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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071643 ID=TCONS_00071643|Name=TCONS_00071643|organism=Clytia hemisphaerica|type=transcript|length=818bp
gtgacgtcacaatgtaaaataattttatgtCGTTGTAAAAATATGGCGAT
AGGAGAGATGGTTGCGAGAAAAATGTTCGATCGCCAGAAAAGGTAACCCC
TTACCGAAGAATGATGACACATTACATTGAAGAttgaattttttgcaaaa
ataccaAATCCAGATGGATAACAACGGTGGACAAGCTCCACCTCAAGATC
CCACAGCTTATCAGTATAACAATCCAACCCCTCAACAAGGCTACAATGGA
CAACCCAATACTGTAACAGCACAACCAACTCCTCTATATACTCAAATAGC
TGATAACCAGGCAACACAAGACCCTAATATGGTCAGTCAACCTCCTCAGC
ACCAAACTTTCCAGCAACAACCGTCTCCTCAGCCTCAGCCACAGCCTGCC
CCCAATCCACAACAACCCTACTACCCACCACAGCAACAGCCGCAACAACA
GCTTCTTGGTTACGGCTACCAGCAGCCACCAACAACTGCACAGCCAGCGT
TCATTTCCCAACAGCCAATGGCACACCAACAACAGGTAGTTAGCCCAGAA
GGCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCC
TATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTT
GCTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCT
GTCTGGCACTCATATAAGGTTGATACTGCGGTAGGACAAGGCAATTACAT
AGAAGCAGAACTCAATTCAAAACGCGCCAAACAGTTTTCAACTGCTGCCA
TCATTATCGGGATCATAG Run BLAST on NCBI transcript from alignment at scaffold_63:377530..379964+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071643 ID=TCONS_00071643|Name=TCONS_00071643|organism=Clytia hemisphaerica|type=transcript|length=2435bp|location=Sequence derived from alignment at scaffold_63:377530..379964+ (Clytia hemisphaerica)
gtgacgtcacaatgtaaaataattttatgtCGTTGTAAAAATATGGCGAT
AGGAGAGATGGTTGCGAGAAAAATGTTCGATCGCCAGAAAAGGTAACCCC
TTACCGAAGAATGATGACACATTACATTGAAGAttgaattttttgcaaaa
ataccaAATCCAGATGGATAACAACGGTGGACAAGGTCAGTATCTTGACG
CTTTCGATGAGCACCTCGTCGGCACCCTGGGTTGACTTAGCCCAGGGGCC
ACTTATAGCTATTTAATATACAAGTGGCCCGGCGTAATGTGGTAGACTCC
ATTTTTTCGGCTTTGCTCTGAGCACGTAGTGAATTTATTCCACgagatcc
agtccctttttggagaaaaacaaacagatttAACCGATAGTAAAAAATAT
TAAGATATCGATATCCTTTATCTAGTAtatacttcactggactcagctcc
atcaaaatcatcaggaAGCGAAATTCAGTCAGGCAAAGGTTCGCGCACTT
GTCAAGCGGGTGGGAATTGAACCTCGGTCACATGTGCAGCAACCGGGGTt
aataaccactataccaccaCAATACCTTAAAATTCTTTTGAATTGTTCTA
CCAAAGCTCCACCTCAAGATCCCACAGCTTATCAGTATAACAATCCAACC
CCTCAACAAGGCTACAATGGACAACCCAATACTGTAACAGCACAACCAAC
TCCTCTATATACTCAAATAGCTGATAACCAGGCAACACAAGACCCTAATA
TGGTCAGTCAACCTCCTCAGCACCAAACTTTCCAGCAACAACCGTCTCCT
CAGCCTCAGCCACAGCCTGCCCCCAATCCACAACAACCCTACTACCCACC
ACAGCAACAGCCGCAACAACAGCTTCTTGGTTACGGCTACCAGCAGCCAC
CAACAACTGCACAGCCAGCGTTCATTTCCCAACAGCCAATGGCACACCAA
CAACAGGTAATATCTTCATCTCATTTTTTATCGGGAACTTTTCTCGTTAT
TGCAAAGACCTGTCCTTTCTCTTGAGTTGCTAAATGTTAGTCACCACAGC
AGGGCCCACGCCACCGGGAAGGCTAGGGAGCCCTGTCCCCccttttttgc
aaagtaaaaatttttggttgcgcctccttagactctatattcATTGCCCC
CACTTTCAATTTAATGGCGTGGGCCCTGCACGGACGAAAGGAATGGATTC
CTGTGATAACAATTTTTATACGTGTTCACTGTTTTTATGATAATCTCATG
CTCATTCTCAACCACACATTTTTCAATCTTGTAAAGCCCTACCTAAACGT
CTGCATAATATTGCTGTTTACCGAGTTTATCTTACTTCAAAATAGGTTTT
AGTTTGGTCGGGGTTTAGTTGAAGATTGTTTAAAACTAGATTTTCGGGAT
TTTCTCTAAAATgctgaatttttttccattataGGTAGTTAGCCCAGAAG
GCGTGGTACTTAATATGCCCAAGAACGGAACACCCCTTCAACAGCAGCCT
ATTGGTCAAGCAGGTGTTGCCGTACAGCCACCGCCTAATCATTTAGTTTG
CTCCTGGCTTGCTTGTGCATTGTGTTTTTGGCCCATTGGTTTGGCTGCTG
TCTGGCACTCATATAAGGTAATGTTATGCAGCTGATTtatatacactctt
ttttataagagaatGAATAATGGTCTTCGTCAAATAGTGATTGAGTATGt
ggcaattttttgaaaagcccCTTCCCCCTAATATCACTGTTGATATGAGC
TCTTTCTGAGCATGGTGGCAACCTTTCCACCAATCAACATTGATACTAGC
GGGGGAAGGGAATTCTTGCCACAATATTTAATCACAGATTTTAGATATAA
TTTAAATGCCATCATGAATATGTTTTAATGAGCTAACTAATGATGTAAAA
CTACTACATACAGAAAAAAGTTAGCCAAACACTACAGAAGCTCATCCAAG
ACGGAACAAGCCAAAAGCGTTGAGATTGAGATACTTGGCTCCTTGCAGTG
GCAATAATTATATATCTGTTACTTTTATTTCTGCACCTTaggctccctgc
ggtggcaataatTACAtgtattttacttttatttccGCAGGTTGATACTG
CAGTAGGACAAGGCAATTACATCGAAGCAGAACTCAATTCAAAACGTGCC
AAACAGTTTTCAACTGTTGCCATCGTTATCGGGATCATAGGAATAATATT
AATAGCCATCCAATTACAAGCATGATTCAAgatagaaatataaaaaatat
aattatatATCTGTTACTTTTATTTCTGCACTTTAAGCTCCTTGCGGTGG
CAATAATTATGTgtcttttacttttatttccGCAGGTTGATACTGCGGTA
GGACAAGGCAATTACATAGAAGCAGAACTCAATTCAAAACGCGCCAAACA
GTTTTCAACTGCTGCCATCATTATCGGGATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071643-exon-scaffold_63-1491911889:377530..377714 | TCONS_00071643-exon-scaffold_63-1491911889:377530..377714 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1510915933:377530..377714 | TCONS_00071643-exon-scaffold_63-1510915933:377530..377714 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1575043694:377530..377714 | TCONS_00071643-exon-scaffold_63-1575043694:377530..377714 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1491911889:378136..378485 | TCONS_00071643-exon-scaffold_63-1491911889:378136..378485 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1510915933:378136..378485 | TCONS_00071643-exon-scaffold_63-1510915933:378136..378485 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1575043694:378136..378485 | TCONS_00071643-exon-scaffold_63-1575043694:378136..378485 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1491911889:378964..379146 | TCONS_00071643-exon-scaffold_63-1491911889:378964..379146 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1510915933:378964..379146 | TCONS_00071643-exon-scaffold_63-1510915933:378964..379146 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1575043694:378964..379146 | TCONS_00071643-exon-scaffold_63-1575043694:378964..379146 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1491911889:379865..379964 | TCONS_00071643-exon-scaffold_63-1491911889:379865..379964 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1510915933:379865..379964 | TCONS_00071643-exon-scaffold_63-1510915933:379865..379964 | Clytia hemisphaerica | exon |
| TCONS_00071643-exon-scaffold_63-1575043694:379865..379964 | TCONS_00071643-exon-scaffold_63-1575043694:379865..379964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:377530..379964 + |
Blast
The following BLAST results are available for this feature:
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