|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071650 ID=TCONS_00071650|Name=TCONS_00071650|organism=Clytia hemisphaerica|type=transcript|length=2378bp
aaaaaatataacAGATTGGCGTTATTAGTCTACAACCATAGACATAACGA
ATAAATTTGCATAGTTTTGTTGGTGGTTACGTTCAAAGTCCAGTTGATAT
CTTGTGGCCAAACAAAGCGTGTTCTTGAAATCGGGATTTATTGCCAGTcg
ttcatttattttcaaacatttgaagaactttgaaaaaaaatgggTGCAGG
AGCTGGCAAGGAACAAGATggcaacaaaaaacaaaaaatcactaaaaaag
acttaaagtttttcttaaaagaaattaaagaacATACTGCTGGCATTAAC
AGTATGACATTAACACCCGATGGCTCCATGCTGGTGTCCGCCAGTGAAGA
CGCCAACGCCCATATCCTAGACACAACCAGTGAACAAACAGTATCCGTGT
TAAAAGGAcacgaaaaatatataaacTCTGTGGTGTGCAATAACGATTTC
GTGTTCACCGCCTCAGCCGATAAAATGATCCGGAAATGGCGTATAGATAC
AGGCATGTGCTCCAAAACAATGCGTGGCCACACATGCGCCGTAAATCGTC
TCATGCTTGTAGACAGCTTACTTTTTTCATCATCATACGATCGAAGTGCA
AGATGTTGGCATATCGATACTGGTGAATGCCTTGCAGTTTTTAACGGTCA
CAAACTCGGTGTCTACCCATTGTTATACATTCCACAATCAGATGATTCCT
TCGAAAGAGATATCACAGACCTCAATAATAACCACGATATATTAATCACT
GGGTCAGCAGATACTACCGCTAAATCCTGGGCACTTAACACGAATGAGGT
CTTATTGACGTATAAAGGCCATAATGGAGCAGTTTTATCTATGGCATGTG
ACAACAGTGGGAAATATTTGTTCACTGGAAGTCAAGATTCAACTATCCGA
TCATATGTCTTGTCTACAGGAAAGCCTGTCAATGTATTCAGTGGACATGC
CGCTTCAGTGCTACAGTTACAGGTTGTTAACCGATTGCTATTTTCATCAA
GTGCTGACCATACCGTTCGATGTTGGGTATACGAGTTTGGGGAATGCACG
CGTGTCTACCGTGGACACACGCACACTGTTGGTTGCATGAAAGTTGCCAA
AGGATTATTGTTAACTGGGTCTGGGGATGATACAGCCAAAATCTTTGACG
CGAAATCGGGAACAAACAAACGAACATTCCGTGGACATATTGGCTCAGTT
AATGCACTCGTGCTACACAAACATAAACTATACACTGGATCAAATGATGG
TGCGATTAGGATTTGGGATGCATCCGGTATCGGTGAAGATGATGACGACG
ACGATGAGGAGGAAGATAGTGGCGTCGTCCCGATGCAGCAAGAACAACAA
ACACCACAATCTCAATCTCCAGCACCTAGCAACGACGATGCAGCACCGAT
TAATGATGAAAATGCACAACCAGTTAACGAATAATGTATTGTATAAACAA
TTTGTAAAACATAAACATTAACATCTTCTTGTGTTGATGATGATGAGGTT
GTTGTTGCCGATGATTTCAAGTCCAACTAATGTCCATCTAACATTCATAA
AACGTTCGATCGATGATCAAATAACAATGCGTGTAAACCCGGGGACGGAA
GAGGAATAAACTTGGTAAGAAAATGAGACTGATTGAAACAACGCAGAAGA
AACTATCAACGAcgacaacgaggctcaaaaatgaaAACCTTCTTGAATTA
TGGACACGTGACTTCAAATTCTTTGCCACGTGTTTGGGGAAAAGTCCTGT
GTGAAATTGACAATTCCCGAACGGAATCAGAATTGTTTACAACCCTCCTG
gattttttaatgaatatttAATGATGTTCCTGGAATGATTTTCCTTGACT
ATGAAGACTTAATGAAAAGAGACGAGAAaaaacgaaattaaattcttttt
gtaaattttttaactCACTCAGCAAAGCTATACGATACCTGACACTGGTA
ATTCGAGgatcaaaatccaaaaaattacaTGAGTTTTTATAACTTTCAAG
TCACCCTTAGGGTGTAGAAAAAACTATAAAGTGTCGTCAGTGATTTGCTT
GGTGCGTCCCGCACAAAATATGCATTTCTATATCAGATTGTAttgtttat
aaaaaacgtgtttgGAAGTATTTCTGAGACAATTATTTCAAGGGTTTATC
GAATTTAATGTAATGAATCTGAAGGTGGCCTGTCGCAAAATTTTGCTGCT
ATGACGATAAACATGACGAAATGGAAAAGGATTTTAACGGCTTAATCTtc
tctttgaaaatttatttgtatttacctataaaaattgaaatgggGAAAAA
AGCTGAAACAATATTTCGCAATAATTGAAATAATTCGTGTTTAATTAGCA
TTTTAGTGCAAAGATTTTTATATGGTAT Run BLAST on NCBI transcript from alignment at scaffold_63:412084..417209+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071650 ID=TCONS_00071650|Name=TCONS_00071650|organism=Clytia hemisphaerica|type=transcript|length=5126bp|location=Sequence derived from alignment at scaffold_63:412084..417209+ (Clytia hemisphaerica)
aaaaaatataacAGATTGGCGTTATTAGTCTACAACCATAGACATAACGA
ATAAATTTGCATAGTTTTGTTGGTGGTTACGTTCAAAGTCCAGTTGATAT
CTTGTGGCCAAACAAAGCGTGTTCTTGAAATCGGGATTTATTGCCAGTcg
ttcatttattttcaaacatttgaagaactttgaaaaaaaatgggTGCAGG
AGCTGGCAAGGAACAAGATggcaacaaaaaacaaaaaatcactaaaaaag
acttaaagtttttcttaaaagaaattaaagaacATACTGCTGGCATTAAC
AGTATGACATTAACACCCGATGGCTCCATGCTGGTGTCCGCCAGTGAAGA
CGCCAACGCCCATATCCTAGACACAACCAGTGAACAAACAGTATCCGTGT
TAAAAGGAcacgaaaaatatataaacTCTGTGGTGTGCAATAACGATTTC
GTGTTCACCGCCTCAGCCGATAAAATGATCCGGAAATGGCGTATAGATAC
AGGCATGTGCTCCAAAACAATGCGTGGCCACACATGCGCCGTAAATCGTC
TCATGCTTGTAGACAGCTTACTTTTTTCATCATCATACGATCGAAGTGCA
AGATGTTGGCATATCGATACTGGTGAATGCCTTGCAGTTTTTAACGGTCA
CAAACTCGGTGTCTACCCATTGTTATACATTCCACAATCAGATGATTCCT
TCGAAAGAGATATCACAGACCTCAATAATAACCACGATATATTAATCACT
GGGTCAGCAGATACTACCGCTAAATCCTGGGCACTTAACACGAATGAGGT
CTTATTGACGTATAAAGGCCATAATGGAGCAGTTTTATCTATGGCATGTG
ACAACAGTGGGAAATATTTGTTCACTGGAAGTCAAGATTCAACTATCCGA
TCATATGTCTTGTCTACAGGAAAGCCTGTCAATGTATTCAGTGGACATGC
CGCTTCAGTGCTACAGTTACAGGTGAGATAATGATAAGTTTTTTTTCCAG
ACATACTGTATTTTGTGATGTTTGTGACATTCACACATGTAATATTTGTA
GCTTGGTTTAAattacaccccttctcacagacccggcaGGATTTATTCAG
CCATTgcggataaaaataacggacagAAACTCGATGGCATAGATATCTTT
TTtgactggggatttcaattctttcggtttcaagttagaaaattcagtgg
ggatgggaaaaataacataatattttccagtgaggattggtttatttgat
tattttcatcgGGGATAAAAATTGGCGGATAGTtctccaccggggacgat
atttcggccaagttttccagtgggaaggggtccgtAAGGGTCTGTAAGAA
AGGGGTATTAAATTACTCATTAAAGAGTCTCAGCATGATTTGAGGACGCA
GATCCGCAACCGCAAGTACCATCTACTTTCTTTGATCCATAATAAAAACA
TGGTTGGTATTCTGCCATAGGAATTTAAATAGCTTAATCATTCATAACTT
TTAAATATTCCAAGAATGAAAGGCACCTATGATTTTTCTTCCTAGAAATG
GTTTGTATTATACAttgtgtcccgaaaaaaagcggacaaatttctatata
aagtaaaatccacATTATTCACGCCAAATTGATAACTTGTATGCTTGACA
TTTCAATCTaaaaaacctattcaatcagCTTGGGAACGGAAAATTGTAAT
ATTATTTCAATTATTAGTCCAAGTTTTGATTATTAGTTTAGAGGATTTTA
CTCCATATAAAATGCCTCTTGTTTGGGACACGCTGTAAGAGGTTTATTCC
TAATTGCCTTATTCAATTGTAATACCTATAAAAGCAATTCTTTTAGGTTG
TTAACCGATTGCTATTTTCATCAAGTGCTGACCATACCGTTCGATGTTGG
GTATACGAGTTTGGGGAATGCACGCGTGTCTACCGTGGACACACGCACAC
TGTTGGTTGCATGAAAGTTGCCAAAGGATTATGTAAGTTCAGATATTGAT
TTTGTCCTTCCTTGTTCaggggttttgctttgtttttggtaggctggcga
ataaaaaaattaaccctggcgatttctagattctaggccgacgaattctt
agcaagcgtagtgtattgattagcgtaaatatgtacttgaggcggcgaac
cgaacttttcgaacggcgaattgtaattttttcgtgccttggacCGGCGA
AATTCACCGTTCACCNCAGCTTGGGAACGGAAAATTGTAATATTATTTCA
ATTATTAGTCCAAGTTTTGATTATTAGTTTAGAGGATTTTACTCCATATA
AAATGCCTCTTGTTTGGGACACGCTGTAAGAGGTTTATTCCTAATTGCCT
TATTCAATTGTAATACCTATAAAAGCAATTCTTTTAGGTTGTTAACCGAT
TGCTATTTTCATCAAGTGCTGACCATACCGTTCGATGTTGGGTATACGAG
TTTGGGGAATGCACGCGTGTCTACCGTGGACACACGCACACTGTTGGTTG
CATGAAAGTTGCCAAAGGATTATGTAAGTTCAGATATTGATTTTGTCCTT
CCTTGTTCaggggttttgctttgtttttggtaggctggcgaataaaaaaa
ttaaccctggcgatttctagattctaggccgacgaattcttagcaagcgt
agtgtattgattagcgtaaatatgtacttgaggcggcgaaccgaactttt
cgaacggcgaattgttattttttcgtgccttggacCGGCGAAATTCACCG
TTCACTGGACCAAAATAAGACCCCTGCTTGTTCAGAAAATACaatcagaa
attttattttatcaaaaaattagaCCTTTTCATTTGGGGTATAATTCACA
CAGTCCTCTTGGGCATTGTTtaagcaattttttttatttgcacTGATCTG
AATCTATTCCAAAAGCATCTAAGTCAACTTTCAGTTTTCAtgccaaaaat
gaaaaagacttTTAATCCTATTAATAATGTTTAGAAACACGAGAGAAAGT
ATTCAAGCAAACTCAATCAGACAGTTTAACCATGGTTTAACTAAATGTTT
CCTTTAACTTCTAGTGTTAACTGGGTCTGGGGATGATACAGCCAAAATCT
TTGACGCGAAATCGGGAACAAACAAACGAACATTCCGTGGACATATTGGC
TCAGTTAATGCACTCGTGGTAAGTAAGGAAATAAACTAAAGTGATTAACN
CAAACAAACGAACATTCCGTGGACATATTGGCTCAGTTAATGCACTCGTG
GTAAGTAAGGAAATACACTAAAGTGATTAACAGAAAGTCGTACAGTCATT
CTTTAGTGTTATGTAgccaaatacaccttttcgatcgtagccgccaattg
ccgtgtgggcatttttttgtccgttttaccaccctaaaaccgtcccagtc
ttttttccgcacctatagacaatagaaaaaggtgtcagaaaaggattgga
tcgagtttggGGGGGGGATACCcgcacggcaattggcggctacggtcgaa
aaggtgtattgtatgTGGAACTTGAAGATAGGGTTGAATGATTTCCTTCA
AGTCAATTAACTAAAGTGGTCAACACAAAGTTGCTTTGAAACTTAACTTG
AGTATATCAACTTGCCCTATTTTGACGTTCGATAACTTCTCTTAACGGAA
GCCAAGACAAGGCAGATCACAGAATCTAAAAAGATGGAATCAattaagaa
taaaataaaacgGTGTCTGAATCCAAGATCTCTACAAAACCGTCGATAGT
ATATAGAAGCACGAATCATTTAATGGATGACAGTAGCCTATATAAAACGG
AGCTACTAGAAAAGTTAAGAAGTATAAAGGAGAAACAGAACTACAACGTA
CATAGAACTTACATTAATTAATAAATCCCAGCCAAAAACGAAGCACAATT
GAAAAGATGTGTCCTTTAAGACTTCTTAACTTAAACTAAGCTCTTTCTAT
GTTTCCTTAGCTACACAAACATAAACTATACACTGGATCAAATGATGGTG
CGATTAGGATTTGGGATGCATCCGGTATCGGTGAAGATGATGACGACGAC
GATGAGGAGGAAGATAGTGGCGTCGTCCCGATGCAGCAAGAACAACAAAC
ACCACAATCTCAATCTCCAGCACCTAGCAACGACGATGCAGCACCGATTA
ATGATGAAAATGCACAACCAGTTAACGAATAATGTATTGTATAAACAATT
TGTAAAACATAAACATTAACATCTTCTTGTGTTGATGATGATGAGGTTGT
TGTTGCCGATGATTTCAAGTCCAACTAATGTCCATCTAACATTCATAAAA
CGTTCGATCGATGATCAAATAACAATGCGTGTAAACCCGGGGACGGAAGA
GGAATAAACTTGGTAAGAAAATGAGACTGATTGAAACAACGCAGAAGAAA
CTATCAACGAcgacaacgaggctcaaaaatgaaAACCTTCTTGAATTATG
GACACGTGACTTCAAATTCTTTGCCACGTGTTTGGGGAAAAGTCCTGTGT
GAAATTGACAATTCCCGAACGGAATCAGAATTGTTTACAACCCTCCTGga
ttttttaatgaatatttAATGATGTTCCTGGAATGATTTTCCTTGACTAT
GAAGACTTAATGAAAAGAGACGAGAAaaaacgaaattaaattctttttgt
aaattttttaactCACTCAGCAAAGCTATACGATACCTGACACTGGTAAT
TCGAGgatcaaaatccaaaaaattacaTGAGTTTTTATAACTTTCAAGTC
ACCCTTAGGGTGTAGAAAAAACTATAAAGTGTCGTCAGTGATTTGCTTGG
TGCGTCCCGCACAAAATATGCATTTCTATATCAGATTGTAttgtttataa
aaaacgtgtttgGAAGTATTTCTGAGACAATTATTTCAAGGGTTTATCGA
ATTTAATGTAATGAATCTGAAGGTGGCCTGTCGCAAAATTTTGCTGCTAT
GACGATAAACATGACGAAATGGAAAAGGATTTTAACGGCTTAATCTtctc
tttgaaaatttatttgtatttacctataaaaattgaaatgggGAAAAAAG
CTGAAACAATATTTCGCAATAATTGAAATAATTCGTGTTTAATTAGCATT
TTAGTGCAAAGATTTTTATATGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071650-exon-scaffold_63-1491911889:412084..413055 | TCONS_00071650-exon-scaffold_63-1491911889:412084..413055 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1510915933:412084..413055 | TCONS_00071650-exon-scaffold_63-1510915933:412084..413055 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1575043694:412084..413055 | TCONS_00071650-exon-scaffold_63-1575043694:412084..413055 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1491911889:413930..414065 | TCONS_00071650-exon-scaffold_63-1491911889:413930..414065 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1510915933:413930..414065 | TCONS_00071650-exon-scaffold_63-1510915933:413930..414065 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1575043694:413930..414065 | TCONS_00071650-exon-scaffold_63-1575043694:413930..414065 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1491911889:415148..415251 | TCONS_00071650-exon-scaffold_63-1491911889:415148..415251 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1510915933:415148..415251 | TCONS_00071650-exon-scaffold_63-1510915933:415148..415251 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1575043694:415148..415251 | TCONS_00071650-exon-scaffold_63-1575043694:415148..415251 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1491911889:416044..417209 | TCONS_00071650-exon-scaffold_63-1491911889:416044..417209 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1510915933:416044..417209 | TCONS_00071650-exon-scaffold_63-1510915933:416044..417209 | Clytia hemisphaerica | exon |
| TCONS_00071650-exon-scaffold_63-1575043694:416044..417209 | TCONS_00071650-exon-scaffold_63-1575043694:416044..417209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:412084..417209 + |
Blast
BLAST of TCONS_00071650 vs. Swiss-Prot (Human)
Match: WDR86 (WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3) HSP 1 Score: 284.648 bits (727), Expect = 2.299e-87 Identity = 144/344 (41.86%), Postives = 205/344 (59.59%), Query Frame = 1
Query: 265 LKEIKEHTAGINSMTLTPDGSMLVSASEDANAHILDTTSEQTVSVLKGHEKYINSVVCNNDFVFTASADKMIRKWRIDTGMCSKTMRGHTCAVNRLMLVDSLLFSSSYDRSARCWHIDTGECLAVFNGHKLGVYPLLY-----IPQSDDSFERDITDLNNNHDILITGSADTTAKSWALNTNEVLLTYKGHNGAVLSMACDNSGKYLFTGSQDSTIRSYVLSTGKPVNVFSGHAASVLQLQVVNRLLFSSSADHTVRCWVYEFGECTRVYRGHTHTVGCMKVAKGLLLTGSGDDTAKIFDAKSGTNKRTFRGHIGSVNALVLHKHKLYTGSNDGAIRIWDASGI 1281
L+ +H GIN ++L+PDG L++ SED A + T Q ++L+GHE Y+ ++ FT SAD IR+W + TG C + RGHT VNR+++ ++ LFSSSYDR+AR W +D G+ F GH+ V L Y +P + + E L L+TGS D TAK W + + T +GH GAVL + D G FTGS D+TIR++ + +G+ + VF H SV+ L++VNRL++S SAD TV+CW+ + GEC R + H V +K G L TGSGD A+ FDA+SG +R FRGH +N + +H LYT S+DGA+R+WD G+
Sbjct: 8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGL------LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVHGQVLYTASHDGALRLWDVRGL 345
The following BLAST results are available for this feature:
|
