TCONS_00071632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071632
Unique NameTCONS_00071632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071632 ID=TCONS_00071632|Name=TCONS_00071632|organism=Clytia hemisphaerica|type=transcript|length=921bp
ttctttttagagAAAATAATAAACATTAAGTGACAGAAATTATGGGAAAC
TCGATCAGTCCTCATATAGAAAATGCACAAAAGACTGGTGTCTGTTCTTT
AAAAGCTATGAAATTGAAGGAgCTTCCACCTGAAATCTCAAAGTTACCAA
AAACTCTCAGGACTTTAGAACTATCGAATAATTCATTGAAGAATATTCCA
GATGTCATTGGACAGTTTCAAATGTTGAAGACACTATCTGTTAATCAAAA
TCAATTAGTTGATATATCTCAACAAATTGACAAGCTGATAAAATTGGAAA
CTCTTGCGTTATCTTCAAATCACCTAACATCATTTTCTTTGTCAAATGCT
GGTAAGAtgaaacatttaaaaactgTAAACCTGTCTCACAACCGGTTAAA
ATCGTTTCCCATACATCTTTGTAATCTACCAAATCTAGATGCTCTAGATT
TATCAAATAACTCAATCACAACTTTACCAGATGatgtcaaaaatttaaaa
gctaTTGAGCTGAACTTGAACAATAATAAGTTAAATAGACTTAACAATGG
CTTGTGTCAGTGTGAGCGTCTAAAAGTGTTGCGGGTTGAAGAAAATTGTT
TGGATATCAGCTCAATGACTGAAGCCATACTGAAACAATCAAAGATATCA
TTAATTGCTTTTGATGGGAATACATTTGATATGAAAAAGTTCCAAGAATG
CGATGGATATGAGGAGtatATTTCAAGATATgcagcaacaaagaaaaagg
tTGCTTAATTCTTACTGACATGGTGACACTTCGGGGACACACAAACACTA
TTCAAAGGTATcgcattatttttttcaaataacaaATTTGGTCACCTCTA
CGATCAAGTTGTATTGGGTCTGGTCAAGGAAATTGTGACTAAAATGAATT
ATTTGAATGAAAGTATTATTT
Run BLAST on NCBI

protein sequence of TCONS_00071632-protein

>TCONS_00071632-protein ID=TCONS_00071632-protein|Name=TCONS_00071632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MGNSISPHIENAQKTGVCSLKAMKLKELPPEISKLPKTLRTLELSNNSLK
NIPDVIGQFQMLKTLSVNQNQLVDISQQIDKLIKLETLALSSNHLTSFSL
SNAGKMKHLKTVNLSHNRLKSFPIHLCNLPNLDALDLSNNSITTLPDDVK
NLKAIELNLNNNKLNRLNNGLCQCERLKVLRVEENCLDISSMTEAILKQS
KISLIAFDGNTFDMKKFQECDGYEEYISRYAATKKKVA
Run BLAST on NCBI

transcript from alignment at scaffold_63:101378..103208+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071632 ID=TCONS_00071632|Name=TCONS_00071632|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_63:101378..103208+ (Clytia hemisphaerica)
ttctttttagagAAAATAATAAACATTAAGTGACAGAAATTATGGGAAAC
TCGATCAGTCCTCATATAGAAAATGCACAAAAGACTGGTGTCTGTTCTTT
AAAAGCTATGAAATTGAAGGAggtaaaatatacttttttttctgtacttt
tttatttgtGATATATTTTCATcctgaaaaattcaaattatttgtATCGG
AAGGAAGGTAACAATATTCTTTTGAGGACAACAACTGCATTGACCACTTG
TTGAATTCTATCATCATCATTCCATCCCAATAAGGCTGATTTATCTCTTG
CTACTTATCATGAAAATGATATATCTGCTTTGTTTGTTTGCAAAAATCTC
TAACATTTATTTTCAGCTTCCACCTGAAATCTCAAAGTTACCAAAAACTC
TCAGGACTTTAGAACTATCGAATAATTCATTGAAGAATATTCCAGATGTC
ATTGGACAGTTTCAAATGTTGAAGACACTATCTGTTAATCAAAATCAATT
AGGTAGGAAAATGTATCAGTTAAAATATTGAAGAACAAAATTAAGAGTAA
TTTTAATCACTTTTGATAACGTAAAAGAGTTTTTCAAACACGCTATACAA
ACTTTTGAGTCCAAATGGTTTGGAACATGCAATTCCTTCTAAAGATCGTC
AATTTATCTAgttattcattttcttttccgTTCTAGTTGATATATCTCAA
CAAATTGACAAGCTGATAAAATTGGAAACTCTTGCGTTATCTTCAAATCA
CCTAACATCATTTTCTTTGTCAAATGCTGGTAAGAtgaaacatttaaaaa
ctgTAAACCTGTCTCACAACCGGTTAAAATCGTTTCCCATACATCTTTGT
AATCTACCAAATCTAGATGCTCTAGATTTATCAAATAACTCAATCACAAC
TTTACCAGATGatgtcaaaaatttaaaagctaTTGAGCTGAACTTGAACA
ATAATAAGTTAAATAGACTTAACAATGGCTTGTGTCAGTGTGAGCGTCTA
AAAGTGTTGCGGGTTGAAGAAAATTGTTTGGATATCAGCTCAATGACTGA
AGCCATACTGAAACAATCAAAGATATCATTAATTGCTTTTGATGGGAATA
CATTTGATATGAAAAAGTTCCAAGAATGCGATGGATATGAGGAGGTGAGT
TGACTAATATGATGATAATCTTTAAAGCTTTTCAACTCAGGCAAGAATCT
TGAAACGAGAGTAAGATGTATATCAACATGGATGTTTTACTTTAATCGGA
TAAATTTCGTGGAGATTTCGATAAATTTCGCGGTTCAGCTCATCCACAAA
ATTTTAAGATCCCACAGGTGACACTATtgggagacaatattttcacgatt
ctGTGCTTTTTACTGCCAAATCATGcattttggttgttgaaatagaCATT
GTTAGCGCCTCTTTGATGTCACTAAaagtattaaaaaaattatttaatcg
aaaattttttgaactttgtacAAAAGTATTTCGGGGtaaggcctttccaa
atttccattacGACTTAATTTTGCCGATGACACCtaaaaaatttatccca
ttaaatcAATTTGAGTAAGGAGATTGAACCCGATTTCTATGAAATCTCTG
AAAAacttgttcttcttttttttcagtatATTTCAAGATATgcagcaaca
aagaaaaaggtTGCTTAATTCTTACTGACATGGTGACACTTCGGGGACAC
ACAAACACTATTCAAAGGTATcgcattatttttttcaaataacaaATTTG
GTCACCTCTACGATCAAGTTGTATTGGGTCTGGTCAAGGAAATTGTGACT
AAAATGAATTATTTGAATGAAAGTATTATTT

Coding sequence (CDS) from alignment at scaffold_63:101378..103208+

>TCONS_00071632 ID=TCONS_00071632|Name=TCONS_00071632|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_63:101378..103208+ (Clytia hemisphaerica)
ATGGGAAACTCGATCAGTCCTCATATAGAAAATGCACAAAAGACTGGTGT
CTGTTCTTTAAAAGCTATGAAATTGAAGGAgCTTCCACCTGAAATCTCAA
AGTTACCAAAAACTCTCAGGACTTTAGAACTATCGAATAATTCATTGAAG
AATATTCCAGATGTCATTGGACAGTTTCAAATGTTGAAGACACTATCTGT
TAATCAAAATCAATTAGTTGATATATCTCAACAAATTGACAAGCTGATAA
AATTGGAAACTCTTGCGTTATCTTCAAATCACCTAACATCATTTTCTTTG
TCAAATGCTGGTAAGAtgaaacatttaaaaactgTAAACCTGTCTCACAA
CCGGTTAAAATCGTTTCCCATACATCTTTGTAATCTACCAAATCTAGATG
CTCTAGATTTATCAAATAACTCAATCACAACTTTACCAGATGatgtcaaa
aatttaaaagctaTTGAGCTGAACTTGAACAATAATAAGTTAAATAGACT
TAACAATGGCTTGTGTCAGTGTGAGCGTCTAAAAGTGTTGCGGGTTGAAG
AAAATTGTTTGGATATCAGCTCAATGACTGAAGCCATACTGAAACAATCA
AAGATATCATTAATTGCTTTTGATGGGAATACATTTGATATGAAAAAGTT
CCAAGAATGCGATGGATATGAGGAGtatATTTCAAGATATgcagcaacaa
agaaaaaggtTGCTTAAATGGGAAACTCGATCAGTCCTCATATAGAAAAT
GCACAAAAGACTGGTGTCTGTTCTTTAAAAGCTATGAAATTGAAGGAgCT
TCCACCTGAAATCTCAAAGTTACCAAAAACTCTCAGGACTTTAGAACTAT
CGAATAATTCATTGAAGAATATTCCAGATGTCATTGGACAGTTTCAAATG
TTGAAGACACTATCTGTTAATCAAAATCAATTAGTTGATATATCTCAACA
AATTGACAAGCTGATAAAATTGGAAACTCTTGCGTTATCTTCAAATCACC
TAACATCATTTTCTTTGTCAAATGCTGGTAAGAtgaaacatttaaaaact
gTAAACCTGTCTCACAACCGGTTAAAATCGTTTCCCATACATCTTTGTAA
TCTACCAAATCTAGATGCTCTAGATTTATCAAATAACTCAATCACAACTT
TACCAGATGatgtcaaaaatttaaaagctaTTGAGCTGAACTTGAACAAT
AATAAGTTAAATAGACTTAACAATGGCTTGTGTCAGTGTGAGCGTCTAAA
AGTGTTGCGGGTTGAAGAAAATTGTTTGGATATCAGCTCAATGACTGAAG
CCATACTGAAACAATCAAAGATATCATTAATTGCTTTTGATGGGAATACA
TTTGATATGAAAAAGTTCCAAGAATGCGATGGATATGAGGAGtatATTTC
AAGATATgcagcaacaaagaaaaaggtTGCTTAAATGGGAAACTCGATCA
GTCCTCATATAGAAAATGCACAAAAGACTGGTGTCTGTTCTTTAAAAGCT
ATGAAATTGAAGGAgCTTCCACCTGAAATCTCAAAGTTACCAAAAACTCT
CAGGACTTTAGAACTATCGAATAATTCATTGAAGAATATTCCAGATGTCA
TTGGACAGTTTCAAATGTTGAAGACACTATCTGTTAATCAAAATCAATTA
GTTGATATATCTCAACAAATTGACAAGCTGATAAAATTGGAAACTCTTGC
GTTATCTTCAAATCACCTAACATCATTTTCTTTGTCAAATGCTGGTAAGA
tgaaacatttaaaaactgTAAACCTGTCTCACAACCGGTTAAAATCGTTT
CCCATACATCTTTGTAATCTACCAAATCTAGATGCTCTAGATTTATCAAA
TAACTCAATCACAACTTTACCAGATGatgtcaaaaatttaaaagctaTTG
AGCTGAACTTGAACAATAATAAGTTAAATAGACTTAACAATGGCTTGTGT
CAGTGTGAGCGTCTAAAAGTGTTGCGGGTTGAAGAAAATTGTTTGGATAT
CAGCTCAATGACTGAAGCCATACTGAAACAATCAAAGATATCATTAATTG
CTTTTGATGGGAATACATTTGATATGAAAAAGTTCCAAGAATGCGATGGA
TATGAGGAGtatATTTCAAGATATgcagcaacaaagaaaaaggtTGCTTA
AATGGGAAACTCGATCAGTCCTCATATAGAAAATGCACAAAAGACTGGTG
TCTGTTCTTTAAAAGCTATGAAATTGAAGGAgCTTCCACCTGAAATCTCA
AAGTTACCAAAAACTCTCAGGACTTTAGAACTATCGAATAATTCATTGAA
GAATATTCCAGATGTCATTGGACAGTTTCAAATGTTGAAGACACTATCTG
TTAATCAAAATCAATTAGTTGATATATCTCAACAAATTGACAAGCTGATA
AAATTGGAAACTCTTGCGTTATCTTCAAATCACCTAACATCATTTTCTTT
GTCAAATGCTGGTAAGAtgaaacatttaaaaactgTAAACCTGTCTCACA
ACCGGTTAAAATCGTTTCCCATACATCTTTGTAATCTACCAAATCTAGAT
GCTCTAGATTTATCAAATAACTCAATCACAACTTTACCAGATGatgtcaa
aaatttaaaagctaTTGAGCTGAACTTGAACAATAATAAGTTAAATAGAC
TTAACAATGGCTTGTGTCAGTGTGAGCGTCTAAAAGTGTTGCGGGTTGAA
GAAAATTGTTTGGATATCAGCTCAATGACTGAAGCCATACTGAAACAATC
AAAGATATCATTAATTGCTTTTGATGGGAATACATTTGATATGAAAAAGT
TCCAAGAATGCGATGGATATGAGGAGtatATTTCAAGATATgcagcaaca
aagaaaaaggtTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044511XLOC_044511Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071632-proteinTCONS_00071632-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071632-exon-scaffold_63-1491911889:101378..101499TCONS_00071632-exon-scaffold_63-1491911889:101378..101499Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1510915933:101378..101499TCONS_00071632-exon-scaffold_63-1510915933:101378..101499Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1575043694:101378..101499TCONS_00071632-exon-scaffold_63-1575043694:101378..101499Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1491911889:101744..101879TCONS_00071632-exon-scaffold_63-1491911889:101744..101879Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1510915933:101744..101879TCONS_00071632-exon-scaffold_63-1510915933:101744..101879Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1575043694:101744..101879TCONS_00071632-exon-scaffold_63-1575043694:101744..101879Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1491911889:102064..102521TCONS_00071632-exon-scaffold_63-1491911889:102064..102521Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1510915933:102064..102521TCONS_00071632-exon-scaffold_63-1510915933:102064..102521Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1575043694:102064..102521TCONS_00071632-exon-scaffold_63-1575043694:102064..102521Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1491911889:103004..103208TCONS_00071632-exon-scaffold_63-1491911889:103004..103208Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1510915933:103004..103208TCONS_00071632-exon-scaffold_63-1510915933:103004..103208Clytia hemisphaericaexon
TCONS_00071632-exon-scaffold_63-1575043694:103004..103208TCONS_00071632-exon-scaffold_63-1575043694:103004..103208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:101378..103208 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56943	2.87883	4.17894	2.8558	4.69861	3.69045	0.807226	1.54715	0.19206	0.706174	0.774319	0.245119	0.0888922	0	0	0.192085	0.168604	0.0580852	0.264843	0.0934719	0.290964	0.213363	0.839879	1.3433	0.064507	0	0.550913	0.257732	0.250513	0.511619
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071632 vs. Swiss-Prot (Human)
Match: LRC57 (Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.172e-59
Identity = 113/240 (47.08%), Postives = 171/240 (71.25%), Query Frame = 3 
Query:   42 MGNS-ISPHIENAQKTGVCSLKAMKLKELPPEISKLPKTLRTLELSNNSLKNIPDV-IGQFQMLKTLSVNQNQLVDISQQIDKLIKLETLALSSNHLTSFSLSNAGKMKHLKTVNLSHNRLKSFPIHLCNLPNLDALDLSNNSITTLPDDVXXXXXXXXXXXXXXXXXXXXXXCQCERLKVLRVEENCLDISSMTEAILKQSKISLIAFDGNTFDMKKFQECDGYEEYISRYAATKKKVA 755
            MGNS +  H+E AQKTGV  LK   L E P ++ KL   LRT++LSNN ++++P + IG+F +LK+LS+N N+L  +  +I  L KLETL+L++NHL     S  G++  LKT++LS N+L + P  LC+L +LD +DLS N I ++PD V  L+ IELNLN N++++++  +  C RLK+LR+EENCL++S + ++IL  S+I L+A +GN F++KK +E +GY++Y+ R+ ATKKK A
Sbjct:    1 MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGKFTLLKSLSLNNNKLTVLPDEICNLKKLETLSLNNNHLRELP-STFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVMDLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKILRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA 239
The following BLAST results are available for this feature:
BLAST of TCONS_00071632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC573.172e-5947.08Leucine-rich repeat-containing protein 57 OS=Homo ... [more]
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