|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071631 ID=TCONS_00071631|Name=TCONS_00071631|organism=Clytia hemisphaerica|type=transcript|length=751bp
TTAAGGATTACGAGGGATGCGAAAAATCCGAACCATTACCGATGAACCAT
GGTGAAAGAATGTGTTGTCCACCAGGGAAACGCGGTCCCAAATGTAAACA
TCTCGTTTGGGAAAAACAAAACATCGATCAAGTTTGTTACTACGCAACAG
GTAATAAACCGGGAAAATTCAAAATCCAAAGAACCGGCAAAATCAATGCA
TTTAAACTAGAATACATCTCCGGACGAGTGAGGACATCCCCTACCAGTGC
TTTAGGTTCGATTTGGGGGCGATACGAACATACTTCTACAGAGATAATAT
CAATTATGATCCTAAACCCTTCAACAGCTATTCGAGTAGCTCCAAGTTCA
ACCAACAACCTAGACTTCCAAATACCAGGCTATCTACACGATTCACCAGA
GATTGTTTTCGACGTTCGAAATTCTTATTTTGATGGCACGAAAGGGGACG
AGTTACAAGTTTGGTATAATGAGGATTATTACGATACTTATGATAGCAAT
AATTCGGGTGAAGTCTGTATCAACGTATATGCCAGATTTGAGGCAGTACC
ATAAACTTTACCGACAGAATAGATAATGTAACCACGACCACACTGCacca
aacaattttcaaatgcaatcgaatttcatcaatttttgcACACTAGATGT
AAATACACTTTTATTCTATATTACAATACTCTTATCAcggaaaaagaaac
aaaattgcTATGCGTAATTATCACATTTGGTTCCTTCATTAATGATTTTA
A Run BLAST on NCBI protein sequence of TCONS_00071631-protein >TCONS_00071631-protein ID=TCONS_00071631-protein|Name=TCONS_00071631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
KDYEGCEKSEPLPMNHGERMCCPPGKRGPKCKHLVWEKQNIDQVCYYATG
NKPGKFKIQRTGKINAFKLEYISGRVRTSPTSALGSIWGRYEHTSTEIIS
IMILNPSTAIRVAPSSTNNLDFQIPGYLHDSPEIVFDVRNSYFDGTKGDE
LQVWYNEDYYDTYDSNNSGEVCINVYARFEAVP Run BLAST on NCBI transcript from alignment at scaffold_63:268..1538+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071631 ID=TCONS_00071631|Name=TCONS_00071631|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at scaffold_63:268..1538+ (Clytia hemisphaerica)
TTAAGGATTACGAGGGATGCGAAAAATCCGAACCATTACCGATGAACCAT
GGTGAAAGAATGTGTTGTCCACCAGGGAAACGCGGTCCCAAATGTAAACA
TCTCGGTAAGTAAGGTAGACCTTTAAAGGAAGTATAATTGTGGTTCAGGG
AGTAAGAGTGACCCCTTTGTATGTTTGTACCCACCCAACCCCTCTGTTAG
TTTTTGTCCAGATTCAAGTACAAAAAAGGGCCCAAATGATGACGTTATCA
CCAAACAATTGACTGGTGATAAAAGCAAGTCAATTGAGCGTTAATTTCGC
GACTAGAGAGTACTTAGGTCGAGTACTCGTTACTTCCATTTAAGCACTCG
TTACTTCTTGTTATttctcgttacttcttgttCCTCGTTATATGATAACA
ACcaatgaaataaagaaaaagataaatttttctGCTGCTCTTTCAAAACC
AAGACATGTCACCTTTTAGAATGCTTTAATCTTGCTTAGTTCCAATTTGT
CATCTCTTACTTACATATCTTTTTCCCTAAtcccaaattttacaatctga
TATGAACCAAGTGTGCATCATATAACCATTTTCTGATCCAATATATAACA
AATCTTGTCATTTACAAATTCTTAGTTTGGGAAAAACAAAACATCGATCA
AGTTTGTTACTACGCAACAGGTAATAAACCGGGAAAATTCAAAATCCAAA
GAACCGGCAAAATCAATGCATTTAAACTAGAATACATCTCCGGACGAGTG
AGGACATCCCCTACCAGTGCTTTAGGTTCGATTTGGGGGCGATACGAACA
TACTTCTACAGAGATAATATCAATTATGATCCTAAACCCTTCAACAGCTA
TTCGAGTAGCTCCAAGTTCAACCAACAACCTAGACTTCCAAATACCAGGC
TATCTACACGATTCACCAGAGATTGTTTTCGACGTTCGAAATTCTTATTT
TGATGGCACGAAAGGGGACGAGTTACAAGTTTGGTATAATGAGGATTATT
ACGATACTTATGATAGCAATAATTCGGGTGAAGTCTGTATCAACGTATAT
GCCAGATTTGAGGCAGTACCATAAACTTTACCGACAGAATAGATAATGTA
ACCACGACCACACTGCaccaaacaattttcaaatgcaatcgaatttcatc
aatttttgcACACTAGATGTAAATACACTTTTATTCTATATTACAATACT
CTTATCAcggaaaaagaaacaaaattgcTATGCGTAATTATCACATTTGG
TTCCTTCATTAATGATTTTAA Coding sequence (CDS) from alignment at scaffold_63:268..1538+ >TCONS_00071631 ID=TCONS_00071631|Name=TCONS_00071631|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_63:268..1538+ (Clytia hemisphaerica)
AAGGATTACGAGGGATGCGAAAAATCCGAACCATTACCGATGAACCATGG
TGAAAGAATGTGTTGTCCACCAGGGAAACGCGGTCCCAAATGTAAACATC
TCGTTTGGGAAAAACAAAACATCGATCAAGTTTGTTACTACGCAACAGGT
AATAAACCGGGAAAATTCAAAATCCAAAGAACCGGCAAAATCAATGCATT
TAAACTAGAATACATCTCCGGACGAGTGAGGACATCCCCTACCAGTGCTT
TAGGTTCGATTTGGGGGCGATACGAACATACTTCTACAGAGATAATATCA
ATTATGATCCTAAACCCTTCAACAGCTATTCGAGTAGCTCCAAGTTCAAC
CAACAACCTAGACTTCCAAATACCAGGCTATCTACACGATTCACCAGAGA
TTGTTTTCGACGTTCGAAATTCTTATTTTGATGGCACGAAAGGGGACGAG
TTACAAGTTTGGTATAATGAGGATTATTACGATACTTATGATAGCAATAA
TTCGGGTGAAGTCTGTATCAACGTATATGCCAGATTTGAGGCAGTACCAT
AAAAGGATTACGAGGGATGCGAAAAATCCGAACCATTACCGATGAACCAT
GGTGAAAGAATGTGTTGTCCACCAGGGAAACGCGGTCCCAAATGTAAACA
TCTCGTTTGGGAAAAACAAAACATCGATCAAGTTTGTTACTACGCAACAG
GTAATAAACCGGGAAAATTCAAAATCCAAAGAACCGGCAAAATCAATGCA
TTTAAACTAGAATACATCTCCGGACGAGTGAGGACATCCCCTACCAGTGC
TTTAGGTTCGATTTGGGGGCGATACGAACATACTTCTACAGAGATAATAT
CAATTATGATCCTAAACCCTTCAACAGCTATTCGAGTAGCTCCAAGTTCA
ACCAACAACCTAGACTTCCAAATACCAGGCTATCTACACGATTCACCAGA
GATTGTTTTCGACGTTCGAAATTCTTATTTTGATGGCACGAAAGGGGACG
AGTTACAAGTTTGGTATAATGAGGATTATTACGATACTTATGATAGCAAT
AATTCGGGTGAAGTCTGTATCAACGTATATGCCAGATTTGAGGCAGTACC
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071631-exon-scaffold_63-1491911889:268..372 | TCONS_00071631-exon-scaffold_63-1491911889:268..372 | Clytia hemisphaerica | exon |
| TCONS_00071631-exon-scaffold_63-1510915933:268..372 | TCONS_00071631-exon-scaffold_63-1510915933:268..372 | Clytia hemisphaerica | exon |
| TCONS_00071631-exon-scaffold_63-1575043694:268..372 | TCONS_00071631-exon-scaffold_63-1575043694:268..372 | Clytia hemisphaerica | exon |
| TCONS_00071631-exon-scaffold_63-1491911889:893..1538 | TCONS_00071631-exon-scaffold_63-1491911889:893..1538 | Clytia hemisphaerica | exon |
| TCONS_00071631-exon-scaffold_63-1510915933:893..1538 | TCONS_00071631-exon-scaffold_63-1510915933:893..1538 | Clytia hemisphaerica | exon |
| TCONS_00071631-exon-scaffold_63-1575043694:893..1538 | TCONS_00071631-exon-scaffold_63-1575043694:893..1538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:268..1538 + |
Blast
The following BLAST results are available for this feature:
|
