TCONS_00071628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071628
Unique NameTCONS_00071628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071628 ID=TCONS_00071628|Name=TCONS_00071628|organism=Clytia hemisphaerica|type=transcript|length=302bp
GAACGGCGGATTGAACCATATGAtgtttctttttctgtttttacgTCGAC
GATTGTTGTTTGGTTTAGGCGTGTACTCGAATTTATGGTTGTGCCCGGAT
CGTTCCAGGGCGTCTTCGTAATACGGGACGGTTGCGTTGAATATATCTTC
GTTTGAAGATAAATTTGATAGCCTGTTTGAGGATGACTGGTGGATGATTC
GATTGTACATGTACGTAACTCAGCTCGTTGTTTGGTTTGTGGTACGGTCG
GTAGCAGCCGCTGTTTAAATCAAGCGTTACATCCAGATAGTCTACCGTTT
TC
Run BLAST on NCBI

transcript from alignment at scaffold_62:412815..413116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071628 ID=TCONS_00071628|Name=TCONS_00071628|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_62:412815..413116 (Clytia hemisphaerica)
GAAAACGGTAGACTATCTGGATGTAACGCTTGATTTAAACAGCGGCTGCT
ACCGACCGTACCACAAACCAAACAACGAGCTGAGTTACGTACATGTACAA
TCGAATCATCCACCAGTCATCCTCAAACAGGCTATCAAATTTATCTTCAA
ACGAAGATATATTCAACGCAACCGTCCCGTATTACGAAGACGCCCTGGAA
CGATCCGGGCACAACCATAAATTCGAGTACACGCCTAAACCAAACAACAA
TCGTCGAcgtaaaaacagaaaaagaaacaTCATATGGTTCAATCCGCCGT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044507XLOC_044507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071628-exon-scaffold_62-1491911889:412815..413116TCONS_00071628-exon-scaffold_62-1491911889:412815..413116Clytia hemisphaericaexon
TCONS_00071628-exon-scaffold_62-1510915933:412815..413116TCONS_00071628-exon-scaffold_62-1510915933:412815..413116Clytia hemisphaericaexon
TCONS_00071628-exon-scaffold_62-1575043694:412815..413116TCONS_00071628-exon-scaffold_62-1575043694:412815..413116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:412815..413116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.762116	0.371592	2.58872	2.11055	0.513878	0	0	0	0.642221	0	0.386063	0	0.506859	0.263189	1.29826	0.464412	1.14424	0.879603	0.405073	2.1194	1.10529	0.53912	0.436914	0	0.409125	0	0.522506	1.11527	0	0.861827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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