TCONS_00071641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071641
Unique NameTCONS_00071641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071641 ID=TCONS_00071641|Name=TCONS_00071641|organism=Clytia hemisphaerica|type=transcript|length=1225bp
CAAAATACAAGATGGCGGACGACTGACTGAGATTTTGCAAGAaaattttC
TTATTATCATAAGAGAAATGGCTAAaggaaaagaagcaaaaaagaaaaag
ttaaagaagAAAGATATCAGCTTGCCGAATAATTTTAAACATAATTACCA
CATGACATATGATAATCGAGAGGGTAATTACATTGGTGTACCTCCACAAT
GGAAAAAATTCCTTGCTAAAGAATTTGAAAGACCAAAACCTTTCATTGAT
CCAAGTGTTGTTACTGAAATACAACCAGGAGCTTTAGTTTTGCAAGCTCA
AACAGTCAGCCCTGGCATGAGACAATCTGCCAGTACAGGAAAAATAAATA
TCGCCAGATCCAATTCTCTACGACAAAACTCGGTAAAGTCCAGAGCTAAA
AACAATAAGGTTGTTGAAGAATCTTCAGAAAACAATGCCCCAAATATGGC
TTTGGATAGAAATAAAGCGGCTACAAGAAGTTTACCAAAGAATGTTTATT
CAGCTCAACGTAAGGAATATTATGAGGCCAGACGTCAACAACAACAGGGA
CAAAATAATGAACCTTCTGATAACATGGATACCAGTGATGGTCCACCGCA
ATCATCAACAGCAATGAGcgataatatttttgtttccccTGACGAATTCA
GGGAAGCATTAAAATTGGTAGTCAATCAAGACGATCCgaaagagattttt
gaaaattttgttaagATTGGTGAAGGTTCAACTGGTGTTGTTTGCATTGC
TAAAGATAAACGTTCTGGTAAACATGTTGCCATTAAAAAGATGGATCTTC
ACAAACAACAAAGGCGAGAATTGCTTTTCAATGAGGTTGTGACGATGAAA
AACTATCACCATACAAATATTATTGAACTTTACGATGCTTACCTTGTCAA
TGAAGAGTTGTGGGTTGTAATGGAATATCTGGATGGTGGTGCATTGACTG
ACTTAGTGACCAACACTCAGTTGAAAGAAGAACACATTGcatatttttgt
aaatgttGCTTGAAAGCTTTGGAGTATCTTCATTCACAAGGTGTTATCCA
CAGAGATATCAAGAGTGACAGTATTTTACTATCCAGAACAGGACAGATCA
AACTATctgattttggtttttgcgCTCAAGTCAGCAATGAGATTCCTAAA
CGTCGATCCTTAGTTGGCACTCCATACTGGATGGCTCCTGAAATCATTGC
TCGTGACTCATACGGTGCTGAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00071641-protein

>TCONS_00071641-protein ID=TCONS_00071641-protein|Name=TCONS_00071641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
KIQDGGRLTEILQENFLIIIREMAKGKEAKKKKLKKKDISLPNNFKHNYH
MTYDNREGNYIGVPPQWKKFLAKEFERPKPFIDPSVVTEIQPGALVLQAQ
TVSPGMRQSASTGKINIARSNSLRQNSVKSRAKNNKVVEESSENNAPNMA
LDRNKAATRSLPKNVYSAQRKEYYEARRQQQQGQNNEPSDNMDTSDGPPQ
SSTAMSDNIFVSPDEFREALKLVVNQDDPKEIFENFVKIGEGSTGVVCIA
KDKRSGKHVAIKKMDLHKQQRRELLFNEVVTMKNYHHTNIIELYDAYLVN
EELWVVMEYLDGGALTDLVTNTQLKEEHIAYFCKCCLKALEYLHSQGVIH
RDIKSDSILLSRTGQIKLSDFGFCAQVSNEIPKRRSLVGTPYWMAPEIIA
RDSYGAEV
Run BLAST on NCBI

transcript from alignment at scaffold_63:209469..218094+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071641 ID=TCONS_00071641|Name=TCONS_00071641|organism=Clytia hemisphaerica|type=transcript|length=8626bp|location=Sequence derived from alignment at scaffold_63:209469..218094+ (Clytia hemisphaerica)
CAAAATACAAGATGGCGGACGACTGACTGAGATTTTGCAAGAaaattttg
taagaaaaatGTATCTTTACTCATAATCTAGTGTAGATTGAACGcgtaag
agccagttttttgtAATCGATACGTAATCGACAGGAACGTAACTTTTATC
atcgattagttatcgattaccGTCAATTATCATCGATTGACCATCGATTG
ATCAATCAGTTCCATCAAtaatgccaaaaacattttgttccaCCACTTTC
ACTTAAAGATAGGCCGCCATAGAATGAACTTTCTTTTATAGGATGAaaca
tattcatgtggctttcagccttgcactccatcgcagaggctatttgagat
attttactaaaactagcccagagaaaaatttttaacctttttattatttg
aatgcatgcctttttaatactcaattcagctcaaatataaaaagattaaa
aaattttaacttggtcattttagtcaaaaaagtcattaaaattgattagt
ctctgtgatggagtgcaaggcaaagccacatgaatatatggttcatccta
taaaagaaagttcattctatggtggcctatcttgaagtgaaggtggttga
acaaaatgtttttggcatattgttGGAACTGTCAATCCATACTAATCGAT
GGTTAATCGATGATGATCGATGGAACGTAACTTTTCGCGTCGATATTAAT
CGTCAATAGTATCGATTACGCATCAATTATTATCGCTTATTATCGATTAT
CATCAATTACCATCGATTATTTTTCCGCATCGATTTCATCGATTGACTAC
GCCtgggattgttcatcgcatatacaatttccagacggtgtcaatcgaac
gaatcgaacgccgaatccattgaacgcaattgaacgcaatcgaataattg
caattcgattgtcgaacgcaatcgaatcgcaatcgaatattacctaggat
ttgctgttcgattgcttcgattacgttcgattgtattcgattacgttcga
ttgtattcgattacgttcgatcgATTTAATTACATTAGaatttattcgct
ttggtaCGGTACTTAAGCACTCGGCCGCCTGCTAAAAAGCCCTaacggag
tgatccaatttaatttaatcaaactcatcaaacataaaCCTAATCGCacg
aaatcgaagattattCAACAATCGAATATAgttcaactatcaatcgaacc
aatctaacagttacatcaaaatgcctcgaaaatgttgatatgaaaattgc
gtaatcagagaacgtatgtctcgcttattataaaaaggccgagacaaact
ttcaataattggattgtaacatcgagttaagtctcttttgttaagtcacc
agggggtaaataaaacagacctttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacgcaatcgaatattaccc
aggaatcggccgttcgattgagattcgattacgttcgacaatcgaatcgc
aattattcgatcgcgttcgattacgttcgattggtgcgattgcgattttt
gttcgaagttgttcgattgacaccgtctggcaatttctacgggaaatcga
aagtaatttcattcagcttgtgatgtttgacagtttgagagcttggatgt
tgggaagctgcaagaataaagccagacgatctcaatcgaacagaatcgac
gatcgaaccagtcgaacaacaatcgaaccaatcgaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ttgagattcaattgcgttcgacaatcgaatttcaatcggtcgattgcgtt
tgatttggtttaattggttcgatcgtcgattcccttcgattgagatcgtc
tggatataATAAATAAGAACGACTTTGAGCTAGGCCTAATatttaaaaga
aaggaaaaggtCTCCAACTCCTGATAAATTGTTGCACTATCTATGATTGG
ATGATATAAGatgctttaaaaaaatcaagaactaAGACAAGTACCGttta
agttggtctaatatagacatcccttgtctaattccgacacccttctttag
agaaaggaattaTATGAAAGCTTgattgaatcactgattgaaaaaggatt
attcctctctgaccaataagcaaagaaaaacagtttcaacctttctataa
atttcagccgATAAAAAGGCTGTCGGAATTTATAGAGGAGGGGTTtcgac
caagttacggtatcaATGGGTAGttcattttgggcaaaaatttcatCCTG
AAACCGTGAGTGGCTATGAGTGGTCTTAAATCAtccaacagccctgccta
atttccaaccccccaaataactgttatgagaaaaattctatgtttacaaa
cattccctctccaagttgaacgataaactaattgcaagaactctcaaaac
aaaacatccaaCAAGacaactttgatgtcaagatgtcaattataatgtga
taaaaaaagcaGGCCATTTTCTAGAAAGACAAGGAAGCGTGAGCTTGGAA
CCAAAAATGGAACTTTTTCTGGTGATTTTCTAACAAAAAGGCAATTTTTG
CTGCTAATTTCAACatatttgtaactttttgttgGGGCAGCGTCCGATAA
TCGGACCCTTAAAAGGCATAAAAAAAAATGGCCTGAAAAGTGCGAGCTGT
TAAAATAATTAtgaattttattctaaaaatattcGTTGTTCGTTTATCTT
GCTTAAAACGTTAACAAATGTTTTGGGTGAATTGCAGAAAAATAGTACTA
TGTCCCGTCCGCATCAGGCACTTTTTGAGGACCCATAGCTCAACTTTGGC
AAATGCAATTTCTAAGAACTTCACATTTTTGTGAACTTTACTAAATAGCC
TTCCTTGGATTGTTATATAATTACAGCCtcaatcttgagaaaaatgtTGC
GGACAGGAGACTTTGTTGCGGACaggacaaaaagtttttcactCATAGCT
AGTACATgtaaagtcaagaaaaatgataCTGCTGCAAAAAGCATGTGGTT
CCCTACAGTTCATTGGCTTGATACAGTTATAACATTAAAGTTGtctcaaa
aaaagagaaattaagACTTTTGTGCCGTTGCGGACGGGACAAATTTCTGG
ACCGTATTggtttttaccagttttaacaaAAGGCAATAAATGTCTTTAAC
GCAAGAAACCATATTAATATGTCACATCAAAACGGAAATCGGGGTCCTCT
AGTTCCCAGATCTTGACTTGTAAGCACAAATGGAGCTTTTGTTGTGGATG
GGACATTGTACTATTTTTCTGCAATTCACCCTTTTAATTTAATgggttca
atgtatcaaatctctcagtttaatTGACACTTCTGGTATCTTTATTAGAT
ATTACATCACAGCGAAaggtcttttttattttattttgtatctTCCCCAt
tggaattaggcagggctgtcaggtacctgatcaacacaaacCAAAAGTCA
AACCAAACCTTTAGTCTTGCGTTtgctctttccttcccaacaactttctc
ttttgcttatgtaggttttaaaattcAGTAATGAACTTCtttagctttat
ctgaataaatctggttgaaaaccttctgttAGGTTTCATTTGGTAAAATT
TTTATCCACATGGTTTGAACCAGTTTCCCCAatttcttgataattaaaaa
ttggaactttcccatGGGTGCGATTGGGTGTAACAgcattgcaaaatatt
tttgtgaaaatttatcTTATTCTAATGGTATAAATTAATCTAgaaaggaa
acaaatattaaatttgactcTCATTTGCTCGTATTTATAAATTTCACAAT
AAAAAGAAccttttacaaattattttctttagcGGGCGTTGAATCGATAT
TGACATATTTAAACATGTCCAATGCTGTGCATCTTATGCCTGCATATTGT
CAGCATCGTGCatattgaagatattttcagttataatccaaggtagaata
AACTTAaaatagaaagggggtattttttagtacTCCATACAATGatgggt
gttttttttttaattctatgtttaaatttttctaccCAGCTTGGTTGCTA
TGTACACGTCCTGACTGATCCAAAGGGCTTTTTTTGTGTGTAAGAAACAT
TCTGCTCGGCGGGTACAACACCAGGTGACAGCTAGTAGATATCTAAAGCC
CTATCACTATCCCAGGCTAAGAAAACTTAAATTTATTGCCTGGGAGAACA
ACTTAGATAAACACCCTTTTTTGTTTATTATCTTTGAATTGAAGTGGGCA
AAGACAACTGCTCAGCTCAATGATGTAGAAAGGTTTTTTAAAGGTATCTT
CAGTTGTAATCCAAGGTAGTAACAAACAGAACATGGAATAGGGGCATTTT
TgatcagtttttttttaattcaatgtcTAGATTTTTCTACCAAGCCCCAT
TGCTATGTGCCCATGTCCTGTTGTTAaaacttttgattgaaattgaaaac
aaaactaaattaAATAGCTCAAGACTGCGTGCAGGTATTATCGAAAAAGT
GAAAGGAAACTTTGATTGAATTAAgttgttctttttcaaaatgtccaatG
TCATTGTAGTGaagaattttggaaattattcccaaaacacaaaaaatgag
AGCGAAATTTAAATTTGACCTGGGACTGTAAGTTTTattaatattttcag
gaaagtATAAATTCAGGGCACAATGCTATTATCTGAACAATTGTGTTCCT
CCCTGAATTAGAAATGCTTACTTTAGGAAAGCAAGTCACGCAGCAATGCA
CGCAAAAAAATGTTGTCATCATATCAGTTGGTTGCTAAAATTagtatgtt
atttttttcaatttcaagctaacTAATGAGTCAAAATTTCTGACCTAAAC
CTATCAATNTAAACATGTCCAATGCTGTGCATCTTATGCCTGCATATTGT
CAGCATCGTGCatattgaagatattttcagttataatccaaggtagaata
AACTTAaaatagaaagggggtattttttagtacTCCATACAATGatgggt
gttttttttttaattctatgtttaaatttttctaccCAGCTTGGTTGCTA
TGTACACGTCCTGACTGATCCAAAGGGCTTTTTTTGTGTGTAAGAAACAT
TCTGCTCGGCGGGTACAACACCAGGTGACAGCTAGTAGATATCTAAAGCC
CTATCACTATCCCAGGCTAAGAAAACTTAAATTTATTGCCTGGGAGAACA
ACTTAGATAAACACCCTTTTTTGTTTATTATCTTTGAATTGAAGTGGGCA
AAGACAACTGCTCAGCTCAATGATGTAGAAAGGTTTTTTAAAGGTATCTT
CAGTGGTAATCCAAGGTAGTAACAAACAGAAAATGGAATAGGGGCATTTT
TGAtcagttttttttgaattcaatGTCTAGATTTTTCTACCAAGCCCCAT
TGCTATGTGCCCATGTCCTGTTGTTAaaacttttgattgaaattgaaaac
aaaactaaattaAATAGCTCAAGACTGCGGGCAGGTATTATCGAAAAAGT
GAAAGGAAACTTTGACTGAATTAAgttgttctttttcaaaatgtccaatG
TCATTGTACTGTAGTGaagaattttggaaattattcccaaaacacaaaaa
aatgagAGCGAAATTTAAATTTGACCTGGGACTGTAAGTTTTattaatat
tttcaggaaagtATAAATTCAGGGCACAATGCTATTATCTGAACAATTGT
GTTCCTCCCTGAATTAGAAATGCTTACTTTAGGAAAGCAAGTCACGCAGC
AATGCACGCAAAAAAATGTTGTCATCATATCAGTTGGTTGCTAAAATTag
tatgttatttttttcaatttcaagctaacTAATGAGTCAAAATTTCTGAC
CTAAACCTATCAATAACTTATAAAATAATGCTTTTTTCAGCTTATTATCA
TAAGAGAAATGGCTAAaggaaaagaagcaaaaaagaaaaagttaaagaag
AAAGATATCAGCTTGCCGAATAATTTTAAACATAATTACCACATGACATA
TGATAATCGAGAGGGTAATTACATTGGTGTACCTCCACAATGGAAAAAAT
TCCTTGCTAAAGAATTTGAAAGACCAAAACCTTTCATTGATCCAAGTGTT
GTTACTGAAATACAACCAGGAGCTTTAGTTTTGCAAGCTCAAACAGTCAG
CCCTGGCATGAGACAATCTGCCAGTACAGGAAAAATAAATATCGCCAGAT
CCAATTCTCTACGACAAAACTCGGTAAAGTCCAGAGCTAAAAACAATAAG
GTTGTTGAAGAATCTTCAGAAAACAATGCCCCAAATATGGCTTTGGATAG
AAATAAAGCGGCTACAAGAAGTTTACCAAAGAATGTTTATTCAGCTCAAC
GTAAGGAATATTATGAGGCCAGACGTCAACAACAACAGGGACAAAATAAT
GAACCTTCTGATAACATGGATACCAGTGATGGTCCACCGCAATCATCAAC
AGCAATGAGcgataatatttttgtttccccTGACGAATTCAGGGAAGCAT
TAAAATTGGTAGTCAATCAAGACGATCCgaaagagatttttgaaaatttt
gttaagATTGGTGAAGGTTCAACTGGTGTTGTTTGCATTGCTAAAGATAA
ACGTTCTGGTAAACATGTTGCCATTAAAAAGATGGATCTTCACAAACAAC
AAAGGCGAGAATTGCTTTTCAATGAGGTatttatttcttgacatttCCGT
TATTTACAGTTTCTGATGTTGGTTGTTTTTcttagaaaatattaaaaata
catttcaaaatttcaagttaaaaGTAGTACATTACTTCAAGTTCCATGTT
ATTGCAATAATCATACGCAAAAATAAACTAAAGTTCCATTTAGTTGGAGT
TATTACTCAAAGGTGTAactcttaaaattaaaaatcttaaaatcttaTTT
TACAGGTTGTGACGATGAAAAACTATCACCATACAAATATTATTGAACTT
TACGATGCTTACCTTGTCAATGAAGAGTTGTGGGTTGTAATGGAATATCT
GGATGGTGGTGCATTGACTGACTTAGTGACCAACACTCAGTATGAACTGT
TCTTATATCTTAATAAATTTCATTTGGTTTGTCAATACAATATTAAGCAA
TGATAATATGATGCTTTACGTTCAAAGTCCTTCCGttttaaactgatttt
tgcCTCAGCGAAGTATAATATAACGAAACTTTTCATTCTCAGATTCAGCA
AAAATCTGTTTCagtctaaatgaaaaaaaaattgctttgactttgaattc
agaaaatttgaatatcttaaaaattatatatttccCAATTATATTAAATA
CAACTATTTAAGTacaatttttttacaattaaaTCTCTATCTGAAATTTT
TAGGTTGAAAGAAGAACACATTGcatatttttgtaaatgttGCTTGAAAG
CTTTGGAGTATCTTCATTCACAAGGTGTTATCCACAGAGATATCAAGAGT
GACAGTATTTTACTATCCAGAACAGGACAGGTAGgtaaaaaaacatcttt
ctcgAATTATGCCCCCAAATGAAGCCAAACATTAGAGTTATGGCCATTAT
CTTTATTGTATACAATATTACCTTCTGCCTTTTCGGGTAGAATCGCTCAA
ATTAGTAAggtcagcattttttaatttacaCTCCTCTCGAGGAAcatgaa
aaaagtatttttggcCTCGTTTCAATGCAGTTAATGATACTCCAACtgat
tttcattcaaaatgggAAGCTTTTACAAATGATTGCAGATTATGTAAGTA
TTTTGGCAACAAAACTTTGAAGCAAGGCCcacattgatttgatttgattc
atCCCGAGAACAGTGTATTAACTCATATTTTGTCTTTTCTTATTCAGATC
AAACTATctgattttggtttttgcgCTCAAGTCAGCAATGAGATTCCTAA
ACGTCGATCCTTAGTTGGCACTCCATACTGGATGGCTCCTGAAATCATTG
CTCGTGACTCATACGGTGCTGAGGTA

Coding sequence (CDS) from alignment at scaffold_63:209469..218094+

>TCONS_00071641 ID=TCONS_00071641|Name=TCONS_00071641|organism=Clytia hemisphaerica|type=CDS|length=6120bp|location=Sequence derived from alignment at scaffold_63:209469..218094+ (Clytia hemisphaerica)
AAAATACAAGATGGCGGACGACTGACTGAGATTTTGCAAGAaaattttCT
TATTATCATAAGAGAAATGGCTAAaggaaaagaagcaaaaaagaaaaagt
taaagaagAAAGATATCAGCTTGCCGAATAATTTTAAACATAATTACCAC
ATGACATATGATAATCGAGAGGGTAATTACATTGGTGTACCTCCACAATG
GAAAAAATTCCTTGCTAAAGAATTTGAAAGACCAAAACCTTTCATTGATC
CAAGTGTTGTTACTGAAATACAACCAGGAGCTTTAGTTTTGCAAGCTCAA
ACAGTCAGCCCTGGCATGAGACAATCTGCCAGTACAGGAAAAATAAATAT
CGCCAGATCCAATTCTCTACGACAAAACTCGGTAAAGTCCAGAGCTAAAA
ACAATAAGGTTGTTGAAGAATCTTCAGAAAACAATGCCCCAAATATGGCT
TTGGATAGAAATAAAGCGGCTACAAGAAGTTTACCAAAGAATGTTTATTC
AGCTCAACGTAAGGAATATTATGAGGCCAGACGTCAACAACAACAGGGAC
AAAATAATGAACCTTCTGATAACATGGATACCAGTGATGGTCCACCGCAA
TCATCAACAGCAATGAGcgataatatttttgtttccccTGACGAATTCAG
GGAAGCATTAAAATTGGTAGTCAATCAAGACGATCCgaaagagatttttg
aaaattttgttaagATTGGTGAAGGTTCAACTGGTGTTGTTTGCATTGCT
AAAGATAAACGTTCTGGTAAACATGTTGCCATTAAAAAGATGGATCTTCA
CAAACAACAAAGGCGAGAATTGCTTTTCAATGAGGTTGTGACGATGAAAA
ACTATCACCATACAAATATTATTGAACTTTACGATGCTTACCTTGTCAAT
GAAGAGTTGTGGGTTGTAATGGAATATCTGGATGGTGGTGCATTGACTGA
CTTAGTGACCAACACTCAGTTGAAAGAAGAACACATTGcatatttttgta
aatgttGCTTGAAAGCTTTGGAGTATCTTCATTCACAAGGTGTTATCCAC
AGAGATATCAAGAGTGACAGTATTTTACTATCCAGAACAGGACAGATCAA
ACTATctgattttggtttttgcgCTCAAGTCAGCAATGAGATTCCTAAAC
GTCGATCCTTAGTTGGCACTCCATACTGGATGGCTCCTGAAATCATTGCT
CGTGACTCATACGGTGCTGAGGTAAAAATACAAGATGGCGGACGACTGAC
TGAGATTTTGCAAGAaaattttCTTATTATCATAAGAGAAATGGCTAAag
gaaaagaagcaaaaaagaaaaagttaaagaagAAAGATATCAGCTTGCCG
AATAATTTTAAACATAATTACCACATGACATATGATAATCGAGAGGGTAA
TTACATTGGTGTACCTCCACAATGGAAAAAATTCCTTGCTAAAGAATTTG
AAAGACCAAAACCTTTCATTGATCCAAGTGTTGTTACTGAAATACAACCA
GGAGCTTTAGTTTTGCAAGCTCAAACAGTCAGCCCTGGCATGAGACAATC
TGCCAGTACAGGAAAAATAAATATCGCCAGATCCAATTCTCTACGACAAA
ACTCGGTAAAGTCCAGAGCTAAAAACAATAAGGTTGTTGAAGAATCTTCA
GAAAACAATGCCCCAAATATGGCTTTGGATAGAAATAAAGCGGCTACAAG
AAGTTTACCAAAGAATGTTTATTCAGCTCAACGTAAGGAATATTATGAGG
CCAGACGTCAACAACAACAGGGACAAAATAATGAACCTTCTGATAACATG
GATACCAGTGATGGTCCACCGCAATCATCAACAGCAATGAGcgataatat
ttttgtttccccTGACGAATTCAGGGAAGCATTAAAATTGGTAGTCAATC
AAGACGATCCgaaagagatttttgaaaattttgttaagATTGGTGAAGGT
TCAACTGGTGTTGTTTGCATTGCTAAAGATAAACGTTCTGGTAAACATGT
TGCCATTAAAAAGATGGATCTTCACAAACAACAAAGGCGAGAATTGCTTT
TCAATGAGGTTGTGACGATGAAAAACTATCACCATACAAATATTATTGAA
CTTTACGATGCTTACCTTGTCAATGAAGAGTTGTGGGTTGTAATGGAATA
TCTGGATGGTGGTGCATTGACTGACTTAGTGACCAACACTCAGTTGAAAG
AAGAACACATTGcatatttttgtaaatgttGCTTGAAAGCTTTGGAGTAT
CTTCATTCACAAGGTGTTATCCACAGAGATATCAAGAGTGACAGTATTTT
ACTATCCAGAACAGGACAGATCAAACTATctgattttggtttttgcgCTC
AAGTCAGCAATGAGATTCCTAAACGTCGATCCTTAGTTGGCACTCCATAC
TGGATGGCTCCTGAAATCATTGCTCGTGACTCATACGGTGCTGAGGTAAA
AATACAAGATGGCGGACGACTGACTGAGATTTTGCAAGAaaattttCTTA
TTATCATAAGAGAAATGGCTAAaggaaaagaagcaaaaaagaaaaagtta
aagaagAAAGATATCAGCTTGCCGAATAATTTTAAACATAATTACCACAT
GACATATGATAATCGAGAGGGTAATTACATTGGTGTACCTCCACAATGGA
AAAAATTCCTTGCTAAAGAATTTGAAAGACCAAAACCTTTCATTGATCCA
AGTGTTGTTACTGAAATACAACCAGGAGCTTTAGTTTTGCAAGCTCAAAC
AGTCAGCCCTGGCATGAGACAATCTGCCAGTACAGGAAAAATAAATATCG
CCAGATCCAATTCTCTACGACAAAACTCGGTAAAGTCCAGAGCTAAAAAC
AATAAGGTTGTTGAAGAATCTTCAGAAAACAATGCCCCAAATATGGCTTT
GGATAGAAATAAAGCGGCTACAAGAAGTTTACCAAAGAATGTTTATTCAG
CTCAACGTAAGGAATATTATGAGGCCAGACGTCAACAACAACAGGGACAA
AATAATGAACCTTCTGATAACATGGATACCAGTGATGGTCCACCGCAATC
ATCAACAGCAATGAGcgataatatttttgtttccccTGACGAATTCAGGG
AAGCATTAAAATTGGTAGTCAATCAAGACGATCCgaaagagatttttgaa
aattttgttaagATTGGTGAAGGTTCAACTGGTGTTGTTTGCATTGCTAA
AGATAAACGTTCTGGTAAACATGTTGCCATTAAAAAGATGGATCTTCACA
AACAACAAAGGCGAGAATTGCTTTTCAATGAGGTTGTGACGATGAAAAAC
TATCACCATACAAATATTATTGAACTTTACGATGCTTACCTTGTCAATGA
AGAGTTGTGGGTTGTAATGGAATATCTGGATGGTGGTGCATTGACTGACT
TAGTGACCAACACTCAGTTGAAAGAAGAACACATTGcatatttttgtaaa
tgttGCTTGAAAGCTTTGGAGTATCTTCATTCACAAGGTGTTATCCACAG
AGATATCAAGAGTGACAGTATTTTACTATCCAGAACAGGACAGATCAAAC
TATctgattttggtttttgcgCTCAAGTCAGCAATGAGATTCCTAAACGT
CGATCCTTAGTTGGCACTCCATACTGGATGGCTCCTGAAATCATTGCTCG
TGACTCATACGGTGCTGAGGTAAAAATACAAGATGGCGGACGACTGACTG
AGATTTTGCAAGAaaattttCTTATTATCATAAGAGAAATGGCTAAagga
aaagaagcaaaaaagaaaaagttaaagaagAAAGATATCAGCTTGCCGAA
TAATTTTAAACATAATTACCACATGACATATGATAATCGAGAGGGTAATT
ACATTGGTGTACCTCCACAATGGAAAAAATTCCTTGCTAAAGAATTTGAA
AGACCAAAACCTTTCATTGATCCAAGTGTTGTTACTGAAATACAACCAGG
AGCTTTAGTTTTGCAAGCTCAAACAGTCAGCCCTGGCATGAGACAATCTG
CCAGTACAGGAAAAATAAATATCGCCAGATCCAATTCTCTACGACAAAAC
TCGGTAAAGTCCAGAGCTAAAAACAATAAGGTTGTTGAAGAATCTTCAGA
AAACAATGCCCCAAATATGGCTTTGGATAGAAATAAAGCGGCTACAAGAA
GTTTACCAAAGAATGTTTATTCAGCTCAACGTAAGGAATATTATGAGGCC
AGACGTCAACAACAACAGGGACAAAATAATGAACCTTCTGATAACATGGA
TACCAGTGATGGTCCACCGCAATCATCAACAGCAATGAGcgataatattt
ttgtttccccTGACGAATTCAGGGAAGCATTAAAATTGGTAGTCAATCAA
GACGATCCgaaagagatttttgaaaattttgttaagATTGGTGAAGGTTC
AACTGGTGTTGTTTGCATTGCTAAAGATAAACGTTCTGGTAAACATGTTG
CCATTAAAAAGATGGATCTTCACAAACAACAAAGGCGAGAATTGCTTTTC
AATGAGGTTGTGACGATGAAAAACTATCACCATACAAATATTATTGAACT
TTACGATGCTTACCTTGTCAATGAAGAGTTGTGGGTTGTAATGGAATATC
TGGATGGTGGTGCATTGACTGACTTAGTGACCAACACTCAGTTGAAAGAA
GAACACATTGcatatttttgtaaatgttGCTTGAAAGCTTTGGAGTATCT
TCATTCACAAGGTGTTATCCACAGAGATATCAAGAGTGACAGTATTTTAC
TATCCAGAACAGGACAGATCAAACTATctgattttggtttttgcgCTCAA
GTCAGCAATGAGATTCCTAAACGTCGATCCTTAGTTGGCACTCCATACTG
GATGGCTCCTGAAATCATTGCTCGTGACTCATACGGTGCTGAGGTAAAAA
TACAAGATGGCGGACGACTGACTGAGATTTTGCAAGAaaattttCTTATT
ATCATAAGAGAAATGGCTAAaggaaaagaagcaaaaaagaaaaagttaaa
gaagAAAGATATCAGCTTGCCGAATAATTTTAAACATAATTACCACATGA
CATATGATAATCGAGAGGGTAATTACATTGGTGTACCTCCACAATGGAAA
AAATTCCTTGCTAAAGAATTTGAAAGACCAAAACCTTTCATTGATCCAAG
TGTTGTTACTGAAATACAACCAGGAGCTTTAGTTTTGCAAGCTCAAACAG
TCAGCCCTGGCATGAGACAATCTGCCAGTACAGGAAAAATAAATATCGCC
AGATCCAATTCTCTACGACAAAACTCGGTAAAGTCCAGAGCTAAAAACAA
TAAGGTTGTTGAAGAATCTTCAGAAAACAATGCCCCAAATATGGCTTTGG
ATAGAAATAAAGCGGCTACAAGAAGTTTACCAAAGAATGTTTATTCAGCT
CAACGTAAGGAATATTATGAGGCCAGACGTCAACAACAACAGGGACAAAA
TAATGAACCTTCTGATAACATGGATACCAGTGATGGTCCACCGCAATCAT
CAACAGCAATGAGcgataatatttttgtttccccTGACGAATTCAGGGAA
GCATTAAAATTGGTAGTCAATCAAGACGATCCgaaagagatttttgaaaa
ttttgttaagATTGGTGAAGGTTCAACTGGTGTTGTTTGCATTGCTAAAG
ATAAACGTTCTGGTAAACATGTTGCCATTAAAAAGATGGATCTTCACAAA
CAACAAAGGCGAGAATTGCTTTTCAATGAGGTTGTGACGATGAAAAACTA
TCACCATACAAATATTATTGAACTTTACGATGCTTACCTTGTCAATGAAG
AGTTGTGGGTTGTAATGGAATATCTGGATGGTGGTGCATTGACTGACTTA
GTGACCAACACTCAGTTGAAAGAAGAACACATTGcatatttttgtaaatg
ttGCTTGAAAGCTTTGGAGTATCTTCATTCACAAGGTGTTATCCACAGAG
ATATCAAGAGTGACAGTATTTTACTATCCAGAACAGGACAGATCAAACTA
TctgattttggtttttgcgCTCAAGTCAGCAATGAGATTCCTAAACGTCG
ATCCTTAGTTGGCACTCCATACTGGATGGCTCCTGAAATCATTGCTCGTG
ACTCATACGGTGCTGAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044515XLOC_044515Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071641-proteinTCONS_00071641-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071641-exon-scaffold_63-1491911889:209469..209517TCONS_00071641-exon-scaffold_63-1491911889:209469..209517Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1510915933:209469..209517TCONS_00071641-exon-scaffold_63-1510915933:209469..209517Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1575043694:209469..209517TCONS_00071641-exon-scaffold_63-1575043694:209469..209517Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1491911889:216009..216794TCONS_00071641-exon-scaffold_63-1491911889:216009..216794Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1510915933:216009..216794TCONS_00071641-exon-scaffold_63-1510915933:216009..216794Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1575043694:216009..216794TCONS_00071641-exon-scaffold_63-1575043694:216009..216794Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1491911889:217024..217157TCONS_00071641-exon-scaffold_63-1491911889:217024..217157Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1510915933:217024..217157TCONS_00071641-exon-scaffold_63-1510915933:217024..217157Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1575043694:217024..217157TCONS_00071641-exon-scaffold_63-1575043694:217024..217157Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1491911889:217472..217598TCONS_00071641-exon-scaffold_63-1491911889:217472..217598Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1510915933:217472..217598TCONS_00071641-exon-scaffold_63-1510915933:217472..217598Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1575043694:217472..217598TCONS_00071641-exon-scaffold_63-1575043694:217472..217598Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1491911889:217966..218094TCONS_00071641-exon-scaffold_63-1491911889:217966..218094Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1510915933:217966..218094TCONS_00071641-exon-scaffold_63-1510915933:217966..218094Clytia hemisphaericaexon
TCONS_00071641-exon-scaffold_63-1575043694:217966..218094TCONS_00071641-exon-scaffold_63-1575043694:217966..218094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:209469..218094 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30466	2.04309	0.751205	0.502852	53.4004	37.2858	27.6547	30.0508	23.2168	23.7279	20.2006	16.1861	12.8658	11.2631	9.31925	9.17111	19.9223	18.4584	7.1641	13.4397	18.9066	17.7358	13.6127	15.8703	20.5826	20.5778	18.2426	13.8992	18.2547	18.7172
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000095CRIB_dom
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00071641 vs. Swiss-Prot (Human)
Match: PAK5 (Serine/threonine-protein kinase PAK 5 OS=Homo sapiens GN=PAK5 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 7.400e-97
Identity = 142/213 (66.67%), Postives = 175/213 (82.16%), Query Frame = 2 
Query:  593 PPQSSTAMSDN--IFVSPDEFREALKLVVNQDDPKEIFENFVKIGEGSTGVVCIAKDKRSGKHVAIKKMDLHKQQRRELLFNEVVTMKNYHHTNIIELYDAYLVNEELWVVMEYLDGGALTDLVTNTQLKEEHIAYFCKCCLKALEYLHSQGVIHRDIKSDSILLSRTGQIKLSDFGFCAQVSNEIPKRRSLVGTPYWMAPEIIARDSYGAEV 1225
            PP S  + SD     VS ++FR AL+LVV+  DP+E   NF+KIGEGSTG+VCIA +K +GK VA+KKMDL KQQRRELLFNEVV M++YHH N++++Y +YLV +ELWVVME+L+GGALTD+VT+T++ EE IA  C   L+AL YLH+QGVIHRDIKSDSILL+  G+IKLSDFGFCAQVS E+PKR+SLVGTPYWMAPE+I+R  YG EV
Sbjct:  412 PPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLANFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEV 624
The following BLAST results are available for this feature:
BLAST of TCONS_00071641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAK57.400e-9766.67Serine/threonine-protein kinase PAK 5 OS=Homo sapi... [more]
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