtagatagctatcgaaagaggagcc
ttcggtcgcctccgactgcggtcgcagacttacttacttactaaacACAC
TGTTGTCCAATCTTAGCGTTACATGCTGAAAATTGTGCACTCAAGTGTGC
TTAGAGTTTTACGTGGTGGCTCGATCAGTTACGAGGAATCCTAACGTAAG
AGTTATCTGATGTATGAAATTTAAAGGACTGATTATACTGATATgatatt
tcttcttcttttcagcTGTTGATTTCATTTGTCAAGATCCACTCATCCGC
GCTATCTCATTTGTCGGAGGTGACAAAGTGGTATGTTTTCCTCCAGATGA
TGTCATCGTCCGTTACAGGGATAGTAAGGGCGGGAAAATATTGTATGTTT
AATATTATGCGCATAGTTTACAGTCGTTAAGGCGATCgatatacggaaaa
aaatcggcgggaaaGTTTCGAAGGagctggcaaactctaccggcgtttaa
ctcttttcggcaaaaaaccaGTGGTCTGCAAATTTTCCTTGGCTTTGGGC
TTGTATGGCTtcttcttagatagtgatttgtcttggACTAAAGCATAGTC
CAGTTTTCCTCTTGAAACAAAGATCATTGCTGTTGTATTAGATGTGAGTT
TCATAGCGTTGATATGTGTGACTCATTTTTGAACACCTCTAAACGTTATA
AGTGAGTTTATCTATTTGTGTTTTTCTGTGACGGTGACGGCTAGCTTCTG
ATCCTATaataatacactcttctcgagatgcataaatttattgttgtcct
cgttttcaaacagatttcattgctataaaattacatattcacaatgataa
ttgtgttgtttacacctcatgagacattttgaatttcaagtatttttgtt
ttagagttaatgtttaccttttgggaatttaaattggtttaaatgtataa
tttcatagcaatgaaatctgtttgaaaacgaggacaacaataaatttatg
catctcgagaagagtgtattgacttgaagacgacggtaaatcagcacttt
taccgtcctctaCTTTGCGGTTAAAAACTGCGggctattccaaatcgctt
cagtcgaTTCACGCAACcatcttcttcttcaaaaaAAGCAAATACGGATC
CATATCATTCTATTGGCTTGCTTCGGGGCTATTATTCTAACcaataattt
tctgaaaatgtgACGAGGTAATAAAATTTGCTATTTATTTCACAGGGTCA
ATACATTTATGAAGAAGGGGCCAAGCATGGAAAGCGTGTACAGTCTAACA
TGGTATGTGTAATTTGGtgaaagaaaatagttttttccGTTTTTAATTCC
ATTTTGATAACCCCATTTCTTTCCAAGAATTTCCAGACCTGGACATTCTT
TTTCCAGACCTGGACATTCTTTTTCCAGACCTGGACATTCTTTTTCCAAC
CAGTTCAGTCCTATAAGTTTTGGTAATTTCCATTGCCCCAGCTTATTTCT
ATACCTGAGATTATTCATGTTTCGATATATGTTTTTAGTAATACCAAAAA
CAATGGAAACTCCGACGGCTAAAAAAAATCTGATCCTATAAAGGAGAAAT
CAATATTAATCACCATTTTGTTTTCTAATTAATGTTTCATAGGGAGCCAA
AAATCACGGTATTGTATTATCAGATGCTAACAAAGAATCTTCATTAAATC
AACTTGTTGGCGCTGCTTTTGGAGCTGCCGGCCAGCGTTGTATGGCTTTG
TCAACCGCCATCTTTGTTGGAGAAGCTCAAAAATGGATCCCAGACCTCGT
TGAAAGGGCAAACAAATTGGTCGTGAATGCAGGTATGCTTTGATGTGTTT
CTTTGATCCTTTTCTATATGATATGAATTGATCTCTTTTTAGGTATGAAT
AAATGATGTCCAGACACCGCTAGTTCTGTGCACGCGAGATACAGATAATC
TTATGAAATGCATAGTGAAGCTACTAAAAACCACGATTAGTCCAAAAATT
CCTCTTAAAGAGTaggatttttcgaaaatcgtctcTCGAAAGGTCACTTT
TCCCACCACTTTTGTCTAAAATGTTACATTTTTGAACCAAATGTGTCTCT
AAAATTCAGTCTAATTTTTTTCTCGCACATAGAACTCTCATCATAGCTTC
CGCCAAACTCAGTTTATGATTCCttccttatttatttttcaggacacgaa
ccaaacacAGATGTAGGTCCAATGATCACCCCAGCTGCCAAAGAACGTTG
TGAACGTCTCATCCAATCTGGTATCGATCGAGGAGCTAATGTAAGAACTA
AAAcatgtatttttataagaaccgaTGTTCTTTCAGACTTCAGACTTCAA
TGTTCTTTATATATTCCCAATACACTTATTTGCCTTTCTTGGTTTAAACG
TAGCGATGATTTTCTaagccaatctttaaaaatatttataaggttggggt
tgttcttattttgttgcCAGAGTCCACATTGAGCTGGATTGGCTCCGTGA
AAATTGTCAAGTTTGGAAAATGAACAttaggaaaacttttttttgaatga
CTCAAAAGTGACAAACAAATCACGTGTTTTCTTCATCGTGTACTAATTCt
cttgaaatttttattaactGTAACTCTAAAATATTGGGGttgactttttc
tcttttttagtgtATTTTAGATGGGCGTGGTCACGTAGTACCTGGATATG
AAAATGGAAATTTCGTTGGACCAACCATCCTCACCAACGTCACTGTAAGT
TGAATAAAATGCTTACAAAGTATCGATCGGTGTATGTATTACAATAAAAA
CAGCAGCGCTActattttcttggaaaaaagtACCGAATTACCAGCATAGT
TTTTGGAGTTTTCTGTGATCAAAGTTTGTTTCCAACGTCAAATTAAGACA
AAGCAATTTTGATGCAGAAATTTTGTGTTGGTTCCTTTAGGGTATTTGTT
ACATCATTCTGAATAATTTCTTGATTTATTTCAGCCTGACATGGAATGCT
ACACAGAAGAAATCTTCGGTCCTGTTTTAATCATCTTGAATGCTGACAAT
TTGGATGACGTAAGTTATTTCATTGTTTGTTCCTTTTTAGAGAGACGTTT
ATTTCATTGACGATTTTCGTCCTAAACGACATGAAACTGccaagcatgaa
aacataacgTTTTGTTTTCTTCTGGAGAATCCACATAGTTTTTTTATATG
TCTACATCAATATAGTTCTGTAAAACATTTCAGAGATAATTGTAAAACAA
TAATTTTGGAAAGATTTGTAGgaggacagactttagttttaATCGATCAC
GTCAATCAGAATCAATTTCCTTAATGACGAAAACTCGTTATTTAGTTTAA
TTTTGATCGATGACGTATTTGAAATTGTCATCAGAcgttatcaaaaaatt
tctttttgacaaGTTTTTCCTGTTGTATCTGCGTTGAAATAGATCAGTGC
TAAATACCTTGAATATCTTATCTTAAAGTTTTGGATATACGCGAAAACAT
CCAAGTTTTCAAGCTTGATAGTATCATGTTTTTGAAGACCGATAGTTTTG
TGGAAAAAAGAGTTGACATCCGAGAAAGAGTGAAAAAGGCTTCACCTTTT
GCCTTAGCACTGCTTCAAATGCattattttatctgaaaaaatgAACGTTT
TGTTTTCTTCTGGAGAATCCAAATAGTTTGTTCCTCTACGTGTCTAAATC
AATATAGCTCTTTGAAACATTTCAGACGTGATTGTAAAACAataattttg
aggaaaaagttGAAACCCAAGAAAGAGTGTAAAAAGCCTTCACCTTTTGC
CTTAGCAATGCTTCAAATGCATTATTTTTGTATCTTTACAGGCTATCGAA
ATTATCAATAACAACAAGTATGGTAACGGAACAGCTATTTTCACCAACTC
TGGTTCAGCTGCACGTAAATTCACACAAGAAGTTGATGTTGGACAAATTG
GTGTCAATGTTCCCATCCCTGTACCTTTGCCCATGTTTTCTTTCACCGGA
TCTCGTGGGTCTTTCCGTGGAGATCTGAATTTCTATGGAAAAGCTGTAAG
CTGTTTAAATTCCACTCATTTCCTTTAACCAAATCCAGGATTTACTTAAA
ACACCTCTGTCTCAAGAAATCGACCATGATAACCCAACCTCCACAAGGAT
TTTTTTAATTCaggatattcatgacgtaatcttttatacaaaATACCCGA
AAAACACCGGGCTTTATTAATTAacttaattaattaattaattaactata
ttaattcaaaattcaaattttcgatATTTCTGTAATAAAGATTTATGTTA
CGAATATCAAGAATTGGTCCCAGCTAAGGTGCTCCTTTTGGATTTGCACC
AAATTGGATACGAGTCCTACTTTATTAAAGGGTGCACTACGACGTGCATT
ACCTAGAAAGAGTTAAGTGATTTCTTTTCGTCCATGAAAAACAGAAGAAT
Acacctatttcctattagcagattcatgcaaaagtcacgaaaaaacgtcg
agtaaacaaacttttgattggcggaggcatgcaaagattacctcatactc
tggacattctgaaaaatatgcttgtatatgcaataattcagccaatcaga
gactttctcgacgtttttcgtgacttttttacatgaatctgctaatagga
aacaCGTGTATTCATTTCCTCTTATATCAGATTTCCCGTTTTTGCTCTAT
CCTCTATCTCGCCTGAGGTTAAATAAAGAGGATAAATACCCCCTCTTTGG
GGTTTGAATTTCTCGAAAGTCTTCgctttcattatttttgttggTTTCTT
GTGAAACAATGACAGTCtgattcaaaagaaaaatccgTCTAGAATCATAT
CGTTGTGAAAATGAAAACCAATACACTTAAAATGTTTCACATGTAAATAT
GATAAGAAGTTGCTAAGTGATTTgcttgacaaaaaatttcgattaCTTTA
GTTCTCAGTTGATCCTGAGACTACTCAACAGTCTTTTAGCAAAAGTGTTC
AATAGAACCACGCGTTGGGCAGGGTTAACCAATGaaataaattgattttt
cacatgcagagttatgaaattgaaaaatgaatttatttttcgaaaacttt
ctCTTTCTCAGATTCCCTTTAAGGTTTTTCATGATCTTTAtttaaaattg
aatgaaaaaatcttcTCTTAAGAGCATCTCTTTACTTTCATAATATTCAA
ATTGGGAACACAATTTCCCCAAATCCGAATCTTTTACCATAAACGATTAT
AAGTGGAAAGGGTAATAAGGTTTTGTACAAGAGTTTTACCTTCTAATCCT
CTCAAAAAAGATCATCCGAAATCCCTCTTAGATATAAATTCTATTAAATG
ACTTGTGAACCGAGTGACTTTGGATTAACATTCTCCTCTGATTTACATTG
TTCTAATCCTCATAATTTCGATCTGAAAACCTTGGAATTTATTCAAGCcg
attactctcgggtacctaatagccggggggggggggttggaataaaaatg
tcctgggtggaaaatgtttgaaaaggagactaatacagcagaattaagac
aaaaaagggaactttcaaaaacattttcccaaaaattaataagcgggggg
ggggggggggggaataaaaatgtcctggggggaaaattttcgaaaaatta
attaggggggggggggggggttggaataagaatgtcctggggggaaaatt
ttcgaaaaattaattaggggggggggggggggttggaataagaatgtcct
gggtggaaaattttcgaaaaattaattagcgggggggggacggctattag
gtacccgagagtacaagCTATATCAAATATCGGAATAGATTTCAGTGAAA
GTATTGAGTGTtggggtgttttcgagtccacgaagccttcaaatgttctt
aacttgttcttaagattttggccatcgaagccgcATCGAAACTAGACAAA
ATTGTTTGGTAGAATCGACCTGATCTTTTATATACTTTAAGTACTCAACC
TTTAATTTTGCTTTTCCAGGGAGTCCAATTCTACTCGCAATGGAAGACTG
TCACAAGTTTATGGCGTGAAGATGACGCGACAGACAAAAAAGCACAAGTC
TCTTTCCCCAGAATGGGTTGAGAAACAATAATTTGTTGGTTCAAAAGGAA
AATCAATAACATGTTAAAGTCAACAATGAAACGAGTTGTGTTTAAATTTT
CGAACATTTCGtcatgtttatatttttatagacgtctcttgttttgtttt
atcgtcctacttttgtatttttaaatcaatttccattttttgactCAGTT
GTATAAAATAATATCAATTACGTTTTAATATGTACAATTTGAAacctttt
atattttttacacaTGAGTTTGTAGCATTGGCTGATGTTTTTATTGTCAT
ATTCCTCTCGCAGCATCGAGCATCAGTCATGAAATCCGATTCTACTATAT
ATCCCTCTTTATGGCAAATTTGTTACGTCTACGTATTTCTTCTGCTATTT
GATAAGCCTTTAGTTGAAATATGTCTGTCCTTGATATACCATACCACATA
TATGTGGTTTAAAATCTCAATCATAATATTTGTCTCTTTACTTTGAAAAC
ATGTTTATATGGCTTTTTCAGTGTTCTGTTTAGATTCGGGTAGCTATTTT
AATCAATGTTGTCCGTGGGTGCTACCTTGAGTAACGTTATCCACTCTTCC
CcaaataatttttatctttacGTTATACCAACCAGctcaagaaagtttta
aaatgtaaGCCATTAGTGCCGCAAGAAGTACTGAAAATAGTAATACAAAT
GCTGAAATTGTCCATGCACAGTTTTGTATAATTTTCGGTTGGTGATGGGC
CGTGAAATGATCAAATAAGCCAACCTAGAAAGAACGAGAAAgtatagaaa
aatatcaaaaatgacgATCATCCTAATCttctttaagctttttaaaatac
TTGACATCAAATCATTGTAATCTTGGTAAATTAAAGATCGTCTATGGATG
ATAATATTCGTGTCTTCTGATAGCTCATATAAAGATTATGCAAGTAAATA
ATTAGATTCTAGATTAGTTTACCCAGCCTCCTTGGTGTAAAATCCAATCC
ACCAAATCGTGTTCAATAAATTCAACAGTCCAAGTTTTAATTCGAGTAAC
ATGAATACTAGAACCATTTAAAACACAATCAACAGCCAACCCACCAGCGA
AAGCAAAAAACGAAACAATTTTTGGCCAGTTGATACCTTCAGCAAACAAC
TCTTTTGCCACATTCAAAAAAATACGTTTCAAATTTACATCAGCTAATGA
AGACCTCACATTGAGTTGTTGTAAGATTTCGGTATAAACAGTCGGATGTT
TAACTTCTAAAGCTTCTCCAACGTACATTAAAACCTTTGACAAATCATCC
ATCGTTAATAAACAGCCATTCGGAGAGTGCCGTTTTTCTGCCATAATTCG
TACAGCTTCTATCGTTGCCGCTTTTTCACTTTTCGCCATTGAGTTTAAAC
GGTTGGAATTGGGATATAACTCGTCAACTGATTTTGAATTCGATCCCCCT
TTCTGTCCTTTAAGAAGGTGTTTAGTCGATTGTGATATTTTTCTCTGTTT
GAAATTTAATCCAGACCGTATCAACCTGTCGTCCATGTAATCGTTAGATA
AGATTTGAGCCTCGCTGATAATTTCATCGCGAGATTTACTACCATCAAGA
CGTCCGTACCTAGCTCGATTCATCGCAATTTGAAACTGTAGCAACATTTG
TTTAAACGTAAACTGTCCTTTTTCAATTAGTGATGGCATTATATGCTTTA
TTTGAATGACAACAAAATCCTTTTATTATTATAGACCGCTAAGTGATTAA
TAAGCACTAGAATGTTGCTTCCTGTTAACAAATTATCCTCTCTCCCTCTC
TCTCAATCAACATAAATAACGATATTAGCTCCTTCGCCTTTTCAAGAGCC
CGTGTTGTTTTTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044527XLOC_044527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071685-exon-scaffold_63-1491911889:775046..775206TCONS_00071685-exon-scaffold_63-1491911889:775046..775206Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:775046..775206TCONS_00071685-exon-scaffold_63-1510915933:775046..775206Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:775046..775206TCONS_00071685-exon-scaffold_63-1575043694:775046..775206Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:776388..776466TCONS_00071685-exon-scaffold_63-1491911889:776388..776466Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:776388..776466TCONS_00071685-exon-scaffold_63-1510915933:776388..776466Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:776388..776466TCONS_00071685-exon-scaffold_63-1575043694:776388..776466Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:776903..777026TCONS_00071685-exon-scaffold_63-1491911889:776903..777026Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:776903..777026TCONS_00071685-exon-scaffold_63-1510915933:776903..777026Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:776903..777026TCONS_00071685-exon-scaffold_63-1575043694:776903..777026Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:777571..777601TCONS_00071685-exon-scaffold_63-1491911889:777571..777601Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:777571..777601TCONS_00071685-exon-scaffold_63-1510915933:777571..777601Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:777571..777601TCONS_00071685-exon-scaffold_63-1575043694:777571..777601Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:777966..778113TCONS_00071685-exon-scaffold_63-1491911889:777966..778113Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:777966..778113TCONS_00071685-exon-scaffold_63-1510915933:777966..778113Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:777966..778113TCONS_00071685-exon-scaffold_63-1575043694:777966..778113Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:778711..778775TCONS_00071685-exon-scaffold_63-1491911889:778711..778775Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:778711..778775TCONS_00071685-exon-scaffold_63-1510915933:778711..778775Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:778711..778775TCONS_00071685-exon-scaffold_63-1575043694:778711..778775Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:779691..779747TCONS_00071685-exon-scaffold_63-1491911889:779691..779747Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:779691..779747TCONS_00071685-exon-scaffold_63-1510915933:779691..779747Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:779691..779747TCONS_00071685-exon-scaffold_63-1575043694:779691..779747Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:780088..780277TCONS_00071685-exon-scaffold_63-1491911889:780088..780277Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:780088..780277TCONS_00071685-exon-scaffold_63-1510915933:780088..780277Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:780088..780277TCONS_00071685-exon-scaffold_63-1575043694:780088..780277Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:780638..780735TCONS_00071685-exon-scaffold_63-1491911889:780638..780735Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:780638..780735TCONS_00071685-exon-scaffold_63-1510915933:780638..780735Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:780638..780735TCONS_00071685-exon-scaffold_63-1575043694:780638..780735Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:781106..781189TCONS_00071685-exon-scaffold_63-1491911889:781106..781189Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:781106..781189TCONS_00071685-exon-scaffold_63-1510915933:781106..781189Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:781106..781189TCONS_00071685-exon-scaffold_63-1575043694:781106..781189Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:781430..781504TCONS_00071685-exon-scaffold_63-1491911889:781430..781504Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:781430..781504TCONS_00071685-exon-scaffold_63-1510915933:781430..781504Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:781430..781504TCONS_00071685-exon-scaffold_63-1575043694:781430..781504Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:782287..782490TCONS_00071685-exon-scaffold_63-1491911889:782287..782490Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:782287..782490TCONS_00071685-exon-scaffold_63-1510915933:782287..782490Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:782287..782490TCONS_00071685-exon-scaffold_63-1575043694:782287..782490Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1491911889:784465..786412TCONS_00071685-exon-scaffold_63-1491911889:784465..786412Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1510915933:784465..786412TCONS_00071685-exon-scaffold_63-1510915933:784465..786412Clytia hemisphaericaexon
TCONS_00071685-exon-scaffold_63-1575043694:784465..786412TCONS_00071685-exon-scaffold_63-1575043694:784465..786412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:775046..786412 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116978	0.196786	0.191727	0.150256	0.37937	0.263406	5.63551	6.60965	13.8712	9.94986	17.5039	22.753	74.315	69.4667	77.1099	116.662	35.4292	36.9564	39.4052	45.0836	50.2423	58.0902	26.3355	36.25	20.5493	9.94061	11.7833	22.8435	266.994	248.303
Blast
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BLAST of TCONS_00071685 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 311/471 (66.03%), Postives = 380/471 (80.68%), Query Frame = 3 
Query:    3 TNEVVGMCPETTPEELRAAGDSAHEAFQSWRNTSVLTRQQVMLKYQQKIKDNMDILAKMVTLENGKTIDDAKGSILRGLQVVEHACSITSLLQGETMQGISKDMDTHSYRVPLGVCGGVSAFNFPAMIPLWMFPMALVCGNTFLLKPSEQDPGTAMLLAEMAMECGVPPGVLNIVHGTKPAVDFICQDPLIRAISFVGGDKVGQYIYEEGAKHGKRVQSNMGAKNHGIVLSDANKESSLNQLVGAAFGAAGQRCMALSTAIFVGEAQKWIPDLVERANKLVVNAGHEPNTDVGPMITPAAKERCERLIQSGIDRGANCILDGRGHVVPGYENGNFVGPTILTNVTPDMECYTEEIFGPVLIILNADNLDDAIEIINNNKYGNGTAIFTNSGSAARKFTQEVDVGQIGVNVPIPVPLPMFSFTGSRGSFRGDLNFYGKAGVQFYSQWKTVTSLWREDDATDKKAQVSFPRMG 1415
            TNEV+G  P+ T  E+ AA  S   AF +W +TSVL+RQQV+L+YQQ IK+N+  +AK++TLE GKT+ DA+G + RGLQVVEHACS+TSL+ GETM  I+KDMD +SYR+PLGVC G++ FNFPAMIPLWMFPMA+VCGNTFL+KPSE+ PG  MLLA++  + G P G LNI+HG   AV+FIC  P I+AISFVG +K G+YI+E G++HGKRVQ+NMGAKNHG+V+ DANKE++LNQLVGAAFGAAGQRCMALSTA+ VGEA+KW+P+LVE A  L VNAG +P  D+GP+ITP AKER   LI SG   GA+ +LDGR   V GYENGNFVGPTI++NV P+M CY EEIFGPVL++L  + LD+AI+I+NNN YGNGTAIFT +G+ ARK+   VDVGQ+GVNVPIPVPLPMFSFTGSR SFRGD NFYGK G+QFY+Q KT+TS W+E+DAT     V  P MG
Sbjct:   64 TNEVIGRVPQATKAEMDAAIASCKRAFPAWADTSVLSRQQVLLRYQQLIKENLKEIAKLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMMGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLLQDSGAPDGTLNIIHGQHEAVNFICDHPDIKAISFVGSNKAGEYIFERGSRHGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEHAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPNMTCYKEEIFGPVLVVLETETLDEAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGVNVPIPVPLPMFSFTGSRSSFRGDTNFYGKQGIQFYTQLKTITSQWKEEDATLSSPAVVMPTMG 534
The following BLAST results are available for this feature:
BLAST of TCONS_00071685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMSA0.000e+066.03Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
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