TCONS_00071644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071644
Unique NameTCONS_00071644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071644 ID=TCONS_00071644|Name=TCONS_00071644|organism=Clytia hemisphaerica|type=transcript|length=818bp
gtgacgtcacaatgtaaaataattttatgtCGTTGTAAAAATATGGCGAT
AGGAGAGATGGTTGCGAGAAAAATGTTCGATCGCCAGAAAAGGTAACCCC
TTACCGAAGAATGATGACACATTACATTGAAGAttgaattttttgcaaaa
ataccaAATCCAGATGGATAACAACGGTGGACAAGCTCCACCTCAAGATC
CCACAGCTTATCAGTATAACAATCCAACCCCTCAACAAGGCTACAATGGA
CAACCCAATACTGTAACAGCACAACCAACTCCTCTATATACTCAAATAGC
TGATAACCAGGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGC
ACCAAACTTTCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCC
CCCAATCCACAACAACCCTACTACCCACCACAGCAACAGCCGCAACAACA
GCTTCTTGGTTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGT
TCATTTCCCAACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAA
GGCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCC
TATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTT
GCTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCT
GTCTGGCACTCATATAAGGTTGATACTGCAGTAGGACAAGGCAATTACAT
AGAAGCAGAACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCA
TCATTATCGGGATCATAG
Run BLAST on NCBI

protein sequence of TCONS_00071644-protein

>TCONS_00071644-protein ID=TCONS_00071644-protein|Name=TCONS_00071644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MDNNGGQAPPQDPTAYQYNNPTPQQGYNGQPNTVTAQPTPLYTQIADNQA
TQDPNMVSQPPQHQTFQQQPSPQPQPQPAPNPQQPYYPPQQQPQQQLLGY
GYQQPPTTAQPAFISQQPMAHQQQVVSPEGVVLNMPKNGTPLQQQPIGQA
GVAVQPPPNHLVCSWLACALCFWPIGLAAVWHSYKVDTAVGQGNYIEAEL
NSKRAKQFSTAAIIIGII
Run BLAST on NCBI

transcript from alignment at scaffold_63:377530..379964+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071644 ID=TCONS_00071644|Name=TCONS_00071644|organism=Clytia hemisphaerica|type=transcript|length=2435bp|location=Sequence derived from alignment at scaffold_63:377530..379964+ (Clytia hemisphaerica)
gtgacgtcacaatgtaaaataattttatgtCGTTGTAAAAATATGGCGAT
AGGAGAGATGGTTGCGAGAAAAATGTTCGATCGCCAGAAAAGGTAACCCC
TTACCGAAGAATGATGACACATTACATTGAAGAttgaattttttgcaaaa
ataccaAATCCAGATGGATAACAACGGTGGACAAGGTCAGTATCTTGACG
CTTTCGATGAGCACCTCGTCGGCACCCTGGGTTGACTTAGCCCAGGGGCC
ACTTATAGCTATTTAATATACAAGTGGCCCGGCGTAATGTGGTAGACTCC
ATTTTTTCGGCTTTGCTCTGAGCACGTAGTGAATTTATTCCACgagatcc
agtccctttttggagaaaaacaaacagatttAACCGATAGTAAAAAATAT
TAAGATATCGATATCCTTTATCTAGTAtatacttcactggactcagctcc
atcaaaatcatcaggaAGCGAAATTCAGTCAGGCAAAGGTTCGCGCACTT
GTCAAGCGGGTGGGAATTGAACCTCGGTCACATGTGCAGCAACCGGGGTt
aataaccactataccaccaCAATACCTTAAAATTCTTTTGAATTGTTCTA
CCAAAGCTCCACCTCAAGATCCCACAGCTTATCAGTATAACAATCCAACC
CCTCAACAAGGCTACAATGGACAACCCAATACTGTAACAGCACAACCAAC
TCCTCTATATACTCAAATAGCTGATAACCAGGCAACACAAGACCCTAATA
TGGTCAGTCAACCTCCTCAGCACCAAACTTTCCAGCAACAACCGTCTCCT
CAGCCTCAGCCACAGCCTGCCCCCAATCCACAACAACCCTACTACCCACC
ACAGCAACAGCCGCAACAACAGCTTCTTGGTTACGGCTACCAGCAGCCAC
CAACAACTGCACAGCCAGCGTTCATTTCCCAACAGCCAATGGCACACCAA
CAACAGGTAATATCTTCATCTCATTTTTTATCGGGAACTTTTCTCGTTAT
TGCAAAGACCTGTCCTTTCTCTTGAGTTGCTAAATGTTAGTCACCACAGC
AGGGCCCACGCCACCGGGAAGGCTAGGGAGCCCTGTCCCCccttttttgc
aaagtaaaaatttttggttgcgcctccttagactctatattcATTGCCCC
CACTTTCAATTTAATGGCGTGGGCCCTGCACGGACGAAAGGAATGGATTC
CTGTGATAACAATTTTTATACGTGTTCACTGTTTTTATGATAATCTCATG
CTCATTCTCAACCACACATTTTTCAATCTTGTAAAGCCCTACCTAAACGT
CTGCATAATATTGCTGTTTACCGAGTTTATCTTACTTCAAAATAGGTTTT
AGTTTGGTCGGGGTTTAGTTGAAGATTGTTTAAAACTAGATTTTCGGGAT
TTTCTCTAAAATgctgaatttttttccattataGGTAGTTAGCCCAGAAG
GCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCT
ATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTG
CTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTG
TCTGGCACTCATATAAGGTAATGTTATGCAGCTGATTtatatacactctt
ttttataagagaatGAATAATGGTCTTCGTCAAATAGTGATTGAGTATGt
ggcaattttttgaaaagcccCTTCCCCCTAATATCACTGTTGATATGAGC
TCTTTCTGAGCATGGTGGCAACCTTTCCACCAATCAACATTGATACTAGC
GGGGGAAGGGAATTCTTGCCACAATATTTAATCACAGATTTTAGATATAA
TTTAAATGCCATCATGAATATGTTTTAATGAGCTAACTAATGATGTAAAA
CTACTACATACAGAAAAAAGTTAGCCAAACACTACAGAAGCTCATCCAAG
ACGGAACAAGCCAAAAGCGTTGAGATTGAGATACTTGGCTCCTTGCAGTG
GCAATAATTATATATCTGTTACTTTTATTTCTGCACCTTaggctccctgc
ggtggcaataatTACAtgtattttacttttatttccGCAGGTTGATACTG
CAGTAGGACAAGGCAATTACATCGAAGCAGAACTCAATTCAAAACGTGCC
AAACAGTTTTCAACTGTTGCCATCGTTATCGGGATCATAGGAATAATATT
AATAGCCATCCAATTACAAGCATGATTCAAgatagaaatataaaaaatat
aattatatATCTGTTACTTTTATTTCTGCACTTTAAGCTCCTTGCGGTGG
CAATAATTATGTgtcttttacttttatttccGCAGGTTGATACTGCGGTA
GGACAAGGCAATTACATAGAAGCAGAACTCAATTCAAAACGCGCCAAACA
GTTTTCAACTGCTGCCATCATTATCGGGATCATAG

Coding sequence (CDS) from alignment at scaffold_63:377530..379964+

>TCONS_00071644 ID=TCONS_00071644|Name=TCONS_00071644|organism=Clytia hemisphaerica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_63:377530..379964+ (Clytia hemisphaerica)
ATGGATAACAACGGTGGACAAGCTCCACCTCAAGATCCCACAGCTTATCA
GTATAACAATCCAACCCCTCAACAAGGCTACAATGGACAACCCAATACTG
TAACAGCACAACCAACTCCTCTATATACTCAAATAGCTGATAACCAGGCA
ACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGCACCAAACTTTCCA
GCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCCCCCAATCCACAAC
AACCCTACTACCCACCACAGCAACAGCCGCAACAACAGCTTCTTGGTTAC
GGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGTTCATTTCCCAACA
GCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAAGGCGTGGTACTTA
ATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCTATTGGTCAAGCA
GGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTGCTCCTGGCTTGC
TTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTGTCTGGCACTCAT
ATAAGGTTGATACTGCAGTAGGACAAGGCAATTACATAGAAGCAGAACTC
AATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCATCATTATCGGGAT
CATAATGGATAACAACGGTGGACAAGCTCCACCTCAAGATCCCACAGCTT
ATCAGTATAACAATCCAACCCCTCAACAAGGCTACAATGGACAACCCAAT
ACTGTAACAGCACAACCAACTCCTCTATATACTCAAATAGCTGATAACCA
GGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGCACCAAACTT
TCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCCCCCAATCCA
CAACAACCCTACTACCCACCACAGCAACAGCCGCAACAACAGCTTCTTGG
TTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGTTCATTTCCC
AACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAAGGCGTGGTA
CTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCTATTGGTCA
AGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTGCTCCTGGC
TTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTGTCTGGCAC
TCATATAAGGTTGATACTGCAGTAGGACAAGGCAATTACATAGAAGCAGA
ACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCATCATTATCG
GGATCATAATGGATAACAACGGTGGACAAGCTCCACCTCAAGATCCCACA
GCTTATCAGTATAACAATCCAACCCCTCAACAAGGCTACAATGGACAACC
CAATACTGTAACAGCACAACCAACTCCTCTATATACTCAAATAGCTGATA
ACCAGGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGCACCAA
ACTTTCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCCCCCAA
TCCACAACAACCCTACTACCCACCACAGCAACAGCCGCAACAACAGCTTC
TTGGTTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGTTCATT
TCCCAACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAAGGCGT
GGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCTATTG
GTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTGCTCC
TGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTGTCTG
GCACTCATATAAGGTTGATACTGCAGTAGGACAAGGCAATTACATAGAAG
CAGAACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCATCATT
ATCGGGATCATAATGGATAACAACGGTGGACAAGCTCCACCTCAAGATCC
CACAGCTTATCAGTATAACAATCCAACCCCTCAACAAGGCTACAATGGAC
AACCCAATACTGTAACAGCACAACCAACTCCTCTATATACTCAAATAGCT
GATAACCAGGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGCA
CCAAACTTTCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCCC
CCAATCCACAACAACCCTACTACCCACCACAGCAACAGCCGCAACAACAG
CTTCTTGGTTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGTT
CATTTCCCAACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAAG
GCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCT
ATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTG
CTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTG
TCTGGCACTCATATAAGGTTGATACTGCAGTAGGACAAGGCAATTACATA
GAAGCAGAACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCAT
CATTATCGGGATCATAATGGATAACAACGGTGGACAAGCTCCACCTCAAG
ATCCCACAGCTTATCAGTATAACAATCCAACCCCTCAACAAGGCTACAAT
GGACAACCCAATACTGTAACAGCACAACCAACTCCTCTATATACTCAAAT
AGCTGATAACCAGGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTC
AGCACCAAACTTTCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCT
GCCCCCAATCCACAACAACCCTACTACCCACCACAGCAACAGCCGCAACA
ACAGCTTCTTGGTTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAG
CGTTCATTTCCCAACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCA
GAAGGCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCA
GCCTATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAG
TTTGCTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCT
GCTGTCTGGCACTCATATAAGGTTGATACTGCAGTAGGACAAGGCAATTA
CATAGAAGCAGAACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTG
CCATCATTATCGGGATCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044517XLOC_044517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071644-exon-scaffold_63-1491911889:377530..377714TCONS_00071644-exon-scaffold_63-1491911889:377530..377714Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1510915933:377530..377714TCONS_00071644-exon-scaffold_63-1510915933:377530..377714Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1575043694:377530..377714TCONS_00071644-exon-scaffold_63-1575043694:377530..377714Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1491911889:378136..378485TCONS_00071644-exon-scaffold_63-1491911889:378136..378485Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1510915933:378136..378485TCONS_00071644-exon-scaffold_63-1510915933:378136..378485Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1575043694:378136..378485TCONS_00071644-exon-scaffold_63-1575043694:378136..378485Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1491911889:378964..379146TCONS_00071644-exon-scaffold_63-1491911889:378964..379146Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1510915933:378964..379146TCONS_00071644-exon-scaffold_63-1510915933:378964..379146Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1575043694:378964..379146TCONS_00071644-exon-scaffold_63-1575043694:378964..379146Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1491911889:379620..379641TCONS_00071644-exon-scaffold_63-1491911889:379620..379641Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1510915933:379620..379641TCONS_00071644-exon-scaffold_63-1510915933:379620..379641Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1575043694:379620..379641TCONS_00071644-exon-scaffold_63-1575043694:379620..379641Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1491911889:379887..379964TCONS_00071644-exon-scaffold_63-1491911889:379887..379964Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1510915933:379887..379964TCONS_00071644-exon-scaffold_63-1510915933:379887..379964Clytia hemisphaericaexon
TCONS_00071644-exon-scaffold_63-1575043694:379887..379964TCONS_00071644-exon-scaffold_63-1575043694:379887..379964Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071644-proteinTCONS_00071644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:377530..379964 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0284043	0	0	0.0392806	0.03104	0	0	0	0	0	0.019399	0	0	0	0	0	0	0	0	0	0	0	0	85.1742	25.6332	0.0399401	0	0.0323297	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007593CD225/Dispanin_fam
Vocabulary: Biological Process
TermDefinition
GO:0009607response to biotic stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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