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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071659 ID=TCONS_00071659|Name=TCONS_00071659|organism=Clytia hemisphaerica|type=transcript|length=2021bp
aaaaactaaaataaattcAAGATGTCGTCTTTAAAAAGTGCAATGAAGAG
TGGGCAGAGAACACACAGAGAACGTGGTCAAGTATCTGGTAGGAAGCATC
TTGGTAATTTGGAGAAACATAAAGATTATGTGCTGAGAGCTAAAGATTTT
CAtcggaagaagaaaataatcaaagggctgaaaaagaaagcatttgaAAA
GAATCCTGATGAATTCTACTTCCAAATGGtttcaagtaaaacaaaaaagg
gTGTTCACATTCAAGACAGACCTGACTCAAAACAGTTGACCAAAGAACAG
ATTAAGCTAATGAAGACACAAGATGTCAACTATCTAAATGTAAAACATAA
TGCGGAagctaaaaaaattgagaagttGAAATCTAATCTGCATTTTACAA
GCTTAGCTGATGCCCAACCAAGGACACATATTTTCTTTgtagattctaaa
aaagaagcAAAGAACTTTGATGCTGCAGAAAGGATGAATACTCATCCTGA
GTTCTTATCTCGTACACACAACATACCAACTTTGGAAACACTCAAAAAAA
TGGAGTTTGAGCAACCTGCTCCAAATAGCAAGGCTGGAGAAAAAGGTTAC
AAAGAATTACAGCGAAGGATAGAGAGGAAATCCAAACTGAACGAATCGAG
AAATCATTTGGTACTTCAGCGCAAATTGATGGGAAAAGGTTCCGTTAGGA
AACAAAAgactgaaaatgaagatgatgaGCCGCCTGTGTTTAAGTGGAAA
AGTATTAGAAAACGCTAATGAAaatgaagatgaaaagtaATGAGTAGTGA
TGTTTACTCCTATTGTAAGCTATGCCAAATAAACCATACCCAGCAACGAA
AACACATCTACACTAAGAAACAtcagaaaaagttgaaatgggTTTTACAG
AAATATGGACAGAAGATCAAGGAATGTCGGCCTTATCTCAGCAACCCTGT
AATACAGGAAGGTGATTTTGAAACTGATAAGAACTTTTGGTGTCATTGCT
GTGGCAATTCATTCaagaaacatgtgtctgattaTGTAAAAACTATTTTG
TATGGTGGAGTGATAGAACATCTTGCCACTGAAGAACATTGGGCTAATAC
TGAAACGTTCTTTAAAGAGAATGGTGCAGacgagaaattcaaaatttctt
tcataGTTTCAGAGAAAGATATCAATTTATTCAAAAGTAAACTTGAACCG
TTGGTTGATGTCTATAATCATAGagctgaaaagaaaacaaaagcttTGGC
AAAGGAAATTGAAACGCAAGAACATGCCAGGAAACTTGTTCTGGATTCAG
CAAATGTTGGATCTTTTGCATCAAATAACACTGAATCTCAATATAAGACA
GTGAAAAACAAACACAGTGTTGTACAGAACCCTACTGGATATCATGATGG
TATCAGAGTGTGGAGAGCCGGCATTGTCAAATACAAGCAAGGTTCAAATC
AACTGAAACCATTGAAATATCCATGTCGTAAAATTGAGAGGTTACATAAA
TGTACTGAATCCTCAATCTACACAGTCTCTGCTGATGGTGTAGGTCTCAC
ATCAATAACTGCAAAATTTGATTCCAGAAAAGGAAATATCTATACCGGAG
CAACACCTCCTTGGCTACGAGACGATCATGTAGAGGATAAAGACCAAAGG
GAAGCACCCTCATCTTCTAGAATTTATGGGCCTTCAATGGAAGATCTGAT
TAAGAATAAAGAAGTAAAGAGGAAAGCCAAGCTTAATCCCAATAGAGTTG
GTGCCAATTTTGATCATACTGTTAGCCAGAAGGATAGTGAATGGTTACCT
TCATTTGGAAGAGTCTGGAATAACGGTGCTCGTTGGAAGTCAAGACATGA
ATATCACAATGAACAGAAAGGTGCTAAGAAACCAAAAAAAGATTAACTTT
TAACTGACAAGCTGAATCTCATTGCCTTGGGATATTGGGGTATTGTAAAT
AATGTATTTATATGGAAATGTTGTCATCACATCTgtttaataaaaacaat
aacattataaAATCTTTTGAT Run BLAST on NCBI protein sequence of TCONS_00071659-protein >TCONS_00071659-protein ID=TCONS_00071659-protein|Name=TCONS_00071659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MSSDVYSYCKLCQINHTQQRKHIYTKKHQKKLKWVLQKYGQKIKECRPYL
SNPVIQEGDFETDKNFWCHCCGNSFKKHVSDYVKTILYGGVIEHLATEEH
WANTETFFKENGADEKFKISFIVSEKDINLFKSKLEPLVDVYNHRAEKKT
KALAKEIETQEHARKLVLDSANVGSFASNNTESQYKTVKNKHSVVQNPTG
YHDGIRVWRAGIVKYKQGSNQLKPLKYPCRKIERLHKCTESSIYTVSADG
VGLTSITAKFDSRKGNIYTGATPPWLRDDHVEDKDQREAPSSSRIYGPSM
EDLIKNKEVKRKAKLNPNRVGANFDHTVSQKDSEWLPSFGRVWNNGARWK
SRHEYHNEQKGAKKPKKD Run BLAST on NCBI transcript from alignment at scaffold_63:620534..622948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071659 ID=TCONS_00071659|Name=TCONS_00071659|organism=Clytia hemisphaerica|type=transcript|length=2415bp|location=Sequence derived from alignment at scaffold_63:620534..622948+ (Clytia hemisphaerica)
aaaaactaaaataaattcAAGATGTCGTCTTTAAAAAGTGCAATGAAGAG
TGGGCAGAGAACACACAGAGAACGTGGTCAAGTATCTGGTAGGAAGCATC
TTGGTAATTTGGAGAAACATAAAGATTATGTGCTGAGAGCTAAAGATTTT
CAtcggaagaagaaaataatcaaagggctgaaaaagaaagcatttgaAAA
GAATCCTGATGAATTCTACTTCCAAATGGtttcaagtaaaacaaaaaagg
gTGTTCACATTCAAGACAGACCTGACTCAAAACAGTTGACCAAAGAACAG
ATTAAGCTAATGAAGACACAAGATGTCAACTATCTAAATGTAAAACATAA
TGCGGAagctaaaaaaattgagaagttGAAATCTAATCTGCATTTTACAA
GCTTAGCTGATGCCCAACCAAGGACACATATTTTCTTTgtagattctaaa
aaagaagcAAAGAACTTTGATGCTGCAGAAAGGATGAATACTCATCCTGA
GTTCTTATCTCGTACACACAACATACCAACTTTGGAAACACTCAAAAAAA
TGGAGTTTGAGCAACCTGCTCCAAATAGCAAGGCTGGAGAAAAAGGTTAC
AAAGAATTACAGCGAAGGATAGAGAGGAAATCCAAACTGAACGAATCGAG
AAATCATTTGGTACTTCAGCGCAAATTGATGGGAAAAGGTTCCGTTAGGA
AACAAAAgactgaaaatgaagatgatgaGCCGCCTGTGTTTAAGTGGAAA
AGTATTAGAAAACGCTAATGAAGTATATGAATTAGATTTTATCTCACAAT
AAtcttgcttcatttcaaagctagaccaaaatttatttcctgaaaatttt
tgtaacatttttatAGAAGAAGAAAGGATATCTTTAGTAATTCGATGTAC
AggattattttgttttaaaaactacaggacattttttttaatttccttgC
GGGCTAAAAAGTAACTAAACACAGAAACTAAAGTAGAACTTtataattga
tttgaaattaagGCCTTATTTATCCTTAGCAACtttaagatttaaatttt
tcaaccGAGTGCATATCTTGCATGTCAATTTTTCCTTATTAAAAATcttg
ttgaaatattttgtctTTTCGATTACCTTGCTTTCATGTGTTTATGTTTT
CTTTCTATCTTTTtagaatgaagatgaaaagtaATGAGTAGTGATGTTTA
CTCCTATTGTAAGCTATGCCAAATAAACCATACCCAGCAACGAAAACACA
TCTACACTAAGAAACAtcagaaaaagttgaaatgggTTTTACAGAAATAT
GGACAGAAGATCAAGGAATGTCGGCCTTATCTCAGCAACCCTGTAATACA
GGAAGGTGATTTTGAAACTGATAAGAACTTTTGGTGTCATTGCTGTGGCA
ATTCATTCaagaaacatgtgtctgattaTGTAAAAACTATTTTGTATGGT
GGAGTGATAGAACATCTTGCCACTGAAGAACATTGGGCTAATACTGAAAC
GTTCTTTAAAGAGAATGGTGCAGacgagaaattcaaaatttctttcataG
TTTCAGAGAAAGATATCAATTTATTCAAAAGTAAACTTGAACCGTTGGTT
GATGTCTATAATCATAGagctgaaaagaaaacaaaagcttTGGCAAAGGA
AATTGAAACGCAAGAACATGCCAGGAAACTTGTTCTGGATTCAGCAAATG
TTGGATCTTTTGCATCAAATAACACTGAATCTCAATATAAGACAGTGAAA
AACAAACACAGTGTTGTACAGAACCCTACTGGATATCATGATGGTATCAG
AGTGTGGAGAGCCGGCATTGTCAAATACAAGCAAGGTTCAAATCAACTGA
AACCATTGAAATATCCATGTCGTAAAATTGAGAGGTTACATAAATGTACT
GAATCCTCAATCTACACAGTCTCTGCTGATGGTGTAGGTCTCACATCAAT
AACTGCAAAATTTGATTCCAGAAAAGGAAATATCTATACCGGAGCAACAC
CTCCTTGGCTACGAGACGATCATGTAGAGGATAAAGACCAAAGGGAAGCA
CCCTCATCTTCTAGAATTTATGGGCCTTCAATGGAAGATCTGATTAAGAA
TAAAGAAGTAAAGAGGAAAGCCAAGCTTAATCCCAATAGAGTTGGTGCCA
ATTTTGATCATACTGTTAGCCAGAAGGATAGTGAATGGTTACCTTCATTT
GGAAGAGTCTGGAATAACGGTGCTCGTTGGAAGTCAAGACATGAATATCA
CAATGAACAGAAAGGTGCTAAGAAACCAAAAAAAGATTAACTTTTAACTG
ACAAGCTGAATCTCATTGCCTTGGGATATTGGGGTATTGTAAATAATGTA
TTTATATGGAAATGTTGTCATCACATCTgtttaataaaaacaataacatt
ataaAATCTTTTGAT Coding sequence (CDS) from alignment at scaffold_63:620534..622948+ >TCONS_00071659 ID=TCONS_00071659|Name=TCONS_00071659|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_63:620534..622948+ (Clytia hemisphaerica)
ATGAGTAGTGATGTTTACTCCTATTGTAAGCTATGCCAAATAAACCATAC
CCAGCAACGAAAACACATCTACACTAAGAAACAtcagaaaaagttgaaat
gggTTTTACAGAAATATGGACAGAAGATCAAGGAATGTCGGCCTTATCTC
AGCAACCCTGTAATACAGGAAGGTGATTTTGAAACTGATAAGAACTTTTG
GTGTCATTGCTGTGGCAATTCATTCaagaaacatgtgtctgattaTGTAA
AAACTATTTTGTATGGTGGAGTGATAGAACATCTTGCCACTGAAGAACAT
TGGGCTAATACTGAAACGTTCTTTAAAGAGAATGGTGCAGacgagaaatt
caaaatttctttcataGTTTCAGAGAAAGATATCAATTTATTCAAAAGTA
AACTTGAACCGTTGGTTGATGTCTATAATCATAGagctgaaaagaaaaca
aaagcttTGGCAAAGGAAATTGAAACGCAAGAACATGCCAGGAAACTTGT
TCTGGATTCAGCAAATGTTGGATCTTTTGCATCAAATAACACTGAATCTC
AATATAAGACAGTGAAAAACAAACACAGTGTTGTACAGAACCCTACTGGA
TATCATGATGGTATCAGAGTGTGGAGAGCCGGCATTGTCAAATACAAGCA
AGGTTCAAATCAACTGAAACCATTGAAATATCCATGTCGTAAAATTGAGA
GGTTACATAAATGTACTGAATCCTCAATCTACACAGTCTCTGCTGATGGT
GTAGGTCTCACATCAATAACTGCAAAATTTGATTCCAGAAAAGGAAATAT
CTATACCGGAGCAACACCTCCTTGGCTACGAGACGATCATGTAGAGGATA
AAGACCAAAGGGAAGCACCCTCATCTTCTAGAATTTATGGGCCTTCAATG
GAAGATCTGATTAAGAATAAAGAAGTAAAGAGGAAAGCCAAGCTTAATCC
CAATAGAGTTGGTGCCAATTTTGATCATACTGTTAGCCAGAAGGATAGTG
AATGGTTACCTTCATTTGGAAGAGTCTGGAATAACGGTGCTCGTTGGAAG
TCAAGACATGAATATCACAATGAACAGAAAGGTGCTAAGAAACCAAAAAA
AGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071659-exon-scaffold_63-1491911889:620534..621305 | TCONS_00071659-exon-scaffold_63-1491911889:620534..621305 | Clytia hemisphaerica | exon |
| TCONS_00071659-exon-scaffold_63-1510915933:620534..621305 | TCONS_00071659-exon-scaffold_63-1510915933:620534..621305 | Clytia hemisphaerica | exon |
| TCONS_00071659-exon-scaffold_63-1575043694:620534..621305 | TCONS_00071659-exon-scaffold_63-1575043694:620534..621305 | Clytia hemisphaerica | exon |
| TCONS_00071659-exon-scaffold_63-1491911889:621700..622948 | TCONS_00071659-exon-scaffold_63-1491911889:621700..622948 | Clytia hemisphaerica | exon |
| TCONS_00071659-exon-scaffold_63-1510915933:621700..622948 | TCONS_00071659-exon-scaffold_63-1510915933:621700..622948 | Clytia hemisphaerica | exon |
| TCONS_00071659-exon-scaffold_63-1575043694:621700..622948 | TCONS_00071659-exon-scaffold_63-1575043694:621700..622948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:620534..622948 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR028015 | CCDC84 |
Blast
BLAST of TCONS_00071659 vs. Swiss-Prot (Human)
Match: UTP11 (Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 7.830e-51 Identity = 112/253 (44.27%), Postives = 154/253 (60.87%), Query Frame = 1
Query: 25 SSLKSAMKSGQRTHRERGQVSGRKHLGNLEKHKDYVLRAKDFHRXXXXXXXXXXXAFEKNPDEFYFQMVSSKTKKGVHIQDRPDSKQLTKEQIKLMKTQDVNYLNVKHNAEAKKIEKLKSNLHFTSLADAQPRTHIFFVDSKKEAKNFDAAERMNTHPEFLSRTHNIPTLETLKKMEFEQPAPNS------KAGEKGYKELQRRIERKSKLNESRNHLVLQRKLMGKGSVRKQKTENEDDEPPVFKWKSIRKR 765
++ + A KS QR HRER Q RKHLG LEK KDY LRA D+ +K++ +K L+KKA EKNPDEFY++M K + GVHI + +++T EQ+KLM+TQDV Y+ +K AEAKKIE+LKS LH Q H+FF D+KKE + FD A + T PE + R N P +ETL+K + + + K +K Y L +RIER+ KL + ++ LM K K K E + P ++K++S RKR
Sbjct: 3 AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHI-IKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS-PAIYKFQSRRKR 253
The following BLAST results are available for this feature:
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