TCONS_00071678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071678
Unique NameTCONS_00071678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071678 ID=TCONS_00071678|Name=TCONS_00071678|organism=Clytia hemisphaerica|type=transcript|length=2347bp
GCGGAAGTTTAATATatgatttctgaaaaatatttcatatttcaatattt
catttcatGTGTGTTTATAGCGGCTTGTAAGGATATAACGACTTTAATTG
AACTAATACGTATaagaataacaaaaagaaatatttcttctgTATAAATC
GATTGTACTCATTTTGGGAATGATAATAGAAGAGATAGATGTTCTCGCTT
GGTGGTTGTAACCAGGAAGCCAAAGCTTTACAAGCTTTCGCATTAACTTT
GCTGCAGAAATGAAGGCGTCAAAATGTCTTCGTGTGATGCTTTGCGTTGC
CGCATTGGCAACTTTATGTCATGGTGGGAGTTTAAAGAAGCGTCTATTTG
GTGCTTTAAAGAAACTTGGCATGGACGCTGTCAGCAGTTACGATCCTACT
CCGGATGTCAAAGAGAACGTTCTTAATCCAACCAAAGGACGACGTGTTTA
TTCAGAAGCAAAACATCGATTTGAATTGCAAAGAGAACGTCTAGCTGGAT
TTAAGGATCCAACCGTAGTTGAAGGAGATCTGAAGAACTTATCACCAGCC
ATCAAGAATTTGATCAATGGCAAAGCAACAAAGAGAGAAATTATGTCAGC
GGTAAAATGGCCAGTTGAACGAGATGGGGATGACAAACCCGTTGTTAACA
TACCTTACGTCAACGATGGACTTAGTGACAATGGTAAACAAGCGCTAGAT
GCTGCTATTGAAGATCTCAAACAATTCACGTGTATTCGATTAGCACCAAG
ATCCTCACAAGCTGACTACATTCGATTCTTCAAGGGAGAAGGATGTTTTT
CAACAATCGGTCGAACTGGAGGCAAGCAAGATCTTTCCATTGGTGGCGGT
TGCGGGTACAAAGGAACCGTGCTCCATGAAATCATGCATGCTTTAGGATT
CTTCCATGAACATACCAGACCTGACCGTGACGATCACATTATTgtcaaat
ttgagaatatcatcGATAATATGGAATTCAACTTCAAGAAATATCCACAT
AATCTTGTCACTGACTTCAATGCACCttatGATCTTCACTCGGTCACTCA
TTACAATCAGTATGCATTCAGTACTGGTGTCGGTGTCCAAAGTATCCAGC
CTAAAGATCCAAGTTTCGATGTCAACAGCATGGGACAACGTTTTGGTATG
AGTGTCACTGATGCCGCTCAAATTCGTGCTGCTTATTGTGAACAACCCTT
CACTACAACAACAACCAGCACAACGACCACTATTCCACCTCCTCCAGTAC
TACCTACTACTTCCACCACCACTTTAGATCCTGATCTTCTGAACCCACCA
ACAACCACCACAACCACATTAGTCCCACCCCTCCTTCCAACGACAACTAC
AACCTTAGTCCCACCTTTGGATACCACCACCACGACTACCACCTTGGTCC
CACCCCTCCTTCCAACCACCACTACAACTACCACTTTAATCCCACCCATC
CCAGTCTTACCCACTACCTCCACCACGACCTTAGATCCTGATCTcctcaa
aacaacaacaacaacaactttaCCAGGACAGACTACCATCTCAACGACCA
CCTCTACCACACCAGTCCCTGGAGAAGAAAACGGCTGTCCAATGCCTCCC
TGTGAACAATGTCAGAATCCAGCATGCGGTCAACAGCAAGGGGGTCAGTG
CCCTTACCAAGCACCATGTTGGCCATCAGACTTTATGTGGTCAAATACTG
GATTTCCACAGACTTGTGGTTGCAACGGTGATCAACAACAATCTCAAGac
cagcaacaacaacaaggcCAAGATACCAACAATAATGATGGTCCAACTGA
ACCAGCCAAAGATGAGAATGATAAACGATGCAATATGTGTAAATGTcttt
caatcaaatcaaaatcgACACCAAAATCATGGGAACATAACCATTTTTGT
TACAAACCAGGAAGTCATGAtccaaacttcaaaatattaagaaacgGAGA
TATTGCCGGAAAACGATGCTTGTTGATTGATGACTCAAAAGAATCGGACA
ACCTTCatctttgttttaataaatCGGCACCGTATGATTTGTCATGGTCT
GACGTCGACCAGACGGATGTTGATGGAAAATCGCGATGTTTGAAGATGGA
AAACCCACATGATTGGGCATGGGGAAAACAGAAGTTCCTTTGCCAATCAC
CACCAAactaaaatcaaaaagatttgtttcacgtcattttttaactttta
caaCTTATGCatatttgttttgttcattttcaacaaaagaaattattttt
gatataaTGAATTGTAAATAAAAAGAACTATAAAATATAACTTCTTTttg
agttttccaaaaaattgagtcAGTGATCCTAAGATATCTTGGCATCC
Run BLAST on NCBI

transcript from alignment at scaffold_63:736270..749336+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071678 ID=TCONS_00071678|Name=TCONS_00071678|organism=Clytia hemisphaerica|type=transcript|length=13067bp|location=Sequence derived from alignment at scaffold_63:736270..749336+ (Clytia hemisphaerica)
GCGGAAGTTTAATATatgatttctgaaaaatatttcatatttcaatattt
catttcatGTGTGTTTATAGCGGCTTGTAAGGATATAACGACTTTAATTG
AACTAATACGTATaagaataacaaaaagaaatatttcttctgTATAAATC
GATTGTACTCATTTTGGGAATGATAATAGAAGAGATAGATGTTCTCGCTT
GGTGGTTGTAACCAGGAAGCCAAAGCTTTACAAGCTTTCGCATTAACTTT
GCTGCAGGtttgtgtttttgtttgttttttggtaACCCAAAAGTCAATGa
attataagcccgaagggctagaatcgaatctccttggtaggatttgaagc
caacaaatcctaccaaagttgcgcggcttAGCCTGGTTTAGTCCGTCATT
AAAAATACGgtgcatattttaaggcttcactttttcttggctgcgaaagg
ttagagattcgatTCTTGCCCTTCGGTAGTGTATCTTTTTTCTCAGGCAG
TGCCCCCCCATCGGTCGATTTTTTTGGGGCGCTGGAAAAAAAGGGCAACT
TTATCGTTCCAAGCTAAAAAGATCTACtgatggttttagagtgcaatttt
ttacattgaatttcgaatttgaaagaaaagtcCATTTCCCAGTGGAGCTG
AAATCGTAGGTTAGCTTTTTCACACGGCTGACTAAATTTTGGtcgaattt
tccagtggggcagAGGTGCCACTGGaactgtgacacaggggtgtatgttT
TTCACTGTTATGCGTTTCAGTGTTTAAATTCGGATGATTTTTACTGCATA
TATCTAATAGAAATTTCTCCTCCAATAGCCATAAAAGTGCTATCGAATTT
TATCTCACCATGCAATATTCCTTTAgataaatacacgtttttttctttat
tagaacccagtttataaagAACATTCAGGCTGAAATTAGTCGANATGGCA
GAAGAATTAACAACAGAAATTTGCAATcttagaatttaattttccaCATC
CCACATGTAGGATATATCTTTCGAATCTTACTAGTGCACCTTCTCTGTCC
TACTCTTTGTCCTTCTGACTTCCTTTTAATacaattatgtttttgattca
ctttcattttccctTACTCTCTAGAAATGAAGGCGTCAAAATGTCTTCGT
GTGATGCTTTGCGTTGCCGCATTGGCAACTTTATGTCATGGTGGGAGTTT
AAAGAAGCGTCTATTTGGTGCTTTAAAGAAACTTGGCATGGACGCTGTCA
GCAGTTACGATCCTACTCCGGATGTCAAAGAGAACGTTCTTAATCCAACC
AAAGGTATCGTCCTATGTTTATATTTACTTACTGGCTAGCCTGGGGTCCA
CTTAATACTTTTTACTGGCTAGCCTGGGGTCCACTTAAtacttttttata
gactggatggttCGATTAAGTGGCCCAGTAGTATGTCGTAacatgctttt
gcttaggcggactgtaaaaccgTCCgtcagattttagttgttttttgtaa
ggtaaaaacagtatgaagcaatgtctttatttgagaataagagattacaa
atctgttattgatgtttggtTCAACTCCTAGTAGcttattttgctatttt
gaattttcatgtCTTCAAAATGGCGACTTCGTTAATTGATTCTAATCTAC
TTCACTGTACTCAGCGGCATAGAGAATTATCGGAAAGCAAAGTTCaacca
gaagtagactctagtcaaGGCCTAAAAACAAGGTAACAACTTCAGGTCAA
GTATTTAAAGGAAATAGGTTAACATTTGAAAAGAAACTAGAAAATTCATG
TAGAGAATTTGACAGGTTCCtgacattcaaaaaatttgattttcacgata
gGCTCCCATTGGTTTGCGTGATAGCGCATTATCAAATTTGATCTGCATTT
TTACTGTGCAGATTTATTggaaatggtaaaaataatgttcccaaaaaaag
ttttagaTTCATCATAAATTTACTTTCTCATAGGACGACGTGTTTATTCA
GAAGCAAAACATCGATTTGAATTGCAAAGAGAACGTCTAGGTAAcatatt
tgaagtattttacCAATTATCTTTCTTGCATCCATCTTTGCAAAGACCTC
TATCTAAATGCCACTTGGTACcatcatttttccaaaaataaaaatgaccG
AAATGTTTTGAGAAATATACTTtaaactacaatcatggtccaCACGAATT
CTCAAACCACAAACGATTAGGGAGCGCTCTAAGTTAGTTTGGAAGGgtaa
agttttaactctgatagttttttaacgctagacttaagaccttaggatct
gaggatccaacagttcaaaaatggtccaataaggctcagaatataacctg
gaagtctataaacccgtgccaaattgaaatatccgattaaatttaagaga
tggcccaaaattgTCTCTCTTGCTCAAActcgaaatttcgaaaaacgagg
aaataggctaaattctcaatatattttgaccatgattgagAGAGGTAAAG
ACACTATTAGAAGATAGGTATGTTTTCTGCAAATAaaaattgttcaattt
tttAGATATTATTTAGATCGATTGAAATCATTAACATTTTGTGTAGAAAC
CTCTTCGACAGAAACATCCAAGCTTTCCTAGTATATTTGATTTCCAGCTA
CTCCGCCGTTAagtatcccagctggcacacaatgttgtttcaacgttcag
cTAACAATATCTGGACGTTGAGAACATttgataaacgttgaaacaaacGT
TGTTTAACAACTGAGATGAATAGAAATGTACTTTCCTTCGATTTTTGGAG
AATATCCATTTTTTAGCATATTAAATCCATCATTTTTTCGTTTTAGCTGG
ATTTAAGGATCCAACCGTAGTTGAAGGAGATCTGAAGAACTTATCACCAG
CCATCAAGAATTTGATCAATGGCAAAGCAACAAAGAGAGAAATTATGTCA
GCGGTAAAATGGCCAGTTGAACGAGATGGGGATGACAAACCCGTTGTTAA
CATACCTTACGTCAACGATGGACTTAGTAAATATTTTATACATTAGACTC
TATTACTGGATATTTCTATATTATATTGTCTAGTACTTGgaggcaaaaaa
acatatcCTCAAAAAATGTTTCGTTCCCCTGTTATGCGCAGTTTCCTATT
TTGTTtgcgcacttttgtaattttgcagttttttcgcaaaaattacaaaa
gttcgcaaaaaaaattacaaaactgcgcagAAAACTACAAAAGTGCTTTA
ACTTATTATTTCTAACCATTTAAAAAGGTGACAATGGTAAACAAGCGCTA
GATGCTGCTATTGAAGATCTCAAACAATTCACGTGTATTCGATTAGCACC
AAGAACCTCACAAGCTGACTACATTCGATTCTTCAAGGGAGAAGGGTAAG
GTNGGCACCAAGATCCTCACAAGCTGACTACATTCGATTCTTCAAGGGAG
AAGGGTAAGGTGCTCATATAATTTATTTTAGATGAGGTTATTGCCAGACT
TCACTTCGGATCaatattgtttttcaaaaatgttttccagAGAAATATTC
TACAACGAACTAAAGGTTTCATTCCGGGGGcgggggacttaggcaaaatt
gggtacggagACGTGTTGCTAGTCAGGGTCCTTGACAAGGATCCAGATTT
GCCaaatattcatatctgacagggtctatttttcTAACTTCAGCGGTACG
TCCCCGTTGGCAGTCAAGGTCAGTGCCTCTCCCGGGTCTCATTTTATAAT
CAGCACGATAATACCATTGTTATAGAAGAAgcagattttttcttcttcgt
ttttcatgtTGTTACAaaggtttttgaatttttctttttgataattttcc
acTCCTGATTACCTTATATTGGGACAGACTTTTGATAGATCTTCCATTTC
CATGATATTAGCACACCGTTTGATCATCTCATTTAAGGCTGAACTCTCTT
AGTAAAATTAATCCGAGTATTGTCTGATAATTCGAGTTTTTACCATAGAT
TTCTGTATAGCCCGAAGGGCAAGATGtagtgctttaagctcttccgagca
aaaaagtgaatatcgcaaaagatattgttgctattgttttctaAAACCTG
TAATGTTCttttgtaatgtcacgtgacttaggtaggatttcctatctAAC
CTCAGTACACTTTTtagacatctagcccttcgggatttataaatctatga
tctATTTTTACACTTCTCGAAATCAAATGTTTTCATGATCCAGGCGCGCT
TTTTATCCCTTTCCGAATTCTTTAAAAACTGCTCTCAATTCTCCAAAATA
AAGAGTTTAGAGTTCCCTGTGCAAGCGTTAGAGTTATAGAGGATAAGGAc
aatttacattttatttcTAGATGTTTTTCAACAATCGGTCGAACTGGAGG
CAAGCAAGATCTTTCCATTGGTGGCGGTTGCGGGTACAAAGGAACCGTGC
TCCATGAAATCATGCATGCTTTAGGTAAGTTGTTGGAAAGGACATGAATG
ACTCTATATGATTTAAGCttcttttattcgaatctttctctaaattAAAC
TAAACCATAGGTTTTATTCTGTAATTCAGATATTCCAGTAATTCGAAGAA
GATATAAGCTTCGTAAAGATCAAATTATAGAGATTCAACTGTATGCTTTA
CATCTGCCTACCTGCCAATTCAAATATGTGTCACACACCCAATGGGATCC
Aacccccactggaaaatttagcaaaaatttcgtccccggtctggaaaaat
accctaaaatttcatcccctttggaaagtcaatgtttaaaaaattgcact
ccaaaaccatctccactgaattttttaaccttggaacaatctATTTATGC
tgttgggatttcaataggagtttttatcctcactgagaaaaaagttccac
cggggctgtgagacagggatgtatttAACtaaccaatatttttttctgtt
atTCTAGGATTCTTCCATGAACATACCAGACCTGACCGTAAGTGACTTTC
CTTAATTATATTACCAAAACGTCAAAGCGAGATCAAGAAGACAGTCTCTT
AGTTTAACGTAGTATTTATATACAAAtagttattttaaaatttcaaaaaa
tcaattttgaaaaagaaattgagattttgaaaacaattgtACACAGGAAA
GACTAAGGAAAATCATAATATCGTACCCAAAACCAAATGAACCACTTTTT
CATTTTACTGTTAGACATGATACAACCCGCTATCATAATCATAAAAAGGT
GAACTAAGGAACTGGgttcgaatttgaaaaaaaatcaattataaAGTCAA
GTcacaaattttaaaccttttttttaataGGTGACGATCACATTATTgtc
aaatttgagaatatcatcGATAGTAAGTCAACCAACTGAGGACCACTTAA
CCTCGTTCCTAGTCTCTCCTTATTCATAGCGCATGGGTTTTCTCTGGCGT
TCATCAGTAAAGTAAATAAATTCTTGGATACATGGAGACATATGATACTA
TGTTTCAATTGCATAAGTCTTGACCCGAAAGTACACAAGATTTCTATAAC
GCCCTATTTCTTGAACCTGAGAATCTGTTGGTAAAATGGTATATCTTTTG
AGATTGATAAAACTGATCACGAATTAAATCATTACAAATATTCCTGAAAT
AGTCTCTCAGCAAGCGGCATAATGAGTGTTTAGGCCGGTCTCCAATTGCA
CGCGCTGCGACCACACTTTCTCGAGAAAAGTTTCCaagctattggtcaaa
agaaaaatgaaataattccATTAGCGTGatttgacgtaacggttgaaaaa
agttgaaatgtattcaacttttttttcgagctcGCACTAAATTTTTacga
cgtaatcttttttccgaGCAAAAGGGGTcgaagccaaaaggtgcgattgc
agcgcgcacaaaggagaccggcctttacttGAAGGATGGATCCGGAACAA
AGCTTCGGAGAAACAAAGTCGAAAAGTACAAACCTTTCTAACTATTCGTT
ACTCAATGTAATATACACCCTTATTTCAATATATCGTTGGAGCTTTTTCC
AAAAGTGGtgttgaaaatttctatcgagtTTCCAGGACGGAAATCTATCA
TTCCAGCTAAAAACGAAAGTGAGACTGAAATTGTAGGGTGGAGTGACCAC
CAAATCTGTGACATGAGGGTTGTTAAAATTGTTGGTCTTGCCTAAAGGCC
TTTCATCGATCGCACGAGCGTGCACGCTAGGCCaatattcttaaaataga
tttggccgcacactccgcgcgatcaatgtttgatttccatcaaaaacata
cACAATCTATATgcttacatttttttgtttactcagcagtttttctcttt
cttgattggtttaaaaattaTCGATTGAGAAGTGCGCTCCTGTACgctaa
aaaaagttgaaaattgtcAGGAAAATTTAATTCGTGACGTCAATAggcta
ttttaggaaattttgcccTAGCGTGCCCGCTtgcgcgatcgatggaaaca
ggccttaaAACATATGAGTTTATCTGTCATCATTACATAATATTCTAGAT
ATGGAATTCAACTTCAAGAAATATCCACATAATCTTGTCACTGACTTCAA
TGCACCGTAAGAATGTTTATACTACTTTTCTGACTGAAGTATTCCGTGAT
TTTGTAATTCAACGCGTACTATGGGATATGAGGAAAAAATCTGAATTAAT
CTCACTCTAATTCTTAACATGTAGCAAAAATTTAGTCCTAATTAACTGTT
ATCTAACTACTACGCGTGGTCTTGCACTTCAAAGAAACTTTAGCTTTACC
GAGAAATGAGAGAATGGAAGCAGATTCGAGTATCTCCTGTAACcctatga
aaaaacttttagaaaaagtcaatttcataCCTAGAGCCACTTGcacaact
ttttgattttactaaaTAAAAAAAGCGAACAAAGGGTCTGGattcgagtt
tgaaaaatgatatatttttattttttagttatGATCTTCACTCGGTCACT
CATTACAATCAGTATGCATTCAGTACTGGTGTCGGTGTCCAAAGTATCCA
GCCTAAAGATCCAAGTTTCGATGTCAACAGCATGGGACAACGTTTTGGTA
TGAGTGTCACTGATGCCGCTCAAATTCGTGCTGCTTATGTAAGATTTACT
CTGTCTGTACAGTTTTATTAATgagattaattttgaaaaaaatcggaTAT
ATAACATAGAGTTTTCAAGTTAATTTTTATTCGTCGCACATGTAGAATTA
TAtaaaagtctgtctcgaaataatttgcagctggagaaaaaaatggctgt
aacttttgatagaattcgaaccaagttgcggttttgtgctcgttaaaaag
atattcgtgagtggaatattatcaagtaaaaaaattgagaaaaaaaaagg
aaaatgaaaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtat
ctttttaacgagcacaaaaccacagcttgattcgaattctatcaaaagtt
acagctatttttttctccagctgcaaattatttcgagacagactttagta
accTCTTGtaggaaaacaaaaatatttttgagctaAGATCCTTTTTGAGA
GTTCCAACGCATTTCTTACAaagatttaatgaaaatttaagCCCACCTCA
ATTAATTTTATTTATAGAGTTTTACAGTTAGGCACACTGGGCCTCTAACC
CACTCTTCTTACAATCATGTTGTTTCCGTCGTGAATTTCTTCAAATAGAA
TTTAGTCCTATAGGACTACCTCTCAATTTCCATATATCACTCTTGTCTTT
TTCTTTCCATGTTTTTTGCTTTATGATGCCATTGTTTTATTATCTCGCGT
TCTTTCCTTGAAAAGTCGTCTGATACTCTGAAATCATCTTTATCTAGTTT
GTGGGCTGATACAATTCTAATCCTTTCTTCTTCACTCTCGAGAGTAACTT
CTAATGGTCTCCATCGTTCATTTGTATACATTTATGCGATCTACCTTGAT
TATCGTCACATCGAAACCcatttgtttttcaatattCTTTCTATAAAATC
TTTGTAACCAACTCGTTGCTCTTCTTCGTTTTCGTGCTTGTTTTCACCTA
AATCATGCACCATGATGTTGCACTTGGTTGATTTGAGCCAACGCTCCTCT
TCGTTTGATGAAACTTTTTATAGTAACCTCTTGTTTTTGTAGATCTTCTT
TGGTGACTTCTGCATAtgattgttgttttttgtttctgtGTTGTTGAGCT
GTGTTTCAGATCATTTGTTGTTCCGTTCTTTGTTCACgtcttttttattc
attagcTTCTCGACTTTCCTTTCTAGAGAGGTTATTCTCTCGTTGAAACC
TAATTTCAATCCATGATGTTCATCTTTATTTGCTTCTTTCGTTGTGATGT
TACTGCAAGCTTTTGGTCTGCTTGTTTTAATCCTCTCAAGTAAGAGTGGC
GTTATTGGAACACAATTTCCACATTCGAAGCGCCGGCTTTCATATTGCAG
ACAAAGCTGAATCTGATTGGCCGGGAACTCAGAGCCCGAgggaggggtac
tagggttggcaaatgaggggtatgtgcagacgggacctccgaaaaccgac
ccttagagaaactgatttttgctgaaaaggtgacccttagagagactttt
tgaattctttttttcgatttttgaaaaaagtcataaccttagagagactt
tattgcaatattttctctggaaatcaaaaaatttcctaaaaatcctggat
ttaccgacccttagagagactaatttaaaactttctgagttttccgaccc
ttagagagactttgaaagatgaaaaaccgacccttaccgtccgcacatac
ccatcatccatttttgcctaagtacccccccccccccgggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccggggctcaGA
GCAAGCATAATGGACAAGTCTATCACATCTCTTACATTGTAAGGTGTCGC
TATCTGCTATGATGGTGTTTGTTTTAAACAGTTATTGGGTGTGCAATATC
cataattttgttgaatttccttTTCAGAATTTTCGTCGATTTCCGCCATA
TTATTGCATTTTCAGGATCGTGGCAGCACAGAAAAAGTTTTacgtcaaaa
ataatttaatccAATGTTTTTTCCTTTACAAAATTCAGTGTGAACAACCC
TTCACTACAACAACAACCAGCACAACGACCACTATTCCACCTCCTCCAGT
ACTACCTACTACTTCCACCACCACTTTAGATCCTGATCTTCTGAACCCAC
CAACAACCACCACAACCACATTAGTCCCACCCCTCCTTCCAACGACAACT
ACAACCTTAGTCCCACCTTTGGATACCACCACCACGACTACCACCTTGGT
CCCACCCCTCCTTCCAACCACCACTACAACTACCACTTTAATCCCACCCA
TCCCAGTCTTACCCACTACCTCCACCACGACCTTAGATCCTGATCTcctc
aaaacaacaacaacaacaactttaCCAGGACAGACTACCATCTCAACGAC
CACCTCTACCACACCAGTCCCTGGAGAAGAAAACGGCTGTCCAATGCCTC
CCTGTGAACAATGTCAGAATCCAGCATGCGGTCAACAGCAAGGGGGTCAG
TGCCCTTACCAAGGTACAAAATTCAATACTCGATTGTTAAGTATCAAATT
GAGAATGAAAGATTGAATAATCAAGAAAATCACGTTTTGTCAGTTTAATT
ACAAATGGAAAATAAAGAGAATGTCATTAGCTTTTAACTTTATAATCACT
GAGAGCTGACGATGAAGCTAAGAGTTGCGAGTCATGGATTAGGATGTCTA
GCTTTTCTCCAATGGTGTTGACTATTGAGAAAAGGTTAAACATTCTAAAT
CTATGTGGTATCCCTATCATTTCTAACTACCTTTTATGACTTCAACTCTA
GCACCATGTTGGCCATCAGACTTTATGTGGTCAAATACTGGATTTCCACA
GACTTGTGGTTGCAACGGTGATCAACAACAATCTCAAGaccagcaacaac
aacaaggcCAAGATACCAACAATAATGATGGTCCAACTGAACCAGCCAAA
GATGAGAATGATAAACGATGCAATATGTGTAAATGTctttcaatcaaatc
aaaatcgACACCAAAATCATGGGAACATAACCATTTTTGTTACAAACCAG
GAAGTCATGAtccaaacttcaaaatattaagaaacgGTAAGTTTTTTAAC
AgtcctgtctcagtgccccggtggaaaGAACTTATTCCCTTAGGCAAGGc
caatttgttgttttacaggcCAAGCTATCCAAAAAAGAGGTTGGTCGGTT
ggcgaaaaagtaaaaaaggtagaatttcacctataaaatctcctaaaaag
gcagcaaaaactacttctttttgataaaaatgcgaaatagaaaataataa
GGTACAAAAAGGTCGATTCAtggataaattgaaaaattgaacataaaatt
gtcaaaaccttggaaaaactaccaaaactttgaaaagcAACGATAACAAA
AATGTACTACCGAAATCAATTTcgtttttatttcgatttttggaatatca
ggatcggtcgggcccgtaaaacaataactgatcaaattggtctcgtctTG
GTGGGGATTAAAATTTATACCGAAAATTTGTAGATatatttctatcaaaa
tatTCAGTGGATGGTTTTGCAATATCAGAGTTGGCTTGGtatgggctatt
tttcgctattttttgggtgatgataatttttagtgattttcgtGGTCGTG
ATGAAAACAGATAATTTAGCGTTATAGCGTGATGAGAGGTATCACTTGGG
GAGTCTCATCTAAACCCGGCACatattttgtttgataaatctAATTATTT
TGTTTCTTCACCGACTTTTTTATCACTTTGTTTGATACAGGAGATATTGC
CGGNTGGGTGAAGTTTTAGTGATTTTCGTGGTCGTGATGAAAACAGATAA
TTTAGTACCGTGCAAAGCACatgtcaaaatcatatattgacgctgtgccg
acgaatcgagattctattcatcgcgcaatcaacaaagacaaaagtaacct
TGACGACCATTCAAGATCTtagatgaagttcaaagttgatgtttttattc
ccgtcgttgaaagcacaactaaaaaatattatcaatgctttttaaaaata
gtcagtgatagagaatcataacataaagtctgtctattatttcgattcaa
ttaaagtgacatttccataattaatagtttagttattactgttatacatt
tggggatcatgtaaaagatttctttcgaaagaaactcacttcaattacac
ttggaggtttctggggaattcgtaaatagNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagtctgctagacat
taataaggtaatatttgctcttcatctttgattctttctacagttataag
attgacacatgcgcaataaaatttcattattggtcttcagaggttaatat
attctttgaaaacttaacctctgatactcagggtaataaTTTAGCGTTAT
AAGCGTGATGAGAGTTATCACTTGGGGAGCCTCATCTAAACCCGGCACat
attttgtttgataaatctAATTATTTTGTTTCTTCACCGACTTTTTTATC
ACTTTGTTTGATACAGGAGATATTGCCGGAAAACGATGCTTGTTGATTGA
TGACTCAAAAGAATCGGACAACCTTCatctttgttttaataaatCGGCAC
CGTATGATTTGTCATGGTCTGACGTCGACCAGACGGATGTTGATGGAAAA
TCGCGATGTTTGAAGATGGAAAACCCACATGATTGGGCATGGGGAAAACA
GAAGTTCCTTTGCCAATCACCACCAAactaaaatcaaaaagatttgtttc
acgtcattttttaacttttacaaCTTATGCatatttgttttgttcatttt
caacaaaagaaattatttttgatataaTGAATTGTAAATAAAAAGAACTA
TAAAATATAACTTCTTTttgagttttccaaaaaattgagtcAGTGATCCT
AAGATATCTTGGCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044526XLOC_044526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071678-exon-scaffold_63-1491911889:736270..736526TCONS_00071678-exon-scaffold_63-1491911889:736270..736526Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:736270..736526TCONS_00071678-exon-scaffold_63-1510915933:736270..736526Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:736270..736526TCONS_00071678-exon-scaffold_63-1575043694:736270..736526Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:737394..737573TCONS_00071678-exon-scaffold_63-1491911889:737394..737573Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:737394..737573TCONS_00071678-exon-scaffold_63-1510915933:737394..737573Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:737394..737573TCONS_00071678-exon-scaffold_63-1575043694:737394..737573Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:738253..738309TCONS_00071678-exon-scaffold_63-1491911889:738253..738309Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:738253..738309TCONS_00071678-exon-scaffold_63-1510915933:738253..738309Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:738253..738309TCONS_00071678-exon-scaffold_63-1575043694:738253..738309Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:739116..739295TCONS_00071678-exon-scaffold_63-1491911889:739116..739295Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:739116..739295TCONS_00071678-exon-scaffold_63-1510915933:739116..739295Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:739116..739295TCONS_00071678-exon-scaffold_63-1575043694:739116..739295Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:739547..739614TCONS_00071678-exon-scaffold_63-1491911889:739547..739614Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:739547..739614TCONS_00071678-exon-scaffold_63-1510915933:739547..739614Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:739547..739614TCONS_00071678-exon-scaffold_63-1575043694:739547..739614Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:739674..739723TCONS_00071678-exon-scaffold_63-1491911889:739674..739723Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:739674..739723TCONS_00071678-exon-scaffold_63-1510915933:739674..739723Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:739674..739723TCONS_00071678-exon-scaffold_63-1575043694:739674..739723Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:740640..740743TCONS_00071678-exon-scaffold_63-1491911889:740640..740743Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:740640..740743TCONS_00071678-exon-scaffold_63-1510915933:740640..740743Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:740640..740743TCONS_00071678-exon-scaffold_63-1575043694:740640..740743Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:741227..741256TCONS_00071678-exon-scaffold_63-1491911889:741227..741256Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:741227..741256TCONS_00071678-exon-scaffold_63-1510915933:741227..741256Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:741227..741256TCONS_00071678-exon-scaffold_63-1575043694:741227..741256Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:741600..741641TCONS_00071678-exon-scaffold_63-1491911889:741600..741641Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:741600..741641TCONS_00071678-exon-scaffold_63-1510915933:741600..741641Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:741600..741641TCONS_00071678-exon-scaffold_63-1575043694:741600..741641Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:742818..742875TCONS_00071678-exon-scaffold_63-1491911889:742818..742875Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:742818..742875TCONS_00071678-exon-scaffold_63-1510915933:742818..742875Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:742818..742875TCONS_00071678-exon-scaffold_63-1575043694:742818..742875Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:743248..743407TCONS_00071678-exon-scaffold_63-1491911889:743248..743407Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:743248..743407TCONS_00071678-exon-scaffold_63-1510915933:743248..743407Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:743248..743407TCONS_00071678-exon-scaffold_63-1575043694:743248..743407Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:746358..746832TCONS_00071678-exon-scaffold_63-1491911889:746358..746832Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:746358..746832TCONS_00071678-exon-scaffold_63-1510915933:746358..746832Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:746358..746832TCONS_00071678-exon-scaffold_63-1575043694:746358..746832Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:747121..747405TCONS_00071678-exon-scaffold_63-1491911889:747121..747405Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:747121..747405TCONS_00071678-exon-scaffold_63-1510915933:747121..747405Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:747121..747405TCONS_00071678-exon-scaffold_63-1575043694:747121..747405Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1491911889:748936..749336TCONS_00071678-exon-scaffold_63-1491911889:748936..749336Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1510915933:748936..749336TCONS_00071678-exon-scaffold_63-1510915933:748936..749336Clytia hemisphaericaexon
TCONS_00071678-exon-scaffold_63-1575043694:748936..749336TCONS_00071678-exon-scaffold_63-1575043694:748936..749336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:736270..749336 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0331878	0.0377572	0.0313141	0	0.0223778	0	3.87289e-06	0	0	2.78574e-06	4.75454e-10	7.09622e-09	0	1.32086	5.98961	17.0385	8.42922	9.35894	0.0235196	0.00615288	5.62072	6.40922	5.06098	5.68515	0	0	1.13009	0.364248	0.0184179	0.0312749
Blast
[Close]
BLAST of TCONS_00071678 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.169e-35
Identity = 70/190 (36.84%), Postives = 108/190 (56.84%), Query Frame = 2 
Query:  620 RDGDDKPVVNIPYV-NDGLSDNGKQALDAAIEDLKQFTCIRLAPRSSQADYIRFFKGEGCFSTIGRTGGKQDLSIGGGCGYKGTVLHEIMHALGFFHEHTRPDRDDHIIVKFENIIDNMEFNFKKYPHNLVTDFNAPYDLHSVTHYNQYAFSTGVGVQSIQPKDPSFDVNSMGQRFGMSVTDAAQIRAAY 1186
            RD + +    IPY+  D L  N K A+  A E  +  +C+   P   ++ YI F + +GC+S +G     Q++SIG GC YK  + HEI+HALGF+HE +R DRDD++ + ++ I+   + NF  Y  +L+TD N PYD  S+ HY  ++F+    V +I  K P F+ + +GQR   S  D  ++   Y
Sbjct:   69 RDPNTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFN-SIIGQRLDFSAIDLERLNRMY 257
The following BLAST results are available for this feature:
BLAST of TCONS_00071678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A3.169e-3536.84Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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