TCONS_00071661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071661
Unique NameTCONS_00071661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071661 ID=TCONS_00071661|Name=TCONS_00071661|organism=Clytia hemisphaerica|type=transcript|length=1332bp
tcagaaaaatataaaaaatgctGTAAAAAACAATATATCAAACTGGGTCT
GCTGTTTAGAAGAGAAAAATGGCTGGTTCAGCTTTGAAAAGATTGATGGC
TGAGTACAGGCAGCTGTTGTCAAATCCACCAGAAGGCATTCTTGCAGGAC
CTtcaaatgaagaaaacttttttgaatggGAAGCACTGATTGCtgggCCA
GAAGATACACCTTTTGATGGTGGTGTATTTCAAGCTAAGTTGAGTTTTCC
ACATGATTATCCATTGAGtccaccaaaaatgaagttcaccAGTGATGTTT
TTCATCCTAACAtttattCTGATGGACGTGTTTGTATATCTATTCTCCAT
GCTCCTGGTGACGACCCTATGGGGTATGAAACTAGTGCTGAGAGGTGGTC
GCCTGTTCAATCTGTGGAGAAAATCCTACTTTCAGTTGTTAGTATGCTCG
CAGAACCAAATGATGAAAGTCCTGCCAATGTTGATGCATCCaaaatatGG
CGTGAAAGCCGTGACCAATTTAACCGAATGGCTGATGAATGTGTCCGAAA
ATCACTTGGTATCACCAAAAAACTTCAATAAATCCAAAGAATGGGAAAAG
CAGTGCCGATACTTTCGTGATTACGTGATTGAAGATTTTGAAGTACATGA
TTGCGTgatcaacgtgatcgtgatagaaaggaaatttaacttgtaataac
gtgatttggaattttttttgtgtgaTAGCGTGACTTGAAAGGTGACTGGG
GGCCTCTATTATTGCTTGATTTCCAAACAATAATGGCAAACTGTAGACTC
ATTTTAAGGATGAACTCTCACGAGGCACACTGTATTTACAAAGCTTTTCA
ATTGCGCTAAGCCTAATACTTCTTTTGGGTCAGTAACTTTTATCGTGTAT
AATTTCAGACACTTTTTGGATTATCTCGAagtaaaaatagtttttaatcG
TGGGATTTTAGCCTCTTGCTACATCTCGGATTACATAACGTTTTGGCAGT
ACTCATTTCCTTTTCATAAAAGGGATCAATTTGTATTGTACTATGTCGAc
atatttgatttgttttgttcttttggCTGTATAAGGTGTTGTCGTTTTTG
AATGTCAATATTTGCTTTGGAATATGGTATACTTTTTTCATGACATcttg
aattattttttgatgTTCTAATCAAAGttataaatttcaaactcatttat
ACTCTTATTTTGTTGTTACCTTCGattcttttcaaaaagattattaGATC
CTCCTATTGTTTATTTTGCCAAAGGTGGTCAATACATTTAGGAACAAACT
GACGCATAATTGGACTTAAAATAATATAAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_63:623098..629048+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071661 ID=TCONS_00071661|Name=TCONS_00071661|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at scaffold_63:623098..629048+ (Clytia hemisphaerica)
tcagaaaaatataaaaaatgctGTAAAAAACAATATATCAAACTGGGTCT GCTGTTTAGAAGAGAAAAATGGCTGGTTCAGCTTTGAAAAGATTGATGGC TGAGTACAGGCGTAAGTAATTTTTGGCAGTTTTTGAACTTTCAGTGGTTT TGAGCCAGCTCTGTTTCTGAAATTCTTATGTGTTATTTTTTATACTTAAA GGATACCACTCCATGTGATTGTCAGGCAAAATAGGATGTGATTGTCATGC AAAATAGGCTACGTGCTTTTTCATTTCCAGTATTTTATTAATTACTCATG TATACAATTTTTACCTGGTGTCTTTTAGAGCTGTTGTCAAATCCACCAGA AGGCATTCTTGCAGGTTGATTCACCTTTATTTATTATTTGTGTTAACTTG TTGGGCATTAtaagaaatagtccgtgccccccccccNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCCGTCCCCCCCTTGTTGAGGATATTGGACATC CAGGTGGTAGGATCTTATAAGAGATTGAGTATATCCAGGGGGTACAGAAC ATAATGTGCCTGGATATCCGTTGGGTACAGGGTGAAAAGCCCTGAATATC CGGGGAGTATAGGTCAAAATGCACAGATATCCTCAACCCTTATGTCCGCT TTTTCAGGTCCGATATCCAAGGGGGTATTTATTTTTAAGTTGGACATACA GGGGGCTGGAAAGGCCCAATGCAAGTTTTATATTATAATCTTTTTCTGAA AGTAATGAACCAACGATTATAAGTTtcatatattctttgaaaatcataat caggctaaaacaaaataaaaaccacATTAAAAACTAGAAATGTTAAGCTA AAATGTActgaaaattaacttttttatcaCAATATATCAATAAGATTAAA CAGTTTTATAAGTGTTCTGCGAAATATTATATCCCTCCATTTTCACAGGA CCTtcaaatgaagaaaacttttttgaatggGAAGCACTGATTGCGTAAGT ACACTTCTCATTGCAGGCCTGGCCATAAACAAAACCTTGCGTGTGCCAAA GTAGCACTCTATGTTACAGATTATGGCGTGCTATTAGCATTCTCAAAGGA GATTTTGTACAAACTTGTATATTTTAGaagtgctattttagcactCGCAA ATCATTTTAGGTGTGTACCAGCGTGTGCGAGTGCAATAGCACGCCATACA GGGCCAGGCCTGCATTGCTTTTTTTATGTCAGAAGCCATCGCTTCATTTT AGCACTATTTTGTAGAAGGTAATATCTAAATTTAGTTTTAAAAGCCACAT GCAAAATGGAAATAGTTCTAGTAAAGATGAAATGCAAATGCTATGATCAA CCATCCCATCCTTTGATAGGCATAATACCTATGCTGCACTGCAGGAAAAC CTGGATCTCTCATAAAAAGTGAGATCCGCCAGTGAGATCCATGTCCATTC CAATAACCATGTTGCTTTTCTAGTTTCTTTTGCGAAAAATACTCTCACTC GTAAATTCATCTATTATCCAAAATCAATCTTTTccttgtttcattttttt tcagtgggCCAGAAGATACACCTTTTGATGGTGGTGTATTTCAAGCTAAG TTGAGTTTTCCACATGATTATCCATTGAGtccaccaaaaatgaagttcac cAGTGATGTTTTTCATCCTAACAGTAAGTCCATTGTGATATTGAAAATAC AATCTCCTCGTTTAAGCCTCAGTATATTTATCTAAAAATGATTTGGAGTA GCTGGGAATGTGAAAATGAAAGATTCAGTCAGGTTCAGTCAGGCATTCTT CTGTAACAtttcacttttaattttttttgctcaaattttgtgagGTAACT CCACATGGCGTGTATTTTTGGGGCAGAGGGTCAACTTTTGTTGATAATAC AAGCTTGAAGCCAAAATTTCAGTAAAATCAGACAAGTGGTTATACTGAAA GTGAGCACTGACCAGTCTGAAAAATACCAACTGCTTGTGACAAAATTGTG ACACACTTTCTTAGATGGCCAATATCTATCACTGGTGAAGATTTTAAGTC TAAAGCCCCATAAGTTCCTGACTTCTGGCAGGTGATCAACatctatttta cagaccggtctgcaaAGTACCAAGTACTCACAGGAACGGTTTTTTCTGTG ACTAGGCTCTTTTATTCTACAAATCAGCCTTCAGGAACTAATTGCAGGCA AATTGAACGAGTAAATCAGTTATAATACATGATTTTGGTCAAGTTTACAT TCTAGTCTGTAAAATATTAAACTATACCTACTCtctggtacctaatagcc gggggatttggaataagcggggattttggaaaaaatctcaaaactcaATA AGcgaggggggttggaataaaaatgtcctgggtggaaaattttggtaaag aaggagcagaattagggcaaaagagggaactttcaaaaaaaatttcccaa aaatcaataagcagggtggggggttggaataagaatgtcctgggtgaaaa ttttcaaaaaattaattagtgcccccccccccggctattaggtacccgag agtagttggccaaaccaaaattttgtaaatcatcttcaattatccatatc taccactggtcaaaatttcaaggtcaaagcccttgtcaatcttgagattt taaaAGATGCTTCCcccagtaaaaaataggaagatgcttGCTTGAAGGGC TAAAATTCCTTGATATAcctctaatttcaaaattcgaactatctgttatt ttttttcagtttattCTGATGGACGTGTTTGTATATCTATTCTCCATGCT CCTGGTGACGACCCTATGGGGTATGAAACTAGTGCTGAGAGGTGGTCGCC TGTTCAATCTGTGGAGAAAATCCTACTTTCAGTTGTTAGTATGCTCGCAG GTATTAGATATTTAACTCTCATTACCTTTAGCTTTACTACCTTATCATGA ATGCTGCAAAACCCCGAATTCAACAACTAGAGTAGACCATGATCAGCTTT CAACCATCATCTTCTTCATCATTATTGTTCATTTCTAGAACCAAATGATG AAAGTCCTGCCAATGTTGATGCATCCGTAAGTTGTTCTTTGCTGTTGTTT TTTGTTCGAATAAATTGCCTTGGAAGGTTTGTATTTAGAAAGGCTTTAAA ACCTacttttaaggaaaatttgcACTTTACACTTCAATCTTTCTGATGTG AACCTCTAGATGCTGCCGGATGCAGATCAttctgtaattcaaactaaAAC GATTGTCCCCTCAGCTTTGAAGGCTTTGAGGCTTTTTGTTATAGTAAAGA AAGGTTCTTTGTCCCTTGATTAAATGATTGTATAAGGAAGTTGGGTACAG TATtgtgtattcttgaaggaaaattaATTATGAAggatcaatagaccttt tcataaattacgtcactaacattacttgcctcgtattcaaacaattacca tggtgattatgtctcttgagacattaaatgatttttttaggaataggaag tagttttaataaaatccactggTAGTTAATctccatggcaataatttcaa aacgaggcaagtgatgttcgtaacgtaatttatgaaaaggtctatgtgCT CTGTCTTAGGAAAGTCGTTTCTGTGTGTTCTTGAAGGAAAATGTATTCTG TATTCCTGAAGGGAATGATATTTGTGTATTCTTGGAGGAAAATGATTTCT GTGTATACTTAAAGGAAaatggaaacttttttttcattgaagGATGAATG TGCTCTCTCTTGGGAAAATCTTTTCTGTGTGTTCTTAAAAGGAAAATGAT TTCTGTATTTCTGAAGGAAAATTGATTCTTTGTTTCAATGAAGGAATGAA TAGATTATTTCGTTGttctcttgaaaaaaaatgtttcctgGCTTAAGATA TTGAGAGTGCAGGATGGGTCACTTTCGTATAACAGATTATGCCTTTGTAA ACTGTCCTCGATTGAAAActtacttttgtttttcttttcagaaaatatGG CGTGAAAGCCGTGACCAATTTAACCGAATGGCTGATGAATGTGTCCGAAA ATCACTTGGTATCACCAAAAAACTTCAATAAATCCAAAGAATGGGAAAAG CAGTGCCGATACTGTAAGAGTTATATAATTTCATactatttattttgatt ttcgtttgtttttaaaacgaGATCTACCAAAATTGCCATAGGTTGATTTA AAAATATACTATTAGTTTATATCAAACTTGTAATAGTATTTATCACTTTA ATGGCATATATAAATAACaaactttgtttttgaaaaaatcaaatctaAAT ATAACGGTATCTTGCTTAAGACACATATTTATCATTCGTATTATCACTGT GCTGACCTTAACCTATAGTAAGTTTCCCAAAACGTATAGCGTTCAAGAAT AATCAGTTATGATTTGATTAAGATAAGGTAAGGTTAAATTTTGGATATTA TAGCATTTTGTTTAGGTTCTGAGTTTCTTCTTGATGGGCATTTTAATACC TTTCAATACTTGGGAAGGCTTGTCTCTTAATTGTCATTATCGTCGGATTA TTTAAAGTTGAATTGATTTCCTAGTTGATTTTatgaggcccccagcggtt ttcgtgatggcatGATTGGCGTTTTTTTGAAGTTCGTGATTACGTGATTG AAGATTTTGAAGTACATGATTGCGTgatcaacgtgatcgtgatagaaagg aaatttaacttgtaataacgtgatttggaattttttttgtgtgaTAGCGT GACTTGAAAGGTGACTGGGGGCCTCTATTATTGCTTGATTTCCAAACAAT AATGGCAAACTGTAGACTCATTTTAAGGATGAACTCTCACGAGGCACACT GTATTTACAAAGCTTTTCAATTGCGCTAAGCCTAATACTTCTTTTGGGTC AGTAACTTTTATCGTGTATAATTTCAGACACTTTTTGGATTATCTCGAag taaaaatagtttttaatcGTGGGATTTTAGCCTCTTGCTACATCTCGGAT TACATAACGTTTTGGCAGTACTCATTTCCTTTTCATAAAAGGGATCAATT TGTATTGTACTATGTCGAcatatttgatttgttttgttcttttggCTGTA TAAGGTGTTGTCGTTTTTGAATGTCAATATTTGCTTTGGAATATGGTATA CTTTTTTCATGACATcttgaattattttttgatgTTCTAATCAAAGttat aaatttcaaactcatttatACTCTTATTTTGTTGTTACCTTCGattcttt tcaaaaagattattaGATCCTCCTATTGTTTATTTTGCCAAAGGTGGTCA ATACATTTAGGAACAAACTGACGCATAATTGGACTTAAAATAATATAAGT G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044523XLOC_044523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071661-exon-scaffold_63-1491911889:623098..623208TCONS_00071661-exon-scaffold_63-1491911889:623098..623208Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:623098..623208TCONS_00071661-exon-scaffold_63-1510915933:623098..623208Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:623098..623208TCONS_00071661-exon-scaffold_63-1575043694:623098..623208Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:623426..623461TCONS_00071661-exon-scaffold_63-1491911889:623426..623461Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:623426..623461TCONS_00071661-exon-scaffold_63-1510915933:623426..623461Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:623426..623461TCONS_00071661-exon-scaffold_63-1575043694:623426..623461Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:624646..624691TCONS_00071661-exon-scaffold_63-1491911889:624646..624691Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:624646..624691TCONS_00071661-exon-scaffold_63-1510915933:624646..624691Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:624646..624691TCONS_00071661-exon-scaffold_63-1575043694:624646..624691Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:625252..625370TCONS_00071661-exon-scaffold_63-1491911889:625252..625370Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:625252..625370TCONS_00071661-exon-scaffold_63-1510915933:625252..625370Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:625252..625370TCONS_00071661-exon-scaffold_63-1575043694:625252..625370Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:626457..626597TCONS_00071661-exon-scaffold_63-1491911889:626457..626597Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:626457..626597TCONS_00071661-exon-scaffold_63-1510915933:626457..626597Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:626457..626597TCONS_00071661-exon-scaffold_63-1575043694:626457..626597Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:626736..626773TCONS_00071661-exon-scaffold_63-1491911889:626736..626773Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:626736..626773TCONS_00071661-exon-scaffold_63-1510915933:626736..626773Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:626736..626773TCONS_00071661-exon-scaffold_63-1575043694:626736..626773Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:627689..627810TCONS_00071661-exon-scaffold_63-1491911889:627689..627810Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:627689..627810TCONS_00071661-exon-scaffold_63-1510915933:627689..627810Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:627689..627810TCONS_00071661-exon-scaffold_63-1575043694:627689..627810Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1491911889:628330..629048TCONS_00071661-exon-scaffold_63-1491911889:628330..629048Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1510915933:628330..629048TCONS_00071661-exon-scaffold_63-1510915933:628330..629048Clytia hemisphaericaexon
TCONS_00071661-exon-scaffold_63-1575043694:628330..629048TCONS_00071661-exon-scaffold_63-1575043694:628330..629048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:623098..629048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156537 0.33114 0 0.75746 0 0 0 0 0 0 0.14778 0 0 0.125514 0 0 0 0 0 0 0 0 0.171454 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00071661 vs. Swiss-Prot (Human)
Match: UB2G2 (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 8.126e-92
Identity = 133/165 (80.61%), Postives = 149/165 (90.30%), Query Frame = 3
Query:   69 MAGSALKRLMAEYRQLLSNPPEGILAGPSNEENFFEWEALIAGPEDTPFDGGVFQAKLSFPHDYPLSPPKMKFTSDVFHPNIYSDGRVCISILHAPGDDPMGYETSAERWSPVQSVEKILLSVVSMLAEPNDESPANVDASKIWRESRDQFNRMADECVRKSLGI 563
            MAG+ALKRLMAEY+QL  NPPEGI+AGP NEENFFEWEALI GPEDT F+ GVF A LSFP DYPLSPPKM+FT ++FHPNIY DGRVCISILHAPGDDPMGYE+SAERWSPVQSVEKILLSVVSMLAEPNDES ANVDASK+WR+ R+QF ++A + V+KSLG+
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 165          
The following BLAST results are available for this feature:
BLAST of TCONS_00071661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2G28.126e-9280.61Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
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