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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071669 ID=TCONS_00071669|Name=TCONS_00071669|organism=Clytia hemisphaerica|type=transcript|length=5092bpRun BLAST on NCBI protein sequence of TCONS_00071669-protein >TCONS_00071669-protein ID=TCONS_00071669-protein|Name=TCONS_00071669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp MRYLIIIGQILVQFGLLFGVFDNDDKIKPQIYGSITDKFTATWSINKARERun BLAST on NCBI transcript from alignment at scaffold_63:700994..715738+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071669 ID=TCONS_00071669|Name=TCONS_00071669|organism=Clytia hemisphaerica|type=transcript|length=14745bp|location=Sequence derived from alignment at scaffold_63:700994..715738+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:700994..715738+ >TCONS_00071669 ID=TCONS_00071669|Name=TCONS_00071669|organism=Clytia hemisphaerica|type=CDS|length=25110bp|location=Sequence derived from alignment at scaffold_63:700994..715738+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071669 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 4.047e-28 Identity = 70/203 (34.48%), Postives = 107/203 (52.71%), Query Frame = 2
Query: 1730 IPYVFHETITEHKRGAIEAAIKDFHQFTVIRFAPRTNEPDYLNFIKDNGCWSFVGCQGGPQDISIGNGCGYRGTVIHQIMHALGFLHENTRTDRENYLTIDSNNIEEGFAHDFEKYENRMIYMNGVPANGDLTQSQNPGIQNAQLLKFNEYDYFSITHLGCHAFSTTSELKTMQAKDDEVDDNDLGQRNGFSHSDIERLKAAY 2338
IPY+ + + + +GAI A + F + + F P E Y+ F + +GCWS VG Q Q+ISIG GC Y+ + H+I+HALGF HE +RTDR++Y+ I + I G+ H+F+ Y++ +I P YDY S+ H +F+ + + T+ AK E ++ +GQR FS D+ERL Y
Sbjct: 79 IPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTP-----------------------YDYESLMHYQPFSFNKNASVPTITAKIPEF-NSIIGQRLDFSAIDLERLNRMY 257 The following BLAST results are available for this feature:
BLAST of TCONS_00071669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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