TCONS_00071649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071649
Unique NameTCONS_00071649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071649 ID=TCONS_00071649|Name=TCONS_00071649|organism=Clytia hemisphaerica|type=transcript|length=2378bp
aaaaaatataacAGATTGGCGTTATTAGTCTACAACCATAGACATAACGA
ATAAATTTGCATAGTTTTGTTGGTGGTTACGTTCAAAGTCCAGTTGATAT
CTTGTGGCCAAACAAAGCGTGTTCTTGAAATCGGGATTTATTGCCAGTcg
ttcatttattttcaaacatttgaagaactttgaaaaaaaatgggTGCAGG
AGCTGGCAAGGAACAAGATggcaacaaaaaacaaaaaatcactaaaaaag
acttaaagtttttcttaaaagaaattaaagaacATACTGCTGGCATTAAC
AGTATGACATTAACACCCGATGGCTCCATGCTGGTGTCCGCCAGTGAAGA
CGCCAACGCCCATATCCTAGACACAACCAGTGAACAAACAGTATCCGTGT
TAAAAGGAcacgaaaaatatataaacTCTGTGGTGTGCAATAACGATTTC
GTGTTCACCGCCTCAGCCGATAAAATGATCCGGAAATGGCGTATAGATAC
AGGCATGTGCTCCAAAACAATGCGTGGCCACACATGCGCCGTAAATCGTC
TCATGCTTGTAGACAGCTTACTTTTTTCATCATCATACGATCGAAGTGCA
AGATGTTGGCATATCGATACTGGTGAATGCCTTGCAGTTTTTAACGGTCA
CAAACTCGGTGTCTACCCATTGTTATACATTCCACAATCAGATGATTCCT
TCGAAAGAGATATCACAGACCTCAATAATAACCACGATATATTAATCACT
GGGTCAGCAGATACTACCGCTAAATCCTGGGCACTTAACACGAATGAGGT
CTTATTGACGTATAAAGGCCATAATGGAGCAGTTTTATCTATGGCATGTG
ACAACAGTGGGAAATATTTGTTCACTGGAAGTCAAGATTCAACTATCCGA
TCATATGTCTTGTCTACAGGAAAGCCTGTCAATGTATTCAGTGGACATGC
CGCTTCAGTGCTACAGTTACAGGTTGTTAACCGATTGCTATTTTCATCAA
GTGCTGACCATACCGTTCGATGTTGGGTATACGAGTTTGGGGAATGCACG
CGTGTCTACCGTGGACACACGCACACTGTTGGTTGCATGAAAGTTGCCAA
AGGATTATTGTTAACTGGGTCTGGGGATGATACAGCCAAAATCTTTGACG
CGAAATCGGGAACAAACAAACGAACATTCCGTGGACATATTGGCTCAGTT
AATGCACTCGTGCTACACAAACATAAACTATACACTGGATCAAATGATGG
TGCGATTAGGATTTGGGATGCATCCGGTATCGGTGAAGATGATGACGACG
ACGATGAGGAGGAAGATAGTGGCGTCGTCCCGATGCAGCAAGAACAACAA
ACACCACAATCTCAATCTCCAGCACCTAGCAACGACGATGCAGCACCGAT
TAATGATGAAAATGCACAACCAGTTAACGAATAATGTATTGTATAAACAA
TTTGTAAAACATAAACATTAACATCTTCTTGTGTTGATGATGATGAGGTT
GTTGTTGCCGATGATTTCAAGTCCAACTAATGTCCATCTAACATTCATAA
AACGTTCGATCGATGATCAAATAACAATGCGTGTAAACCCGGGGACGGAA
GAGGAATAAACTTGGTAAGAAAATGAGACTGATTGAAACAACGCAGAAGA
AACTATCAACGAcgacaacgaggctcaaaaatgaaAACCTTCTTGAATTA
TGGACACGTGACTTCAAATTCTTTGCCACGTGTTTGGGGAAAAGTCCTGT
GTGAAATTGACAATTCCCGAACGGAATCAGAATTGTTTACAACCCTCCTG
gattttttaatgaatatttAATGATGTTCCTGGAATGATTTTCCTTGACT
ATGAAGACTTAATGAAAAGAGACGAGAAaaaacgaaattaaattcttttt
gtaaattttttaactCACTCAGCAAAGCTATACGATACCTGACACTGGTA
ATTCGAGgatcaaaatccaaaaaattacaTGAGTTTTTATAACTTTCAAG
TCACCCTTAGGGTGTAGAAAAAACTATAAAGTGTCGTCAGTGATTTGCTT
GGTGCGTCCCGCACAAAATATGCATTTCTATATCAGATTGTAttgtttat
aaaaaacgtgtttgGAAGTATTTCTGAGACAATTATTTCAAGGGTTTATC
GAATTTAATGTAATGAATCTGAAGGTGGCCTGTCGCAAAATTTTGCTGCT
ATGACGATAAACATGACGAAATGGAAAAGGATTTTAACGGCTTAATCTtc
tctttgaaaatttatttgtatttacctataaaaattgaaatgggGAAAAA
AGCTGAAACAATATTTCGCAATAATTGAAATAATTCGTGTTTAATTAGCA
TTTTAGTGCAAAGATTTTTATATGGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_63:412084..417209+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071649 ID=TCONS_00071649|Name=TCONS_00071649|organism=Clytia hemisphaerica|type=transcript|length=5126bp|location=Sequence derived from alignment at scaffold_63:412084..417209+ (Clytia hemisphaerica)
aaaaaatataacAGATTGGCGTTATTAGTCTACAACCATAGACATAACGA
ATAAATTTGCATAGTTTTGTTGGTGGTTACGTTCAAAGTCCAGTTGATAT
CTTGTGGCCAAACAAAGCGTGTTCTTGAAATCGGGATTTATTGCCAGTcg
ttcatttattttcaaacatttgaagaactttgaaaaaaaatgggTGCAGG
AGCTGGCAAGGAACAAGATggcaacaaaaaacaaaaaatcactaaaaaag
acttaaagtttttcttaaaagaaattaaagaacATACTGCTGGCATTAAC
AGTATGACATTAACACCCGATGGCTCCATGCTGGTGTCCGCCAGTGAAGA
CGCCAACGCCCATATCCTAGACACAACCAGTGAACAAACAGTATCCGTGT
TAAAAGGAcacgaaaaatatataaacTCTGTGGTGTGCAATAACGATTTC
GTGTTCACCGCCTCAGCCGATAAAATGATCCGGAAATGGCGTATAGATAC
AGGCATGTGCTCCAAAACAATGCGTGGCCACACATGCGCCGTAAATCGTC
TCATGCTTGTAGACAGCTTACTTTTTTCATCATCATACGATCGAAGTGCA
AGATGTTGGCATATCGATACTGGTGAATGCCTTGCAGTTTTTAACGGTCA
CAAACTCGGTGTCTACCCATTGTTATACATTCCACAATCAGATGATTCCT
TCGAAAGAGATATCACAGACCTCAATAATAACCACGATATATTAATCACT
GGGTCAGCAGATACTACCGCTAAATCCTGGGCACTTAACACGAATGAGGT
CTTATTGACGTATAAAGGCCATAATGGAGCAGTTTTATCTATGGCATGTG
ACAACAGTGGGAAATATTTGTTCACTGGAAGTCAAGATTCAACTATCCGA
TCATATGTCTTGTCTACAGGAAAGCCTGTCAATGTATTCAGTGGACATGC
CGCTTCAGTGCTACAGTTACAGGTGAGATAATGATAAGTTTTTTTTCCAG
ACATACTGTATTTTGTGATGTTTGTGACATTCACACATGTAATATTTGTA
GCTTGGTTTAAattacaccccttctcacagacccggcaGGATTTATTCAG
CCATTgcggataaaaataacggacagAAACTCGATGGCATAGATATCTTT
TTtgactggggatttcaattctttcggtttcaagttagaaaattcagtgg
ggatgggaaaaataacataatattttccagtgaggattggtttatttgat
tattttcatcgGGGATAAAAATTGGCGGATAGTtctccaccggggacgat
atttcggccaagttttccagtgggaaggggtccgtAAGGGTCTGTAAGAA
AGGGGTATTAAATTACTCATTAAAGAGTCTCAGCATGATTTGAGGACGCA
GATCCGCAACCGCAAGTACCATCTACTTTCTTTGATCCATAATAAAAACA
TGGTTGGTATTCTGCCATAGGAATTTAAATAGCTTAATCATTCATAACTT
TTAAATATTCCAAGAATGAAAGGCACCTATGATTTTTCTTCCTAGAAATG
GTTTGTATTATACAttgtgtcccgaaaaaaagcggacaaatttctatata
aagtaaaatccacATTATTCACGCCAAATTGATAACTTGTATGCTTGACA
TTTCAATCTaaaaaacctattcaatcagCTTGGGAACGGAAAATTGTAAT
ATTATTTCAATTATTAGTCCAAGTTTTGATTATTAGTTTAGAGGATTTTA
CTCCATATAAAATGCCTCTTGTTTGGGACACGCTGTAAGAGGTTTATTCC
TAATTGCCTTATTCAATTGTAATACCTATAAAAGCAATTCTTTTAGGTTG
TTAACCGATTGCTATTTTCATCAAGTGCTGACCATACCGTTCGATGTTGG
GTATACGAGTTTGGGGAATGCACGCGTGTCTACCGTGGACACACGCACAC
TGTTGGTTGCATGAAAGTTGCCAAAGGATTATGTAAGTTCAGATATTGAT
TTTGTCCTTCCTTGTTCaggggttttgctttgtttttggtaggctggcga
ataaaaaaattaaccctggcgatttctagattctaggccgacgaattctt
agcaagcgtagtgtattgattagcgtaaatatgtacttgaggcggcgaac
cgaacttttcgaacggcgaattgtaattttttcgtgccttggacCGGCGA
AATTCACCGTTCACCNCAGCTTGGGAACGGAAAATTGTAATATTATTTCA
ATTATTAGTCCAAGTTTTGATTATTAGTTTAGAGGATTTTACTCCATATA
AAATGCCTCTTGTTTGGGACACGCTGTAAGAGGTTTATTCCTAATTGCCT
TATTCAATTGTAATACCTATAAAAGCAATTCTTTTAGGTTGTTAACCGAT
TGCTATTTTCATCAAGTGCTGACCATACCGTTCGATGTTGGGTATACGAG
TTTGGGGAATGCACGCGTGTCTACCGTGGACACACGCACACTGTTGGTTG
CATGAAAGTTGCCAAAGGATTATGTAAGTTCAGATATTGATTTTGTCCTT
CCTTGTTCaggggttttgctttgtttttggtaggctggcgaataaaaaaa
ttaaccctggcgatttctagattctaggccgacgaattcttagcaagcgt
agtgtattgattagcgtaaatatgtacttgaggcggcgaaccgaactttt
cgaacggcgaattgttattttttcgtgccttggacCGGCGAAATTCACCG
TTCACTGGACCAAAATAAGACCCCTGCTTGTTCAGAAAATACaatcagaa
attttattttatcaaaaaattagaCCTTTTCATTTGGGGTATAATTCACA
CAGTCCTCTTGGGCATTGTTtaagcaattttttttatttgcacTGATCTG
AATCTATTCCAAAAGCATCTAAGTCAACTTTCAGTTTTCAtgccaaaaat
gaaaaagacttTTAATCCTATTAATAATGTTTAGAAACACGAGAGAAAGT
ATTCAAGCAAACTCAATCAGACAGTTTAACCATGGTTTAACTAAATGTTT
CCTTTAACTTCTAGTGTTAACTGGGTCTGGGGATGATACAGCCAAAATCT
TTGACGCGAAATCGGGAACAAACAAACGAACATTCCGTGGACATATTGGC
TCAGTTAATGCACTCGTGGTAAGTAAGGAAATAAACTAAAGTGATTAACN
CAAACAAACGAACATTCCGTGGACATATTGGCTCAGTTAATGCACTCGTG
GTAAGTAAGGAAATACACTAAAGTGATTAACAGAAAGTCGTACAGTCATT
CTTTAGTGTTATGTAgccaaatacaccttttcgatcgtagccgccaattg
ccgtgtgggcatttttttgtccgttttaccaccctaaaaccgtcccagtc
ttttttccgcacctatagacaatagaaaaaggtgtcagaaaaggattgga
tcgagtttggGGGGGGGATACCcgcacggcaattggcggctacggtcgaa
aaggtgtattgtatgTGGAACTTGAAGATAGGGTTGAATGATTTCCTTCA
AGTCAATTAACTAAAGTGGTCAACACAAAGTTGCTTTGAAACTTAACTTG
AGTATATCAACTTGCCCTATTTTGACGTTCGATAACTTCTCTTAACGGAA
GCCAAGACAAGGCAGATCACAGAATCTAAAAAGATGGAATCAattaagaa
taaaataaaacgGTGTCTGAATCCAAGATCTCTACAAAACCGTCGATAGT
ATATAGAAGCACGAATCATTTAATGGATGACAGTAGCCTATATAAAACGG
AGCTACTAGAAAAGTTAAGAAGTATAAAGGAGAAACAGAACTACAACGTA
CATAGAACTTACATTAATTAATAAATCCCAGCCAAAAACGAAGCACAATT
GAAAAGATGTGTCCTTTAAGACTTCTTAACTTAAACTAAGCTCTTTCTAT
GTTTCCTTAGCTACACAAACATAAACTATACACTGGATCAAATGATGGTG
CGATTAGGATTTGGGATGCATCCGGTATCGGTGAAGATGATGACGACGAC
GATGAGGAGGAAGATAGTGGCGTCGTCCCGATGCAGCAAGAACAACAAAC
ACCACAATCTCAATCTCCAGCACCTAGCAACGACGATGCAGCACCGATTA
ATGATGAAAATGCACAACCAGTTAACGAATAATGTATTGTATAAACAATT
TGTAAAACATAAACATTAACATCTTCTTGTGTTGATGATGATGAGGTTGT
TGTTGCCGATGATTTCAAGTCCAACTAATGTCCATCTAACATTCATAAAA
CGTTCGATCGATGATCAAATAACAATGCGTGTAAACCCGGGGACGGAAGA
GGAATAAACTTGGTAAGAAAATGAGACTGATTGAAACAACGCAGAAGAAA
CTATCAACGAcgacaacgaggctcaaaaatgaaAACCTTCTTGAATTATG
GACACGTGACTTCAAATTCTTTGCCACGTGTTTGGGGAAAAGTCCTGTGT
GAAATTGACAATTCCCGAACGGAATCAGAATTGTTTACAACCCTCCTGga
ttttttaatgaatatttAATGATGTTCCTGGAATGATTTTCCTTGACTAT
GAAGACTTAATGAAAAGAGACGAGAAaaaacgaaattaaattctttttgt
aaattttttaactCACTCAGCAAAGCTATACGATACCTGACACTGGTAAT
TCGAGgatcaaaatccaaaaaattacaTGAGTTTTTATAACTTTCAAGTC
ACCCTTAGGGTGTAGAAAAAACTATAAAGTGTCGTCAGTGATTTGCTTGG
TGCGTCCCGCACAAAATATGCATTTCTATATCAGATTGTAttgtttataa
aaaacgtgtttgGAAGTATTTCTGAGACAATTATTTCAAGGGTTTATCGA
ATTTAATGTAATGAATCTGAAGGTGGCCTGTCGCAAAATTTTGCTGCTAT
GACGATAAACATGACGAAATGGAAAAGGATTTTAACGGCTTAATCTtctc
tttgaaaatttatttgtatttacctataaaaattgaaatgggGAAAAAAG
CTGAAACAATATTTCGCAATAATTGAAATAATTCGTGTTTAATTAGCATT
TTAGTGCAAAGATTTTTATATGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044519XLOC_044519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071649-exon-scaffold_63-1491911889:412084..413055TCONS_00071649-exon-scaffold_63-1491911889:412084..413055Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1510915933:412084..413055TCONS_00071649-exon-scaffold_63-1510915933:412084..413055Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1575043694:412084..413055TCONS_00071649-exon-scaffold_63-1575043694:412084..413055Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1491911889:414471..414606TCONS_00071649-exon-scaffold_63-1491911889:414471..414606Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1510915933:414471..414606TCONS_00071649-exon-scaffold_63-1510915933:414471..414606Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1575043694:414471..414606TCONS_00071649-exon-scaffold_63-1575043694:414471..414606Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1491911889:415148..415214TCONS_00071649-exon-scaffold_63-1491911889:415148..415214Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1510915933:415148..415214TCONS_00071649-exon-scaffold_63-1510915933:415148..415214Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1575043694:415148..415214TCONS_00071649-exon-scaffold_63-1575043694:415148..415214Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1491911889:415297..415333TCONS_00071649-exon-scaffold_63-1491911889:415297..415333Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1510915933:415297..415333TCONS_00071649-exon-scaffold_63-1510915933:415297..415333Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1575043694:415297..415333TCONS_00071649-exon-scaffold_63-1575043694:415297..415333Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1491911889:416044..417209TCONS_00071649-exon-scaffold_63-1491911889:416044..417209Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1510915933:416044..417209TCONS_00071649-exon-scaffold_63-1510915933:416044..417209Clytia hemisphaericaexon
TCONS_00071649-exon-scaffold_63-1575043694:416044..417209TCONS_00071649-exon-scaffold_63-1575043694:416044..417209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:412084..417209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00408918	0.0039876	0	0	0.3805	0.361683	2.17652	2.34278	1.66091	1.64755	1.11858	1.56322	4.65593	3.45414	0.366872	0.32643	0.647714	0.673325	10.2282	8.36053	1.94915	1.82239	0.412595	0.861044	1.40053	3.64402	0.274747	0.311169	0.0726188	0.0647387
Blast
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BLAST of TCONS_00071649 vs. Swiss-Prot (Human)
Match: WDR86 (WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3)

HSP 1 Score: 284.648 bits (727), Expect = 2.299e-87
Identity = 144/344 (41.86%), Postives = 205/344 (59.59%), Query Frame = 1 
Query:  265 LKEIKEHTAGINSMTLTPDGSMLVSASEDANAHILDTTSEQTVSVLKGHEKYINSVVCNNDFVFTASADKMIRKWRIDTGMCSKTMRGHTCAVNRLMLVDSLLFSSSYDRSARCWHIDTGECLAVFNGHKLGVYPLLY-----IPQSDDSFERDITDLNNNHDILITGSADTTAKSWALNTNEVLLTYKGHNGAVLSMACDNSGKYLFTGSQDSTIRSYVLSTGKPVNVFSGHAASVLQLQVVNRLLFSSSADHTVRCWVYEFGECTRVYRGHTHTVGCMKVAKGLLLTGSGDDTAKIFDAKSGTNKRTFRGHIGSVNALVLHKHKLYTGSNDGAIRIWDASGI 1281
            L+   +H  GIN ++L+PDG  L++ SED  A +  T   Q  ++L+GHE Y+      ++  FT SAD  IR+W + TG C +  RGHT  VNR+++ ++ LFSSSYDR+AR W +D G+    F GH+  V  L Y     +P +  + E     L      L+TGS D TAK W + +     T +GH GAVL +  D  G   FTGS D+TIR++ + +G+ + VF  H  SV+ L++VNRL++S SAD TV+CW+ + GEC R +  H   V  +K   G L TGSGD  A+ FDA+SG  +R FRGH   +N + +H   LYT S+DGA+R+WD  G+
Sbjct:    8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGL------LVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVHGQVLYTASHDGALRLWDVRGL 345
The following BLAST results are available for this feature:
BLAST of TCONS_00071649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR862.299e-8741.86WD repeat-containing protein 86 OS=Homo sapiens GN... [more]
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