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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071658 ID=TCONS_00071658|Name=TCONS_00071658|organism=Clytia hemisphaerica|type=transcript|length=2727bp
CTTAGAACTAGCCCTAACAACCATTACTTTAGACACAAAGGCTATCATAA
GCATTTTTATTTCCTCCCTGTTTTATTTTGTATATGTTTTGTTATTTACT
GGCTAACATTGGGGTGTTTGATCTGAAGGTTTTACCTAGCATAATATTCG
ATCACTCATTCATTGACAGGTAGATCCATAAATgtgtttgataaaaataa
tttatttaatatagcaaaaactaaaataaattcAAGATGTCGTCTTTAAA
AAGTGCAATGAAGAGTGGGCAGAGAACACACAGAGAACGTGGTCAAGTAT
CTGGTAGGAAGCATCTTGGTAATTTGGAGAAACATAAAGATTATGTGCTG
AGAGCTAAAGATTTTCAtcggaagaagaaaataatcaaagggctgaaaaa
gaaagcatttgaAAAGAATCCTGATGAATTCTACTTCCAAATGGtttcaa
gtaaaacaaaaaagggTGTTCACATTCAAGACAGACCTGACTCAAAACAG
TTGACCAAAGAACAGATTAAGCTAATGAAGACACAAGATGTCAACTATCT
AAATGTAAAACATAATGCGGAagctaaaaaaattgagaagttGAAATCTA
ATCTGCATTTTACAAGCTTAGCTGATGCCCAACCAAGGACACATATTTTC
TTTgtagattctaaaaaagaagcAAAGAACTTTGATGCTGCAGAAAGGAT
GAATACTCATCCTGAGTTCTTATCTCGTACACACAACATACCAACTTTGG
AAACACTCAAAAAAATGGAGTTTGAGCAACCTGCTCCAAATAGCAAGGCT
GGAGAAAAAGGTTACAAAGAATTACAGCGAAGGATAGAGAGGAAATCCAA
ACTGAACGAATCGAGAAATCATTTGGTACTTCAGCGCAAATTGATGGGAA
AAGGTTCCGTTAGGAAACAAAAgactgaaaatgaagatgatgaGCCGCCT
GTGTTTAAGTGGAAAAGTATTAGAAAACGCTAATGAAGTATATGAATTAG
ATTTTATCTCACAATAAtcttgcttcatttcaaagctagaccaaaattta
tttcctgaaaatttttgtaacatttttatAGAAGAAGAAAGGATATCTTT
AGTAATTCGATGTACAggattattttgttttaaaaactacaggacatttt
ttttaatttccttgCGGGCTAAAAAGTAACTAAACACAGAAACTAAAGTA
GAACTTtataattgatttgaaattaagGCCTTATTTATCCTTAGCAACtt
taagatttaaatttttcaaccGAGTGCATATCTTGCATGTCAATTTTTCC
TTATTAAAAATcttgttgaaatattttgtctTTTCGATTACCTTGCTTTC
ATGTGTTTATGTTTTCTTTCTATCTTTTtagaatgaagatgaaaagtaAT
GAGTAGTGATGTTTACTCCTATTGTAAGCTATGCCAAATAAACCATACCC
AGCAACGAAAACACATCTACACTAAGAAACAtcagaaaaagttgaaatgg
gTTTTACAGAAATATGGACAGAAGATCAAGGAATGTCGGCCTTATCTCAG
CAACCCTGTAATACAGGAAGGTGATTTTGAAACTGATAAGAACTTTTGGT
GTCATTGCTGTGGCAATTCATTCaagaaacatgtgtctgattaTGTAAAA
ACTATTTTGTATGGTGGAGTGATAGAACATCTTGCCACTGAAGAACATTG
GGCTAATACTGAAACGTTCTTTAAAGAGAATGGTGCAGacgagaaattca
aaatttctttcataGTTTCAGAGAAAGATATCAATTTATTCAAAAGTAAA
CTTGAACCGTTGGTTGATGTCTATAATCATAGagctgaaaagaaaacaaa
agcttTGGCAAAGGAAATTGAAACGCAAGAACATGCCAGGAAACTTGTTC
TGGATTCAGCAAATGTTGGATCTTTTGCATCAAATAACACTGAATCTCAA
TATAAGACAGTGAAAAACAAACACAGTGTTGTACAGAACCCTACTGGATA
TCATGATGGTATCAGAGTGTGGAGAGCCGGCATTGTCAAATACAAGCAAG
GTTCAAATCAACTGAAACCATTGAAATATCCATGTCGTAAAATTGAGAGG
TTACATAAATGTACTGAATCCTCAATCTACACAGTCTCTGCTGATGGTGT
AGGTCTCACATCAATAACTGCAAAATTTGATTCCAGAAAAGGAAATATCT
ATACCGGAGCAACACCTCCTTGGCTACGAGACGATCATGTAGAGGATAAA
GACCAAAGGGAAGCACCCTCATCTTCTAGAATTTATGGGCCTTCAATGGA
AGATCTGATTAAGAATAAAGAAGTAAAGAGGAAAGCCAAGCTTAATCCCA
ATAGAGTTGGTGCCAATTTTGATCATACTGTTAGCCAGAAGGATAGTGAA
TGGTTACCTTCATTTGGAAGAGTCTGGAATAACGGTGCTCGTTGGAAGTC
AAGACATGAATATCACAATGAACAGAAAGGTGCTAAGAAACCAAAAAAAG
ATTAACTTTTAACTGACAAGCTGAATCTCATTGCCTTGGGATATTGGGGT
ATTGTAAATAATGTATTTATATGGAAATGTTGTCATCACATCTgtttaat
aaaaacaataacattataaAATCTTTTGATGGTCCTAATTTCAAAACCTA
ttctatcaaaatatttttacaccTTTAAAAATATTGTCCTCAAAAATTAT
GATTGAAACTTGAATTATGATTGAAAG Run BLAST on NCBI transcript from alignment at scaffold_63:620319..623045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071658 ID=TCONS_00071658|Name=TCONS_00071658|organism=Clytia hemisphaerica|type=transcript|length=2727bp|location=Sequence derived from alignment at scaffold_63:620319..623045+ (Clytia hemisphaerica)
CTTAGAACTAGCCCTAACAACCATTACTTTAGACACAAAGGCTATCATAA
GCATTTTTATTTCCTCCCTGTTTTATTTTGTATATGTTTTGTTATTTACT
GGCTAACATTGGGGTGTTTGATCTGAAGGTTTTACCTAGCATAATATTCG
ATCACTCATTCATTGACAGGTAGATCCATAAATgtgtttgataaaaataa
tttatttaatatagcaaaaactaaaataaattcAAGATGTCGTCTTTAAA
AAGTGCAATGAAGAGTGGGCAGAGAACACACAGAGAACGTGGTCAAGTAT
CTGGTAGGAAGCATCTTGGTAATTTGGAGAAACATAAAGATTATGTGCTG
AGAGCTAAAGATTTTCAtcggaagaagaaaataatcaaagggctgaaaaa
gaaagcatttgaAAAGAATCCTGATGAATTCTACTTCCAAATGGtttcaa
gtaaaacaaaaaagggTGTTCACATTCAAGACAGACCTGACTCAAAACAG
TTGACCAAAGAACAGATTAAGCTAATGAAGACACAAGATGTCAACTATCT
AAATGTAAAACATAATGCGGAagctaaaaaaattgagaagttGAAATCTA
ATCTGCATTTTACAAGCTTAGCTGATGCCCAACCAAGGACACATATTTTC
TTTgtagattctaaaaaagaagcAAAGAACTTTGATGCTGCAGAAAGGAT
GAATACTCATCCTGAGTTCTTATCTCGTACACACAACATACCAACTTTGG
AAACACTCAAAAAAATGGAGTTTGAGCAACCTGCTCCAAATAGCAAGGCT
GGAGAAAAAGGTTACAAAGAATTACAGCGAAGGATAGAGAGGAAATCCAA
ACTGAACGAATCGAGAAATCATTTGGTACTTCAGCGCAAATTGATGGGAA
AAGGTTCCGTTAGGAAACAAAAgactgaaaatgaagatgatgaGCCGCCT
GTGTTTAAGTGGAAAAGTATTAGAAAACGCTAATGAAGTATATGAATTAG
ATTTTATCTCACAATAAtcttgcttcatttcaaagctagaccaaaattta
tttcctgaaaatttttgtaacatttttatAGAAGAAGAAAGGATATCTTT
AGTAATTCGATGTACAggattattttgttttaaaaactacaggacatttt
ttttaatttccttgCGGGCTAAAAAGTAACTAAACACAGAAACTAAAGTA
GAACTTtataattgatttgaaattaagGCCTTATTTATCCTTAGCAACtt
taagatttaaatttttcaaccGAGTGCATATCTTGCATGTCAATTTTTCC
TTATTAAAAATcttgttgaaatattttgtctTTTCGATTACCTTGCTTTC
ATGTGTTTATGTTTTCTTTCTATCTTTTtagaatgaagatgaaaagtaAT
GAGTAGTGATGTTTACTCCTATTGTAAGCTATGCCAAATAAACCATACCC
AGCAACGAAAACACATCTACACTAAGAAACAtcagaaaaagttgaaatgg
gTTTTACAGAAATATGGACAGAAGATCAAGGAATGTCGGCCTTATCTCAG
CAACCCTGTAATACAGGAAGGTGATTTTGAAACTGATAAGAACTTTTGGT
GTCATTGCTGTGGCAATTCATTCaagaaacatgtgtctgattaTGTAAAA
ACTATTTTGTATGGTGGAGTGATAGAACATCTTGCCACTGAAGAACATTG
GGCTAATACTGAAACGTTCTTTAAAGAGAATGGTGCAGacgagaaattca
aaatttctttcataGTTTCAGAGAAAGATATCAATTTATTCAAAAGTAAA
CTTGAACCGTTGGTTGATGTCTATAATCATAGagctgaaaagaaaacaaa
agcttTGGCAAAGGAAATTGAAACGCAAGAACATGCCAGGAAACTTGTTC
TGGATTCAGCAAATGTTGGATCTTTTGCATCAAATAACACTGAATCTCAA
TATAAGACAGTGAAAAACAAACACAGTGTTGTACAGAACCCTACTGGATA
TCATGATGGTATCAGAGTGTGGAGAGCCGGCATTGTCAAATACAAGCAAG
GTTCAAATCAACTGAAACCATTGAAATATCCATGTCGTAAAATTGAGAGG
TTACATAAATGTACTGAATCCTCAATCTACACAGTCTCTGCTGATGGTGT
AGGTCTCACATCAATAACTGCAAAATTTGATTCCAGAAAAGGAAATATCT
ATACCGGAGCAACACCTCCTTGGCTACGAGACGATCATGTAGAGGATAAA
GACCAAAGGGAAGCACCCTCATCTTCTAGAATTTATGGGCCTTCAATGGA
AGATCTGATTAAGAATAAAGAAGTAAAGAGGAAAGCCAAGCTTAATCCCA
ATAGAGTTGGTGCCAATTTTGATCATACTGTTAGCCAGAAGGATAGTGAA
TGGTTACCTTCATTTGGAAGAGTCTGGAATAACGGTGCTCGTTGGAAGTC
AAGACATGAATATCACAATGAACAGAAAGGTGCTAAGAAACCAAAAAAAG
ATTAACTTTTAACTGACAAGCTGAATCTCATTGCCTTGGGATATTGGGGT
ATTGTAAATAATGTATTTATATGGAAATGTTGTCATCACATCTgtttaat
aaaaacaataacattataaAATCTTTTGATGGTCCTAATTTCAAAACCTA
ttctatcaaaatatttttacaccTTTAAAAATATTGTCCTCAAAAATTAT
GATTGAAACTTGAATTATGATTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071658-exon-scaffold_63-1491911889:620319..623045 | TCONS_00071658-exon-scaffold_63-1491911889:620319..623045 | Clytia hemisphaerica | exon |
| TCONS_00071658-exon-scaffold_63-1510915933:620319..623045 | TCONS_00071658-exon-scaffold_63-1510915933:620319..623045 | Clytia hemisphaerica | exon |
| TCONS_00071658-exon-scaffold_63-1575043694:620319..623045 | TCONS_00071658-exon-scaffold_63-1575043694:620319..623045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:620319..623045 + |
Blast
BLAST of TCONS_00071658 vs. Swiss-Prot (Human)
Match: UTP11 (Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 4.257e-50 Identity = 112/253 (44.27%), Postives = 154/253 (60.87%), Query Frame = 3
Query: 240 SSLKSAMKSGQRTHRERGQVSGRKHLGNLEKHKDYVLRAKDFHRXXXXXXXXXXXAFEKNPDEFYFQMVSSKTKKGVHIQDRPDSKQLTKEQIKLMKTQDVNYLNVKHNAEAKKIEKLKSNLHFTSLADAQPRTHIFFVDSKKEAKNFDAAERMNTHPEFLSRTHNIPTLETLKKMEFEQPAPNS------KAGEKGYKELQRRIERKSKLNESRNHLVLQRKLMGKGSVRKQKTENEDDEPPVFKWKSIRKR 980
++ + A KS QR HRER Q RKHLG LEK KDY LRA D+ +K++ +K L+KKA EKNPDEFY++M K + GVHI + +++T EQ+KLM+TQDV Y+ +K AEAKKIE+LKS LH Q H+FF D+KKE + FD A + T PE + R N P +ETL+K + + + K +K Y L +RIER+ KL + ++ LM K K K E + P ++K++S RKR
Sbjct: 3 AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRVKLQDGVHI-IKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS-PAIYKFQSRRKR 253
The following BLAST results are available for this feature:
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