TCONS_00071680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071680
Unique NameTCONS_00071680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071680 ID=TCONS_00071680|Name=TCONS_00071680|organism=Clytia hemisphaerica|type=transcript|length=733bp
CTGACATATTGACAAGTAAATATTGGTTTCGCATCGTCCTGTACGTaacg
ttttttcaaaatttattctcTCGTGCGGCTGAGCTTTTGCAAGAAGCTCC
TTCCTTCCACCTCCACCCAGCAGTTCAAACACAGATCACAGATTGACAAG
GTCAAGGACTTAAAACACTTGATACTCCTATCCAAGAAAATGGCTCAAAT
TGGACATAGAGCACTCAAGAATGTTCTCAGAACAGTAAAGCCAAATTTGC
TGTCAAGAACATACTCAAGTGGAGCTccaactGCCAAACTTTTGATCAAT
GGAGAATTCATTGATAGTAAAACCGACAACTGGATTCCAGTCACCAACCC
TGCAACCAATGAAGTCGTCAGTATGTGTCCAGAAACTACACCACAAGAAA
TGAAAGCAGCAGCAGATTCTGCTAGTCTAGCATTCGAAACATGGAAAGAT
TCTTCCATTTTGGCTCGACAAtctatcatgttcaaatatcaacaaaagaT
CAAGGATAATATGGACATTCTTGCTAAGAGCATTACAttggaaaatggaa
aaactttttctgatgcTGAAGGAGAACTTCTTAGAGGATTGCAGGTTGTT
GAGCATGCTTGCTCTATTACATCCTTGCAGCTTGGTGAAACCATGCCTGG
TATCTCAAAGGACATGGACACACATTCTTACAGAGTTCCTCTTGGTGTTT
GTTCTGGCATTACACCattcaaCTTTCCTGCTA
Run BLAST on NCBI

transcript from alignment at scaffold_63:751548..777587+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071680 ID=TCONS_00071680|Name=TCONS_00071680|organism=Clytia hemisphaerica|type=transcript|length=26040bp|location=Sequence derived from alignment at scaffold_63:751548..777587+ (Clytia hemisphaerica)
CTGACATATTGACAAGTAAATATTGGTTTCGCATCGTCCTGTACGTaacg
ttttttcaaaatttattctcTCGTGCGGCTGAGCTTTTGCAAGAAGCTCC
TTCCTTCCACCTCCACCCAGCAGTTCAAACACAGATCACAGATTGACAAG
GTCAAGGACTTAAAACACTTGATACTCCTATCCAAGAAAATGGCTCAAAT
TGGACATAGAGCACTCAAGAATGTTCTCAGAACAGTAAAGGTAAGAAGTT
AGATTGCCTCTCTTCTTTAacttcaaaatttgagaaatgttccttttttt
aagatttttgtgtAATCTGATCGTCTTACCCCTCCTGATGTCAATTGTAA
ATAAACAGCACACTTTGTCAAGATGTCACAATTGACTGTCTCGAATTACA
AAACAAAGTTAGCAGCAACTAAATGTTATGGGTAGAGCCACACCAGGGta
cattattttgataaaaagctGTGTATGTTCCAGTCGGAGGCCTCTATTTT
ATATAGTAATCTATCTCAATTTGAATGAAATGGGTGAGCTGTTCCAGGAA
GATTTCTGAATCGATAAGTTAGAATTCAAGCTGttccaaaatttcagcca
aaaactAGAAATTAATTTTGAGCTGAACAGAATTGCCAGAAAAAATAGtt
tgttccaaaattacgaCAGATATGTAGACTTTTTACTTGtgtctatttat
aaaaaaatgccgTGAGAttaggtaacttgcatcagtggaggctaacatgc
atagccctcaaatgaatgacctggctggtcattaaaatataaagttaaat
caaaacaaaaatggtagagtagagctgtgagctgAGCTGCGAAGTTGTAT
Tttaagttacccaatctcatgccgtgagtggtcctaaatccgacagccct
gcctaaattcgatggggtctttcaaagatacaaactaaaataaaaacaaa
ccattcGCTATGACGCAATgaaaataccaaagtgtcatttaaactgagag
atttgattaCACTGAACTAATTGAACGaaaacattaattgcttcttatac
aaaacataattttttattacaaaattgttaatgttttaaacacaagcaac
agattcagaataatagaggtaattatttttacaactcacactttttttat
cacattaaattgacatcttgacattttagtcattTTGTTAGATGTCTTGT
TTTGAGCGAGAGTTTTTGCAATacagtttattgttcaacttggagctagg
gaatgtttgtaaacatagaattttttttcatagcagttatttgggggatc
ggatttaggcaggggtgtcggatttaggaccactcacggtggTATATAAT
ACACTTGTCCTGTAATTCAAAACCCAAAATTGAATTAGTGGGTTTCCTGA
ACTTTCCTATCATATAAAAATGGccaaacatttttttatcttattaCTGT
GTGGtatcaatagacgatatcggcttaacgaaattctccccgaatgatta
cccatgatgcattgcgcaaaaagatTCAGAAGTCAAaattgtccgtgaat
ttttttgcgcaatgcatcaagggtaatcattcggggagaattcggaaagc
cgatatcgtctattcagGACCCTCCCGGTGCTCCGGAAATTTTTGGAGTT
TTCCGAAGCaactaaaaaaacactatttttctcaACCTTAGTAAGTTCCG
GAGCTCTTCGGGTGCTTTCAGAGCAAGTGATTTTAACATGTTCTGAAAAA
CTGTTTAAACATGGTTACAAAAAATTTGTCCCTAGGTGACGAACTTTGGT
CAAAAACAAGAAATATCGAAAtatcgaaaaaatgaaaaaacatgagGTTT
CACTACCATGAGTCGGCTGATGTTTTAATAATATGCGCATGTGCAGTTAG
TTTTTACACGATTAGCACAGGGAGTGCTATTGTAATTATATCGCAGATAT
CTCCAGAACCTTTTAGCATAGCTGTCAACAACTCTCTCACATTGGGCGGG
AAACTCCTGCATGCCAACGTTTTCTCCTGCGggaaaaaattcagccaaat
ctcccgcattttcaggattttctcccgtatctcccgcatttccaaaaatt
ttctcaattccaaaaaaaattaagattttgaaaatacagaatggcaaaat
ttcctgatttcctgaaaaaaaatctgataaaatttgataaattgtaAGCA
TGGTATTGAAATGGAAAGGAGAAAAGTTTAACCCAGATTAAATGTTAGCT
CTCAGGGGGTATTAAAAGCACACCAGAgcttattttcaattaaatgaAAA
AGCACATAATTTTCTAAGCTGCAATACTTGTGTAAGGGAGGTAaatacac
gtctttttaactttttaagtcttttaagaaacttcaaaactctaactttt
gatagcaaaCTTTGAGAGGGTTTTATACATGTGACTGTATATAAGGCAAG
TCAACTATGCAGTCAATACTTTAAAAAGGTAGGGTGATGTCAGGTTAGAC
ATGGATGAAAAGGGCATAAAAAATGGCCCGATATGAGGTCGAAGTTTCTC
AAATAGGTGGACCTGAAATTTCAGGTGGGACCTTGAATCCCCCTGCACAC
TGTGCATGGTTTGTTTACTTCCCCTAGTCAAACAATGGAGAGAGGGAGTG
ATAGGTTGATCAATAGGGTTACAGACTTATTTGCAAGATAAGAAACCAAG
TGCAAAACCCTTTTACTCAGAAGAAAATTAGAAGGTATCTTATCTTTTAA
CCTTTagtagttttaaaaaaatactattttgaaGTTCCatgtttcaaaga
tttcaaaggaAAACCTGTTTGCTGAATGCAATCTTTCTGACACATATGAT
GGCATATATTAGTTCATGTTTTTTGGCACACTGGTGTGGTGTCATTGGAC
CTTCACAATTTTTAGTTCTTCAACTATCCAAAGGCAACATCTgacaaaaa
tactgaaaatcacTCAACTCGCCCCTAgaaacaaaatggaaaaatagatC
TGATTGTATTCAAATGGCAGTCAATTTTTGTTAATATTGCGTACCTTTGG
AGTGATGTGTGATGTTGTTTGAGGGGCGTCGTAATCTATTTAGACTACCT
TTGCCCATTGTGGATTTTGTTTAAACATCTTGTTCCTGCATTCAGCTTAC
TGAGGGTTAAGGGATTCATGCCTAAAAAGAAGAGTTTTTgtctaaaaaaa
gaagaattagtAAAGCAACAAGGTGCTAAGCATGTATAAAAAAGATTATG
TGCAAAAGTAAAGAGGTATATATAACAATTGAATGTTTTATAATAAAAGC
GGATTTCGGAAGGTTGTGAAGAGAGCTtggatataaaaataaataattta
aaataaatacgTACCTTTGGAGTGGAGTATATTCTACTCTTAGATCTTGC
TGATaagtgctggcttgaaattgtAAGATACTAATTGATTgaggtgaaaa
aaattgaaactccAGACTGaatcaattcaaattttatcatctAATAAAAC
TTTGGTATTAAGATTTGAAGTTTCTATGAAAATTGTACATGCAATTAATT
TCTTTCACTTTTAGCCAAATTTGCTGTCAAGAACATACTCAAGTGGAGCT
GTAAGTATTTGAGATAAGAAATATACCTTTAAAATCTTTTCACATATTTC
TCACTAGGATCTTTATCCATCCTTTAAAAAACCTCATAATAATTAAAAGA
TATTAAAACATTATTTACAGTAAAATAAAACAGATGGATCATCTTGACAT
GTTAGTCTGTCAAACCCCTGtacaaattttacattttttacaattttgaa
attttcaaaaactctgAGGCTGTTGAATATTAGATTGAATTGCTTTTTTG
AATTATTCAGCTTGAGCCTATGTCATTGATTACACTTCCtaattctttca
aatttcaagtaaattgctttgttttttttttcagccaactGCCAAACTTT
TGATCAATGGAGAATTCATTGATAGTAAAACCGACAACTGGATTCCAGTC
ACCAACCCTGTAAGTATTAGCtctagtattttttttcaaacatattAAAA
TTTTACATAGAAGGGTTCATTAGATGGTTGTACATTGTCTGGTCTGCAAG
AGTTATTGTAATTCCGATATCTTATTTGATGGATAATCTTCCAGCATACT
GATGTTTagaatttccaaaaattaaaagaaaaattccaaaaattataaca
attatgacaagtattcaaaaataaattgtaTAAAGACAGACTTCCAGATA
GATATAGGCCTAGGGAGCTTAAAGATTTCATTATTTCTACTATTAATTTG
TCTGATTCCTACAGGCTGGAAGGCCCGTCTTGTTTCTATTTTAACTTTGT
CTGTACTTTCTCTGATTCCTACAGGCAACCAATGAAGTCGTCAGTATGTG
TCCAGAAACTACACCACAAGAAATGAAAGCAGCAGCAGATTCTGCTAGTC
TAGCATTCGAAACATGGAAAGATTCTTCCATTTTGGCTCGACAAtctatc
atgttcaaatatcaacaaaagaTCAAGGATAATATGGTTTGtgttatttt
tggacctaccccggtggaggtcctataaattaacccgtgttcgttcgttc
gttcgttcgttcgttcgttaccaacttttctcgggattggctcattagtt
tttcctgatttttggcacaaagatgcaaaatggtaatgcccaaaatgtga
cggagcccgattttcgaaaaaaattNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttattttcgaaaaacat
ttttttccggccgaaaaagccggaaatatgccggaaatactgattttttg
gcattttctcgagattttatcattagttttttctgattttttgcacaaag
atgcgtattaacaatgcccaaaacatggccgagtccgatttttgagaaga
aattttttccggcggaaaatgcctgaaatatgccggaaatcgccgttttc
tgGGTTTTtattgggctttttccttttaaataaaatggttgttttttcat
tcaaacacattattaatagcaatgtccaccatcaagcatgtttcaatttt
caataaaattgaattttgaagccggaactagtTAAAAATCTCCGGAACAA
CCTtattttcgctggaaagacagtatttcttgaatttctcgagctgtact
ttatatttttttgaaatttttcacaatgatgcaaaatgactatacctaaa
atgtgacggagctcgattttcgaaaaacattttttttcggccgaaaatgc
cggaaatagccggaaaaaccggttttttgacatttcctcgaattttcatc
ttttgttttttctgattttcttcagagagatgcgtattcgcaatgctcaa
aacatggccgagttcgatttttgagaataatttcttctggtggaaaatgc
cggaaatcgtcgtttttgcagattttcattggattttttccttatatttt
caatttttttcacaccaaaacattattgataacaatgctcaccatcaagt
atgattcaattgtcaataaaactgatttttgcgaccacaactttctattt
tttccttacaaccctttcctctccccccatcaacaatcaatgatgaattt
tttgcgttatgcatttttgctaaacgctatattttctgactgattttttt
catctttctcctcgcattgctatctaactttcatcatcaggtaggtccat
tcagcatctagcttgtttaatAGAAATTTATGAGAGTTAGCTACAAAAAA
TCAGTCAACAACAAGTGTTTTATTagcaaagaagatttttttgtcaaaat
ttcttgaaatcatAGAGGCCACTACTTTCTTATTGTATTTCcatttaatg
aaaaaatttagaaaactttaaaaaagctttttgaGGAAATGCCATACGTG
TTTAAAAGCCTAATGAGTTCtcattatttcaatttttaataggATGTGTA
TAGGTCTTTAATATTATGACTTCTTCATTTAGGACATTCTTGCTAAGAGC
ATTACAttggaaaatggaaaaactttttctgatgcTGAAGGAGAACTTCT
TAGAGGATTGCGTAAGTATTATTCATAAATTGTTGTATAACTTACAAAGA
AACCCATTAATGGATAGGGAATGAATACTTATACTTACTTGCTAAGTGTT
ACAGTTTATTTGTCTTACAGTAGATTTGTGAAGTCTTATCTGACTTTAAT
ACATCCAACTTTTATTGATATAAAGTTATGTTCTGCTTTTtatattacct
tattacacgaaagTAAGTAGGCACATgatcaacggccttgaaattaacac
gcaaaaaattaacacaaatttgNTATATTCTATACACTCTCGCATAGACG
GAGAAAATTGGTTTTACTGTGACAAGATATTTTGATGCACCAgtactctt
tgtttttatcatggATTTATTTGAGAAGGATGAGTTTGGTTATGCGTCCG
TTTACAGATGTGGGATTAAAGCATTGAACTACTTTTATCATATTTCGTTC
CTCGAGACTTGCAAATGTTTCAACCTCATANagccttgaaattaacacgc
caaaaattaacacaaatttgctttttcaaggacaccacggctggttttaa
tcaAAGGGGATTTAATTAACACAAAATTTCTTGATTCATGTTAATTACAT
GTCTACTTATTAGTGTAATAAGGTGTATATTTATTATATTTGGGATTTTA
CACTAATTGATCAATCCCAGAATGAACAGAGTCTTCGGGTACGCGAAGAT
TTCTGGATTAACAAACTCCAGACCTTTGAGNNNNNNNNATTCCTTTCGAA
GATGGCGAATTACTTGCAACATGGAACGAGACAATCTTACACACTGAGAA
ACAATTATTGGAAACTTTAATTATTGGTATCAATGAAAGACGAATTTCTT
TGGAAACAAACTTTTGGGATGGTGTCAGTGACTTTGCAAACAGGACGGAT
GTTGATGTGATGACGGATTGGCTCGTGAAATTAGTTATTGATTTGGAAAA
GTTGGAAGTAAAGACCTTGgcgaagaaaaagaagaaattaaggAAGCTGT
GTGGTGAGAACAAATTTTTACTATCTGATGTGGGGAAAAGGATGGATAAG
CATAAGGAACAGTTTGACTTCGTTAGCTCTCTCCTTGATTATGGACAAGT
ACTATCTGAGGACTTTACAATTATGGTGAATTTGCTCACCCTGGACCACA
CTAGCAATACCTCGTCAGTGTCTGTTGATAACTCGTGCCTTGAAACTTCG
GGTCAGAGCAACAGTTCTACTGGGGAGTCCATAGAATCGGAAAATTTTGA
AGAGGTAACCCTGGAATCTACTGGAATGGGTGACAATAGTTGCAATAAAG
ATACAAATGATAGATATATAGGAAAATTTGTAAGCGAAAACGTCATCAAC
TTGTCATCTAGAAATTTATCAAAAGCTGAAATATCTCTTCTTTCAAAGGG
TTTGAAGTTTGTTCCCACTCCTTCTCGAGTTAATAANGTAGGAAAGTTTG
TAAGCGAAAACGTCATCAACTTGTCATCTAGAAATTTATCAAAAGCTGAA
ATATCTCTTCTTTCAAAGGGTTTGAAGTTTGTTCCCACTCCTTCTCGAgt
taataaaaataaacttaagGAGGAGCTTGAAGTTTTTGGTCGGAAACTTA
GGCTGCGGTGGTTTTTTCGGGATGATGACCGGGAGTTTATTCCAAATCCT
TTTGTGAAAAAAAGCTCCTTTAATCCTAGGGGCAAAGATGCAGCCATCGA
GGTTTATTTAAGTCGTTTGGAAGAAGAGATAAATAATATTGATACAAAAT
TGACGTATAACAATCTTACACGCCCTGAAAGGGAAGCCTTAGAAACTTTA
AGAGACGACTCATCAATTATTATCAAAGAGGCAGACAAGGGTTCAGCTGT
GTGGTTGTGTGGGACAGGGAGGATTATCTAGCGGAAGCGGAAACACAGCT
GGGGGATGGGAATGTCTATGAAAAACTTAATAACACAGGTGGAAGTCGTC
TCATTGATATAATTGAAAGTTGCCTTTTGAAGATAAAGGTTAGGGGTGAC
ATTGGTGATAAGACTTTAGATTATTNAAATGTCTATGAAAAACTTAATAC
CACAGTTGGAAGTCGTCTCATTGATATAATTGAAAGTTGCCTTTTGAAGA
TAAAGGTTAGGGGTGACATTGGTGATAAGACTTTAGattattttcttgtt
aataaTCCCAGGTTGGGTAGGTTCTATCTTCTCCCAAAAATCCACAAGCG
TCTATCTAGCGTCCCTGGGAGGCCAGTCATTTCTAACTGTGGCTACTACA
CCGAAAATATTTCAGCCTTTCTTGATTATCACCTAAAGCCCCTTGCCAAA
ACAGTCCAATCTTTTATTAAGGATACcaatcattttttacaaaaactatC
AGGGCTTCCAAAATTATCTAAAGGAAGTTTGTTATGTACTATTGATGTCG
TAGGACTTTATCCTAATATTCCTCATGATGAAGGCTTGGAAGCTGTTAGA
AAAAAACTTGACCAAAGGCAAGACAAAAACATTTCAACTGACTCTTTGGT
TGAACTTGCTGAATGTGTTCTAGAAAACAATCATTTTGAACACAATGGTC
AATTTTTTAAGCAGAAGAGGGGCACTGCCATCGGCACAAAAATGGCCCCT
CAATATGCTATTATTTTCATGGCTGACTTGGAGGAGAAGCTTTTGGGTGC
TTGCGAGTTAAAACCTAAGACCTGGTGGAGATATATCGATGATATTTTTA
TGATCTGGGAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNTTGTGTATATAGAATTAGTATATAAACCTTgtc
aaataaatccatttttatgttgaaaaaggCCAGTTGGCCGAAATATTCAT
TAGAAAGATGATGTGTTTTTTCTGACTTCGTCGGTTACTTACAATATACT
TTCCTGCTAAAGATGAATATCCTAACTCATTCAAACCGCaattaatttac
ttttttaGAGGTTGTTGAGCATGCTTGCTCTATTACATCCTTGCAGCTTG
GTGAAACCATGCCTGGTATCTCAAAGGACATGGACACACATTCTTACAGA
GTTCCTCTTGGTGTTTGTTCTGGCATTACACCGTAAGGACCAACTTTTTC
TGCTAACCTCTAAGGAAGATAAGGAAAGAACAATTTGCTTTGTTGTTTTA
TGAATCCAATCGATTTAAGTAGTAATTAGACATTTTTACAGTTACAAAAA
GTCTTGTAATATTGCTTGCAGACTGATTTTCGATACTTTTTGTCACGGTG
GAAATATCGACATTCCTAAATACTTTATCAACTTTAAACACACGATATCC
CAATAACTCTTACGAGAACTATAATTTATGTGCAAATTGGATTTTGTTAA
TTATTTTCTTCTATTAACTCATAGATTCAACTTTCCTGCCATGATTCCTC
TATGGGTAAGtcaactaaaatatttattaaaatcaGCGACTTGGTTGTAT
TGTTGATTTTACATGTTGGGCAATTATTTTCAAACCGACCattattaata
caataatgaccggttagtgagggctgtactgagaaatattgcccgaggtc
aagtaacgaccaagcttgcgaggttgttgcgttgaccgagggcaatattt
tcagtacagcccgaaagaaaccggtcattattgtatttgttaaccgtttc
cttcagctttgattgatttttagcgctttatccaggaaaaatagcgaaat
aaagaagaaaaaacaagcgaaaagagataaaaaattgctataatttctga
cgtcagaaataaaaaatgagagaaatgatgtcaacgctggtcaacgcatt
gttcatttttctttgaaaaagtgacgtcacaatgaattttcctaacgacg
ggcaactctggacaatgtaggcccgtcgtcatgcgaaaagaaccaattgc
attgcgcaaaaagtcgtgtagcccgcttcgaaaaagtaaccggttaacaa
tgtaTTATAAACATAGCTAAATTTTCTCACGACCACTTACTATTTATCTT
TGAAAATAATTGCCTAACATGTAAAAGAGATCaaaatttctgacgtcaga
aataaaaaatgagagaaatgatgtcaacgtattgttcattttcctttgaa
aaagtgacgtcacaatgaattttcttaacgacgggcaactctgggcaGTA
TAGGCCCGTCGttatgcgaaaagaaccaattgcattgcacAACTGTGCAc
aaaaaagccgtgtagcccgcttcgaaaaagtaaccggttaacaatgatCT
GAAATACCCATACACTGGAGTATATTCTTTAATTCAATCCGCTGTTTTTT
ATAtcaattctttttatttttcttctttgagCTAATAAAAATTGCTTGCC
CCCTTCCCTCAATAATATCGAATATCCTTAGAAGGGGTAATAAAATTGTA
TTCATCAAATTATCTTTTCAGATGTTCCCAATGGCCCTTGTCTGTGGCAA
TACCTTCATCATGAAGCCATCAGAACAAGATCCAGGAGCAGCAATGTTAT
TGTGCGAGATGGCAATGGATTGTGGTATCCCACCAGGTGTTTTGAACGTC
ATCCACGGAACCAAACCAGCTGTTGATTTCTTGTGTACAGATCCTTCCAT
CAGAGCCATCTCTTTTGTTGGATCTGATCATGCTGTAAGCAATATTCTAT
CCAATTCTAACCTTTTAACATCTATTCCATTTTACATTATCTCATAGCAA
TGGTTCTCTTCATGCAGTTAAAGAATTCAGGCaagtcaattttttaaaat
gctttttttcagGGTCAATACATTTACGAAACAGGATCTGAGCATGGCAA
ACGAGTTCAATCTAATATGGTAGGTACACTCAACGTCAGTTCTTTCTAAC
TATTTTTACTcttcaaaagactttaaaaagtttaaaacccCAATACTCAC
ATACTTAGTTCTTTACAGCCAATAATAAGCTAAGAATAAGAGCCTTAACT
AGTGTATAGTAGTGTGAGACTGTAAATATCAAGCATGTTATGTAGATACT
TGTATAGTAGTGTGAGACTGTAAATATCAAGCATGTTATGGAGATACTTG
TATAGTAGTGTGAGACTGTAAATATCAAGCATGTTATGGAGANNNNNNNN
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TAGGGAATTCACTTTTACTCGCAATGGAAGACCGTCACAAGTTTATGGCG
CGAAGATGACGCGACAGACAAAAAAGCACAAGTCTCCTTCCCAAGAATGG
GTTGAGACATTATCGGATAAAAAACGAAATTAGACAAATTGATGGACGAA
ATTCAAATCAACTGTTTTTATTTATAACTTGACTTAAGTACCCTTCGTGA
AATTGACAATACGTTTTATTTATTGCTAGGGTCAATAttatttttcctaa
atttttttattcaggtgaaattttgtaataaaaatgaatttttagaaaat
aagagaaatgtgattttaaaattgaatcatgctttTTAAAACTTCCATGT
TGCATAAGTTCTGGAAGAGGCCACCTTGATAATGGTTTGCATTTTCCCGT
GTTACGACTTTTTGCAGAATTCTTGTTGCgaaagaaaatatattgaatTA
CTTCATGTCCAATTGCAATCAAAACATACTgaacaatagaaattttgaCG
TAAAGTAGATATAACAGGTCATATTTCAgtcattttttgtttacttttct
gtttgtagtttttttcaATGATTCTTATATGATAAACCTTTCTTTCTCTT
TGGTTTCTGTTAAGCAACACACATCTCCAGGTTTACATCATGGCTCAGCT
CTGTTCCCGTGTCTTCAAAACTGCTGCCAAAAGCAACGTAAGTTACACTC
CTAAACATATTTTTACCTGTATCCTTTTCACATACAAAGGAATGTAATGT
CCTACCTTTCATACACTTTTTCATTAATTCGGTTGCTCGATTACATAACT
TATCTCCAAAGCGAACTTCAATcaaaattctaactttcaacaAATATTTC
TACTCCAAGCTggaacacaacgttgtttcaacgtttatctgaTGTCTCAA
CGTCcctataacgttagatgaacgtttaaACAACATTGTTGGTTGCCAAC
TGGGCTATCTAAGAAAACACGTGCTTCTTTTTTAGAATGCTGGCATCTGG
AGACGATGTTACTCAGGAGCCACTGTAtgttaaatttatttgatacTTTC
TTGATCTCTGATTCTCAATATTTTCGCATTTCTTGCCTCCTATGAACAAC
ATGTAATGTTATCTAATTTATATTGCCTGTTACTGCTCGGTGACTCACTC
ATTAGAATCGAGTAAGAATCCTTCATTCATCTtatcctttttatttttaa
tcaagCCCACAACCAAATTGTTGATCAATGGAGAGTTTGTGGAGAGTANA
CAACCGTTTTCCAAATTAGGATAATATATGATAAATAGTACAGTAGCACA
GGTGTGACAGATTGCCAGTAGGTCTATATAAAAATTTGGGATTGATACCT
GATGAAGTTCTGAAAGAGGATGAATTATTGTGAAAAACAGTTGGTTTTAC
TTctttgttcgttcgttattCTGCAACTTGTTTTCTTTcggtttttctga
aaatttggaTTATATCTTTACTGTTCATCTCagaaatgttttgttttctc
CTATCCAGGTGATCAACCGAATACTGATGTTGGACCTGTCATCTCCAAAG
CCTCTCTAGAACGTGTTGAAAGGCTCATCCAATCTGGTATCGATCAGGGA
GCTAGTGTAAGAAtgtatttaattttaaaaatgtgaGAACTCAGCTTCAT
TTTACCATACATTAGCTTTTCCGTCTCGAAATTCAGCAAAATGTTAATAT
GGACTCAATTTTAAGTGAATTTCcattttcctttcaaaacatTGTTTTAT
TGACATCTTGACTTCTAAAATTCCTTATTTTCACATCTCTTGTGGTATCT
TTTGAAGCCATATAACTTATGGCAACCAAAACATTATTGTTAAATGCCAT
TACTTAGGTGGacgaattttattattttttattgcagTGTGATTTGGATG
GCCGTGGTGTCTCAGTACCTGGATTCGAGAGTGGAAACTTTGTCGGACCA
ACCATCTTATCAAACGTTACGGTAAGATTCTTCTCCATTTTACGATTTTC
ATTATATTTAATTAGTAAACATATTTCAAAATAGCGTTcaatttctaata
tttttttttctcgagagCTTAGAGATTTAAGAATCATAGTGTGGAAAGGG
GATCCCTTCttaaatgacccccccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtgcatcggagggcatatctataGTGCAG
AAAGGGGTTtgatccccccttcttaaatgaccccccaacctttaaaaatg
cctatcccccaaagATTTCGAGCTAAATtctttatggtaaaaagggaagg
gaaacagtaaagaaaaattaagtctggctaaaataataccactttttagt
gaaaataaagaacttcctttcatgcagaccaaatttcataacagtgctgg
aaaataatctacaatatatgtNAATTAGGAGTTTCTACATTATCGGGTAT
CAGGGGTCTCGTTTAGGCTTGGAAACGGCAAATTTTGCTGGTTCAAGGCA
CAACATTTGAGAATTcattctacaatcatggacttaaatgtttgagaaaa
aaactggaaaatgCTGGTAAAACAATGGAATGATCCCCCCCTTCCCCCAG
TGGCAATGTTTAGTACGAACGGCCTTCCCACTGACTTTTCCAATGCCTTT
AAACATTGCCACTCAACATACGTTCAGGCATTGCAGATTTGAGAGCCTAA
GCGTTATGCTTCCAAATACGTATAACTTAATCACTATTTTTGATCAGGCG
ACAAATGAGGTTGTCGGCATGTGTCCAGAAACTACACCAGAAGAATTAAG
AGCTGCAGGTGACAGTGCCCATGAAGCCTTTCAATCGTGGAGAAACACAT
CTGTTCTTACCAGACAACAAGTCATGctcaaatatcaacaaaagaTCAAA
GATAACATGGTATGTGAACACGTTCCTTTTTTTACGAACATccattcgga
tgttcttaacttttcgagtttgaagcttaaaaatgttcttaacatattct
tattttccccattttttgtgtatttttttccattttcctaagaaattgac
tGATTTCgagtccacgaagccttaaattgttcttaacttgttcttaacat
tttggccatcgaagacttatgttcttatatagtttgttcttataaaaaaa
catgtattcaaCTCGGTTTAATAGCATATCCtaacaattcaaaaaaatta
tcttgtGTCACTGTCGTCACCAAATCATTAGCGAGTTAGgaacagttgac
tctctctaattcgattttcaaaggggAATCTGATAATTGTCATCGAATAG
GGGAacttatcgaatagtagagtgtCGCTTATAAGAGTTTCCTGTTGACA
gggactttcaatattattgaataatagagcgtatcgaatagtagaacctC
GAATTAGTGAACGTTAACTGTATATGCAATTTTGAGGTCAGTAAATTGAC
ttaagcgatttggaataacccgcagttttgacctgcaaaatcgaggacga
taAAAGTGCCGATTTACCGTCGTCTTCAGTCAATATTAAAGATCTAGTAA
AGTTCGAAGTTAATCGTAAAACACACATACCCtgtaaatcctcgaataag
cgcccgggcgcttatttaatttttcagactctaAGGGGGGCGGGGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaat
ctgcttaaacttaactgtttcaaaggattgatttttcaaaaaaggatgaa
taaaagaaaaattagaaaaatccaattgacaatttctatcattttattct
taatcgctttctttctttttaagacacaagTATCTACTCAATATCTTAGT
AGGATCTCTTGGAATATGTTTCAGTCAAGTTTTTACAGTTTGAAAcctaa
tgaaaagaaaattacaGTATTTTTCTTCGTTTCTTCTTAGGATATTTTGG
CCAAGATGGTTACTCTTGAGAATGGAAAAACAATTGACGACGCTAAGGGC
AGCATTCTTCGTGGATTACGTAAGTCTTTACGTATTCTTACGTATTGTTG
CTTGCATGCTGGACACTGACTGAAACCCTTCCTCAAACACAATTAGAGCT
ACAAATTAGTACGGGCCTAACTAACCGAAAAAAtgaactgttttttttta
agattgatTATGGGCTATCATAATAGCCTGTAAAGAGcgcaaagtatttt
ttattgCAGTTAAAAAGTGCCATTCTTTGTCTGACCCGTTTTTTCTCTTG
TCTCTTGTTGCGCCTGTGTCGGATTGTTGTccatttttttcgtttttttc
acaCCTGGACCCTCACCAATTTGTATCTTGTATTACTGAAAATGTAGATA
GATATAGACACACCTTCGATTGTTCGCTTATGTTCATTGTAGTGTTGCCC
CACAGTCTAACACGCACGTAAGATAAAATTCTGATTTAaattctttacct
ttcagaGGTTGTTGAGCACGCTTGTTCAATCACATCACTTTTACAAGGAG
AGACAATGCAAGGAATCTCAAAAGATATGGACACACATTCTTACAGAGTT
CCTCTTGGTGTTTGTGGCGGTGTTTCAGCGTAAGTGGGTTTTACTCTGTT
TTATTGAAGATCTATACCGGGGGGAGGGAGGTTGTGGACGAACCTTTCCG
AGCAAAGAAATAATTCTTCAAAATGTGTGACTTTGAAAAGTTCTTCTTGA
TACCTTCAAATTGAAAGTGGTCGAACTAAAACCAGAGTCTTTTACCCCTC
GaagttttagaataatttttcaccccctggaaaaatagAAAACCTTTCCT
TAAACCCCCCGGAAGTTCTTCTTCGGATCACTACCTGGAAAAgtttgtcc
accccctgtatggatataaaataaaTGGCCCAATAGAGATCCCCTTAAAA
TGTCTGAGTGGTAAAGAACGCACAAATGAGAATGAGCCTTTTTGCACTTA
ACTCTCATAAGGTCATTGAGAATGATGAGACTATATGAGCTTCAAGACCA
AACCGGTTAAAACCAGACTTCTTTTGCTTGGTCTGTATCATAGGTGCATT
ATATAAAGAATGACCGGAATTTCCACCAAGGCTTTGTTAGATGTTGTAAC
ATAAAGTTTCTtgatattttcagattcaaCTTTCCTGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044527XLOC_044527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071680-exon-scaffold_63-1491911889:751548..751787TCONS_00071680-exon-scaffold_63-1491911889:751548..751787Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:751548..751787TCONS_00071680-exon-scaffold_63-1510915933:751548..751787Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:751548..751787TCONS_00071680-exon-scaffold_63-1575043694:751548..751787Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:755112..755147TCONS_00071680-exon-scaffold_63-1491911889:755112..755147Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:755112..755147TCONS_00071680-exon-scaffold_63-1510915933:755112..755147Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:755112..755147TCONS_00071680-exon-scaffold_63-1575043694:755112..755147Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:755482..755556TCONS_00071680-exon-scaffold_63-1491911889:755482..755556Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:755482..755556TCONS_00071680-exon-scaffold_63-1510915933:755482..755556Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:755482..755556TCONS_00071680-exon-scaffold_63-1575043694:755482..755556Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:755922..756083TCONS_00071680-exon-scaffold_63-1491911889:755922..756083Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:755922..756083TCONS_00071680-exon-scaffold_63-1510915933:755922..756083Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:755922..756083TCONS_00071680-exon-scaffold_63-1575043694:755922..756083Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:757980..758058TCONS_00071680-exon-scaffold_63-1491911889:757980..758058Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:757980..758058TCONS_00071680-exon-scaffold_63-1510915933:757980..758058Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:757980..758058TCONS_00071680-exon-scaffold_63-1575043694:757980..758058Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:761906..762029TCONS_00071680-exon-scaffold_63-1491911889:761906..762029Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:761906..762029TCONS_00071680-exon-scaffold_63-1510915933:761906..762029Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:761906..762029TCONS_00071680-exon-scaffold_63-1575043694:761906..762029Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1491911889:777571..777587TCONS_00071680-exon-scaffold_63-1491911889:777571..777587Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1510915933:777571..777587TCONS_00071680-exon-scaffold_63-1510915933:777571..777587Clytia hemisphaericaexon
TCONS_00071680-exon-scaffold_63-1575043694:777571..777587TCONS_00071680-exon-scaffold_63-1575043694:777571..777587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:751548..777587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
576.252	579.592	706.733	685.156	520.219	409.879	234.357	262.676	139.352	172.888	94.0044	159.337	0	0	0	0	19.0481	30.8663	0.452218	0	0	0	45.7002	37.0786	51.4831	101.839	111.952	53.564	0	0.127014
Blast
[Close]
BLAST of TCONS_00071680 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.243e-64
Identity = 93/152 (61.18%), Postives = 118/152 (77.63%), Query Frame = 1 
Query:  277 PTAKLLINGEFIDSKTDNWIPVTNPATNEVVSMCPETTPQEMKAAADSASLAFETWKDSSILARQSIMFKYQQKIKDNMDILAKSITLENGKTFSDAEGELLRGLQVVEHACSITSLQLGETMPGISKDMDTHSYRVPLGVCSGITPFNFPA 732
            PT KL I G+F++SK+D WI + NPATNEV+   P+ T  EM AA  S   AF  W D+S+L+RQ ++ +YQQ IK+N+  +AK ITLE GKT +DAEG++ RGLQVVEHACS+TSL +GETMP I+KDMD +SYR+PLGVC+GI PFNFPA
Sbjct:   38 PTVKLFIGGKFVESKSDKWIDIHNPATNEVIGRVPQATKAEMDAAIASCKRAFPAWADTSVLSRQQVLLRYQQLIKENLKEIAKLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMMGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPA 189
The following BLAST results are available for this feature:
BLAST of TCONS_00071680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMSA2.243e-6461.18Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
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