TCONS_00071642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071642
Unique NameTCONS_00071642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071642 ID=TCONS_00071642|Name=TCONS_00071642|organism=Clytia hemisphaerica|type=transcript|length=1284bp
GTAGGATCGGATGAGAAGCAGAGAATTCGAAGTGCATTAGATGATATCAT
GGAAGCTGCCAGATGTCTTACATTCCAAGAATTCAATGTCGGTGCATCAA
ACGTACCAACAGCCCACGTTCGAGTCATCAAAAGTTCAGGATGTTGGTCA
TTGGTTGGCCGTACAGGACGTCAACAAGATTTATCGTTAGGTAATGGTTG
TGTTTACACTGGTACCATAATTCATGAATTTCTTCACGCTATTGGATTCT
ATCATGAGCAGAGTCGACCTGATCGTGATTCATACATCCGAATCAATTGG
GGGGACATCCAATCAGGACGTGAACATAATTTCAATATACAGAAGAATAT
CAACAGCCTTGGTATCAAGTATGACCCGAAAAGTGTCATGCATTATTCAA
ATGGTGCTTTCGCCAAAAGCAGAGGATTGAAAACGATTGAATGGAAAGCC
GATCCTTCCATGTCTCTTGGTGGACGAGTTTTAACAGCGAGTGATAAACA
ACAAATCAATCTCAAGTACTGTAAAGGACCAGTAACAACTACTACAACTC
GTACCACAAAAACTCGACCAACTCGACCAACAACTCGATCAACTCGACCA
ACAACTCGACCAACCCGACCCACAAAATCCACTGTTAGACCGACAGCTCC
TCCAACTGAAGTTTGTGGTGACAAATCAGGATTTTGTATCAGTGCTCGCC
GATACCAGGGACGTTGCGGGACTCGATTATCCTTTCTCTGTCCAAGATCA
TGCAGAAAATGTACTGGGCCCGAAGATGAGAAATGTTTGAACTTGAAAGA
CCAGCGAAACAATTGTTTGAGGAAATCACAAAAAGGAGAATGTCGAATCC
GTAATTACCGTCGAAAATGGAGAATGAAGAATGATTGTCCAAGAACATGT
TGCGAACGTGGTGAGCTTTATAAATAAGTACGTTATAAGGAAACTTTAAG
GTTAGATACacattttcgaccgtagccgccattaatcgcgcgggcatttt
ttgttcgttttaccaccctaaaaccgtcctagtcttttttcgcaactata
gacgaacgatagaaaataatataaaaaaggattggatcgagtttaggggg
ataattaaataataaagtcacacgcgcctgaccgcgcgactacggtcgaa
aatgtGTATTAGATTGAAAGTTTCTGAAATTCATTTTAACATTCACGTTT
ATTAAAAAATAGGAGTTCTTTGATGAAATGAATTTGAGTATCCTcgagaa
attattttttgtagtCTTTCTTTACGACGCAGTT
Run BLAST on NCBI

protein sequence of TCONS_00071642-protein

>TCONS_00071642-protein ID=TCONS_00071642-protein|Name=TCONS_00071642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
VGSDEKQRIRSALDDIMEAARCLTFQEFNVGASNVPTAHVRVIKSSGCWS
LVGRTGRQQDLSLGNGCVYTGTIIHEFLHAIGFYHEQSRPDRDSYIRINW
GDIQSGREHNFNIQKNINSLGIKYDPKSVMHYSNGAFAKSRGLKTIEWKA
DPSMSLGGRVLTASDKQQINLKYCKGPVTTTTTRTTKTRPTRPTTRSTRP
TTRPTRPTKSTVRPTAPPTEVCGDKSGFCISARRYQGRCGTRLSFLCPRS
CRKCTGPEDEKCLNLKDQRNNCLRKSQKGECRIRNYRRKWRMKNDCPRTC
CERGELYK
Run BLAST on NCBI

transcript from alignment at scaffold_63:370620..373184+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071642 ID=TCONS_00071642|Name=TCONS_00071642|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at scaffold_63:370620..373184+ (Clytia hemisphaerica)
GTAGGATCGGATGAGAAGCAGAGAATTCGAAGTGCATTAGATGATATCAT
GGAAGCTGCCAGATGTCTTACATTCCAAGAATTCAATGTCGGTGCATCAA
ACGTACCAACAGCCCACGTTCGAGTCATCAAAAGTTCAGGGTAAGGTACC
AGTGAACTGTCTCATACCCAGAGCCACTTACACTAATTTTTTGTACTTCA
ATGATGGACGTGGAGATAATCGTCTGCGCAATCAGAgttataaaaaacaa
actaagGGACTGTGTTCGAGCTTGGGAGATGAGTTGTCGAAAACATGGAA
GGCCCAATCTAATAGGGGAAGGCATTAACAAGAAAGCTTAAGTCCCTCAc
tattttggtaaaaaatatttctgagCCTTGAAGGCACTAAATCAACACGT
TTAGCCCCTCAATTTTTAAAATCTGTGTTTAAAACCATAGCAGACTTCTT
TAATTTACTCATCTCTAACACTGAGTCCCTGAGTTCAACTCTCAAACCTG
CATTTCTTACAAACCTTTGAtaattcaaatttctaaatAATTTCTTATAA
TTACTTTTTCTTTAATTCTTTCCAAAAGTCCGTGGATCATCTGCGCTTAT
CTCGGGTAACTCCTGCAATCACAAATTTACTCCTCTCCGTCTCATGGCTC
TCCTAAAGTCCCAATATTTCGATACCACCAATCAACTCTTATAATAATCA
TTATGAAGTTTTAGACAGAAATTTCTAACCTGTGTCTATTTTTTAGATGT
TGGTCATTGGTTGGCCGTACAGGACGTCAACAAGATTTATCGTTAGGTAA
TGGTTGTGTTTACACTGGTACCATAATTCATGAATTTCTTCACGCTATTG
GATTCTATCATGAGCAGAGTCGACCTGATCGTGATTCATACATCCGAATC
AATTGGGGGGACATCCAATCAGGACGTGAACATAATTTCAATATACAGAA
GAATATCAACAGCCTTGGTATCAAGTATGACCCGAAAAGTGTCATGCATT
ATTCAAAGTAAATTATTTTACCGTACCtcgtaaaaaatttttttataaaa
agcgtGTGCAAATCCCATGAGATTGTTGGTTTCAAAGAGCTTTTAAGGGC
AACCCTGTTTCTTTAATCTCCAAACCAtggaaagtgaaatttccatACAT
ATTATAGTaccaagattttctttttccatatcggaatttcatttttctcc
atTGGCTTATATTTTTGCGATGAGTAGAAGACACAAATTcaggaaaaaat
attaaaaggtGGTAGAGTAAGATTCGTTGAACACGGAACTTGTACAGAGC
TTAATTCTTACCTCTCAACTTTACAGTGGTGCTTTCGCCAAAAGCAGAGG
ATTGAAAACGATTGAATGGAAAGCCGATCCTTCCATGTCTCTTGGTGGAC
GAGTTTTAACAGCGAGTGATAAACAACAAATCAATCTCAAGTACTGTAAA
GGACCAGTAACAACTACTACAACTCGTACCACAAAAACTCGACCAACTCG
ACCAACAACTCGATCAACTCGACCAACAACTCGACCAACCCGACCCACAA
AATCCACTGTTAGACCGACAGCTCCTCCAACTGAAGGTAAGTCAACAAAT
ATCAACAAATGAAAATTCTTTACCGCACTCAATAATCCAAAGTCATATTT
TCCGAGGGTAAAATAAATTTGAGACCCCAAACAAAAGCttccttttgttt
ctttccttaATCGTAAACAGCATCATACCAAGATGGTATATgggaaataa
acaaaaatcgatCTCGGTGACGACAGGAAAGAACATTTCACTTATCATAA
GAtcggaaaaaactttttgctgaaaaattcttccccaacgaaaaattctt
aaaagaCGTTCCAGACCCTTCTTCTGTAAGAATGTAAAAGTAGAAAGAAA
GACCTTACTTTTTACTGTATGAATAATCTATTCTACTCGTAGTTTGTGGT
GACAAATCAGGATTTTGTATCAGTGCTCGCCGATACCAGGGACGTTGCGG
GACTCGATTATCCTTTCTCTGTCCAAGATCATGCAGAAAATGTACTGGGC
CCGAAGATGAGAAATGTTTGAACTTGAAAGACCAGCGAAACAATTGTTTG
AGGAAATCACAAAAAGGAGAATGTCGAATCCGTAATTACCGTCGAAAATG
GAGAATGAAGAATGATTGTCCAAGAACATGTTGCGAACGTGGTGAGCTTT
ATAAATAAGTACGTTATAAGGAAACTTTAAGGTTAGATACacattttcga
ccgtagccgccattaatcgcgcgggcattttttgttcgttttaccaccct
aaaaccgtcctagtcttttttcgcaactatagacgaacgatagaaaataa
tataaaaaaggattggatcgagtttagggggataattaaataataaagtc
acacgcgcctgaccgcgcgactacggtcgaaaatgtGTATTAGATTGAAA
GTTTCTGAAATTCATTTTAACATTCACGTTTATTAAAAAATAGGAGTTCT
TTGATGAAATGAATTTGAGTATCCTcgagaaattattttttgtagtCTTT
CTTTACGACGCAGTT

Coding sequence (CDS) from alignment at scaffold_63:370620..373184+

>TCONS_00071642 ID=TCONS_00071642|Name=TCONS_00071642|organism=Clytia hemisphaerica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_63:370620..373184+ (Clytia hemisphaerica)
GTAGGATCGGATGAGAAGCAGAGAATTCGAAGTGCATTAGATGATATCAT
GGAAGCTGCCAGATGTCTTACATTCCAAGAATTCAATGTCGGTGCATCAA
ACGTACCAACAGCCCACGTTCGAGTCATCAAAAGTTCAGGATGTTGGTCA
TTGGTTGGCCGTACAGGACGTCAACAAGATTTATCGTTAGGTAATGGTTG
TGTTTACACTGGTACCATAATTCATGAATTTCTTCACGCTATTGGATTCT
ATCATGAGCAGAGTCGACCTGATCGTGATTCATACATCCGAATCAATTGG
GGGGACATCCAATCAGGACGTGAACATAATTTCAATATACAGAAGAATAT
CAACAGCCTTGGTATCAAGTATGACCCGAAAAGTGTCATGCATTATTCAA
ATGGTGCTTTCGCCAAAAGCAGAGGATTGAAAACGATTGAATGGAAAGCC
GATCCTTCCATGTCTCTTGGTGGACGAGTTTTAACAGCGAGTGATAAACA
ACAAATCAATCTCAAGTACTGTAAAGGACCAGTAACAACTACTACAACTC
GTACCACAAAAACTCGACCAACTCGACCAACAACTCGATCAACTCGACCA
ACAACTCGACCAACCCGACCCACAAAATCCACTGTTAGACCGACAGCTCC
TCCAACTGAAGTTTGTGGTGACAAATCAGGATTTTGTATCAGTGCTCGCC
GATACCAGGGACGTTGCGGGACTCGATTATCCTTTCTCTGTCCAAGATCA
TGCAGAAAATGTACTGGGCCCGAAGATGAGAAATGTTTGAACTTGAAAGA
CCAGCGAAACAATTGTTTGAGGAAATCACAAAAAGGAGAATGTCGAATCC
GTAATTACCGTCGAAAATGGAGAATGAAGAATGATTGTCCAAGAACATGT
TGCGAACGTGGTGAGCTTTATAAATAAGTAGGATCGGATGAGAAGCAGAG
AATTCGAAGTGCATTAGATGATATCATGGAAGCTGCCAGATGTCTTACAT
TCCAAGAATTCAATGTCGGTGCATCAAACGTACCAACAGCCCACGTTCGA
GTCATCAAAAGTTCAGGATGTTGGTCATTGGTTGGCCGTACAGGACGTCA
ACAAGATTTATCGTTAGGTAATGGTTGTGTTTACACTGGTACCATAATTC
ATGAATTTCTTCACGCTATTGGATTCTATCATGAGCAGAGTCGACCTGAT
CGTGATTCATACATCCGAATCAATTGGGGGGACATCCAATCAGGACGTGA
ACATAATTTCAATATACAGAAGAATATCAACAGCCTTGGTATCAAGTATG
ACCCGAAAAGTGTCATGCATTATTCAAATGGTGCTTTCGCCAAAAGCAGA
GGATTGAAAACGATTGAATGGAAAGCCGATCCTTCCATGTCTCTTGGTGG
ACGAGTTTTAACAGCGAGTGATAAACAACAAATCAATCTCAAGTACTGTA
AAGGACCAGTAACAACTACTACAACTCGTACCACAAAAACTCGACCAACT
CGACCAACAACTCGATCAACTCGACCAACAACTCGACCAACCCGACCCAC
AAAATCCACTGTTAGACCGACAGCTCCTCCAACTGAAGTTTGTGGTGACA
AATCAGGATTTTGTATCAGTGCTCGCCGATACCAGGGACGTTGCGGGACT
CGATTATCCTTTCTCTGTCCAAGATCATGCAGAAAATGTACTGGGCCCGA
AGATGAGAAATGTTTGAACTTGAAAGACCAGCGAAACAATTGTTTGAGGA
AATCACAAAAAGGAGAATGTCGAATCCGTAATTACCGTCGAAAATGGAGA
ATGAAGAATGATTGTCCAAGAACATGTTGCGAACGTGGTGAGCTTTATAA
ATAAGTAGGATCGGATGAGAAGCAGAGAATTCGAAGTGCATTAGATGATA
TCATGGAAGCTGCCAGATGTCTTACATTCCAAGAATTCAATGTCGGTGCA
TCAAACGTACCAACAGCCCACGTTCGAGTCATCAAAAGTTCAGGATGTTG
GTCATTGGTTGGCCGTACAGGACGTCAACAAGATTTATCGTTAGGTAATG
GTTGTGTTTACACTGGTACCATAATTCATGAATTTCTTCACGCTATTGGA
TTCTATCATGAGCAGAGTCGACCTGATCGTGATTCATACATCCGAATCAA
TTGGGGGGACATCCAATCAGGACGTGAACATAATTTCAATATACAGAAGA
ATATCAACAGCCTTGGTATCAAGTATGACCCGAAAAGTGTCATGCATTAT
TCAAATGGTGCTTTCGCCAAAAGCAGAGGATTGAAAACGATTGAATGGAA
AGCCGATCCTTCCATGTCTCTTGGTGGACGAGTTTTAACAGCGAGTGATA
AACAACAAATCAATCTCAAGTACTGTAAAGGACCAGTAACAACTACTACA
ACTCGTACCACAAAAACTCGACCAACTCGACCAACAACTCGATCAACTCG
ACCAACAACTCGACCAACCCGACCCACAAAATCCACTGTTAGACCGACAG
CTCCTCCAACTGAAGTTTGTGGTGACAAATCAGGATTTTGTATCAGTGCT
CGCCGATACCAGGGACGTTGCGGGACTCGATTATCCTTTCTCTGTCCAAG
ATCATGCAGAAAATGTACTGGGCCCGAAGATGAGAAATGTTTGAACTTGA
AAGACCAGCGAAACAATTGTTTGAGGAAATCACAAAAAGGAGAATGTCGA
ATCCGTAATTACCGTCGAAAATGGAGAATGAAGAATGATTGTCCAAGAAC
ATGTTGCGAACGTGGTGAGCTTTATAAATAAGTAGGATCGGATGAGAAGC
AGAGAATTCGAAGTGCATTAGATGATATCATGGAAGCTGCCAGATGTCTT
ACATTCCAAGAATTCAATGTCGGTGCATCAAACGTACCAACAGCCCACGT
TCGAGTCATCAAAAGTTCAGGATGTTGGTCATTGGTTGGCCGTACAGGAC
GTCAACAAGATTTATCGTTAGGTAATGGTTGTGTTTACACTGGTACCATA
ATTCATGAATTTCTTCACGCTATTGGATTCTATCATGAGCAGAGTCGACC
TGATCGTGATTCATACATCCGAATCAATTGGGGGGACATCCAATCAGGAC
GTGAACATAATTTCAATATACAGAAGAATATCAACAGCCTTGGTATCAAG
TATGACCCGAAAAGTGTCATGCATTATTCAAATGGTGCTTTCGCCAAAAG
CAGAGGATTGAAAACGATTGAATGGAAAGCCGATCCTTCCATGTCTCTTG
GTGGACGAGTTTTAACAGCGAGTGATAAACAACAAATCAATCTCAAGTAC
TGTAAAGGACCAGTAACAACTACTACAACTCGTACCACAAAAACTCGACC
AACTCGACCAACAACTCGATCAACTCGACCAACAACTCGACCAACCCGAC
CCACAAAATCCACTGTTAGACCGACAGCTCCTCCAACTGAAGTTTGTGGT
GACAAATCAGGATTTTGTATCAGTGCTCGCCGATACCAGGGACGTTGCGG
GACTCGATTATCCTTTCTCTGTCCAAGATCATGCAGAAAATGTACTGGGC
CCGAAGATGAGAAATGTTTGAACTTGAAAGACCAGCGAAACAATTGTTTG
AGGAAATCACAAAAAGGAGAATGTCGAATCCGTAATTACCGTCGAAAATG
GAGAATGAAGAATGATTGTCCAAGAACATGTTGCGAACGTGGTGAGCTTT
ATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044516XLOC_044516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071642-exon-scaffold_63-1491911889:370620..370759TCONS_00071642-exon-scaffold_63-1491911889:370620..370759Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1510915933:370620..370759TCONS_00071642-exon-scaffold_63-1510915933:370620..370759Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1575043694:370620..370759TCONS_00071642-exon-scaffold_63-1575043694:370620..370759Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1491911889:371366..371626TCONS_00071642-exon-scaffold_63-1491911889:371366..371626Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1510915933:371366..371626TCONS_00071642-exon-scaffold_63-1510915933:371366..371626Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1575043694:371366..371626TCONS_00071642-exon-scaffold_63-1575043694:371366..371626Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1491911889:371946..372205TCONS_00071642-exon-scaffold_63-1491911889:371946..372205Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1510915933:371946..372205TCONS_00071642-exon-scaffold_63-1510915933:371946..372205Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1575043694:371946..372205TCONS_00071642-exon-scaffold_63-1575043694:371946..372205Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1491911889:372562..373184TCONS_00071642-exon-scaffold_63-1491911889:372562..373184Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1510915933:372562..373184TCONS_00071642-exon-scaffold_63-1510915933:372562..373184Clytia hemisphaericaexon
TCONS_00071642-exon-scaffold_63-1575043694:372562..373184TCONS_00071642-exon-scaffold_63-1575043694:372562..373184Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071642-proteinTCONS_00071642-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:370620..373184 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0990077	0.163418	0.186836	0.338255	0.268494	0.215617	0	0.199983	0.448108	0.312303	0.304924	0.236807	1.65627	1.03846	2.26293	27.8609	25.2216	4.10213	0.210495	0.153581	0.170324	0.188314	0.152721	0.242417	0.389767	0.38146	3.13157	2.71761	0.183864	0.298563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR003582ShKT_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00071642 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 3.545e-28
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:  109 TAHVRVIKSSGCWSLVG--RTGRQQDLSLGNGCVYTGTIIHEFLHAIGFYHEQSRPDRDSYIRINWGDIQSGREHNFNIQKN--INSLGIKYDPKSVMHYSNGAFAKSRGLKTIEWKADPSMSLGGRV-LTASDKQQINLKY 519
            T ++ V K SGCWS VG  R G+Q+ LS+G  C    T+ HEFLHA+GF+HEQSR DRD Y+RI W  I SGREHNFN   +   +SL + YD  SVMHYS  AF        +   +D    +G R+  + SD  ++N  Y
Sbjct:  113 TNYISVFKGSGCWSSVGNRRVGKQE-LSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253
The following BLAST results are available for this feature:
BLAST of TCONS_00071642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B3.545e-2846.48Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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