TCONS_00071684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071684
Unique NameTCONS_00071684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071684 ID=TCONS_00071684|Name=TCONS_00071684|organism=Clytia hemisphaerica|type=transcript|length=188bp
CCAGGTGATCAACCGAATACTGATGTTGGACCTGTCATCTCCAAAGCCTC
TCTAGAACGTGTTGAAAGGCTCATCCAATCTGGTATCGATCAGGGAGCTA
GTTGTGATTTGGATGGCCGTGGTGTCTCAGTACCTGGATTCGAGAGTGGA
AACTTTGTCGGACCAACCATCTTATCAAACGTTACGGT
Run BLAST on NCBI

transcript from alignment at scaffold_63:773752..774220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071684 ID=TCONS_00071684|Name=TCONS_00071684|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_63:773752..774220+ (Clytia hemisphaerica)
CCAGGTGATCAACCGAATACTGATGTTGGACCTGTCATCTCCAAAGCCTC
TCTAGAACGTGTTGAAAGGCTCATCCAATCTGGTATCGATCAGGGAGCTA
GTGTAAGAAtgtatttaattttaaaaatgtgaGAACTCAGCTTCATTTTA
CCATACATTAGCTTTTCCGTCTCGAAATTCAGCAAAATGTTAATATGGAC
TCAATTTTAAGTGAATTTCcattttcctttcaaaacatTGTTTTATTGAC
ATCTTGACTTCTAAAATTCCTTATTTTCACATCTCTTGTGGTATCTTTTG
AAGCCATATAACTTATGGCAACCAAAACATTATTGTTAAATGCCATTACT
TAGGTGGacgaattttattattttttattgcagTGTGATTTGGATGGCCG
TGGTGTCTCAGTACCTGGATTCGAGAGTGGAAACTTTGTCGGACCAACCA
TCTTATCAAACGTTACGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044529XLOC_044529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071684-exon-scaffold_63-1491911889:773752..773853TCONS_00071684-exon-scaffold_63-1491911889:773752..773853Clytia hemisphaericaexon
TCONS_00071684-exon-scaffold_63-1510915933:773752..773853TCONS_00071684-exon-scaffold_63-1510915933:773752..773853Clytia hemisphaericaexon
TCONS_00071684-exon-scaffold_63-1575043694:773752..773853TCONS_00071684-exon-scaffold_63-1575043694:773752..773853Clytia hemisphaericaexon
TCONS_00071684-exon-scaffold_63-1491911889:774135..774220TCONS_00071684-exon-scaffold_63-1491911889:774135..774220Clytia hemisphaericaexon
TCONS_00071684-exon-scaffold_63-1510915933:774135..774220TCONS_00071684-exon-scaffold_63-1510915933:774135..774220Clytia hemisphaericaexon
TCONS_00071684-exon-scaffold_63-1575043694:774135..774220TCONS_00071684-exon-scaffold_63-1575043694:774135..774220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:773752..774220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1673.29 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1673.29	1240.79	995.451	953.163	360.095	317.135	222.424	370.754	175.994	192.248	204.803	189.923	320.788	289.583	158.363	143.911	0	0	0	0	519.828	398.194	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
CCAGGTGATCAACCGAATACTGATGTTGGACCTGTCATCTCCAAAGCCTCTCTAGAACGTGTTGAAAGGCTCATCCAATCTGGTATCGATCAGGGAGCTAGTTGTGATTTGGATGGCCGTGGTGTCTCAGTACCTGGATTCGAGAGTGGAAACTTTGTCGGACCAACCATCTTATCAAACGTTACGGT20406080100120140160180Expect = 2.81e-17 / Id = 60.00SequenceMMSA
Match NameE-valueIdentityDescription
MMSA2.815e-1760.00Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
back to top