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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071626 ID=TCONS_00071626|Name=TCONS_00071626|organism=Clytia hemisphaerica|type=transcript|length=1864bp
ATTTTTGTTATCTGTTATCTAAACGgtcttttaaatctttaaattgtttt
ttttttcactttagaaACTACGTAATTATTGACAGACATTGACGCTGTCA
AAGAATATTCTATAtacaattacaattacaaatatcTCCTATTCTACCAA
AAAAAATATcgacaaaattttctttgtacatTGCAATTAATTGTCAATCT
TTTTATCTTTCGTTCAATCATTACATTATTCCATAACTTTCACAATACAT
GAGTTGAACTGTCAAAAATGACTCAATATTTCATAATATCAGTTTGTTAG
AATCAGGCTTATTCCTCTTAAGGAATTTTAATTTATCACGTATCGGGAGT
TCGAATAGTAAAGAAACACGTCTTTAAACTGGTGCTGAACATCCCACAAT
ACAGGGCGTCCATATACTAATgaaactctctaattcgatctccaTGAGAC
AAGGATAAAAAACTCAAATCTCAaaatagagaaagattcgaactaTAGAG
AAAGTATTTTGAACGATTTTCCAATTAaaggaccaatattttagttcgaa
ttacagaaccATTCGAATAGccaaagttcgaattagagagagagttaaCT
ATATAGAATAATTTGTGAATAAGATCTTTTCTATTGAATTCATTGTTTTA
TTACTCCTCAAGAGAATGAGAAAGAAACACGTATTGTTTAGCTCTATTTT
GTCGAATGAATAGATTCTCAGCTGTCACTGCGCCCACACATCCTAATTTG
AATGTTATATGAATGTTGAATAAATGTTTTGTGCCGAATGAGTATTCTTT
TCGCCCATCCCAGTGATGGTTTTAAAACTATTTCCCGTCAAACTTTTACT
CAAGATTGCCAAGGTGCTGGGCCTCCCGAGTCAACTTTATTCAGTTTATG
ACACGATTCTTTGATACAGCCACACGTTTTAGGGACGTACATTTTGCGGG
CCTCTAATTTCCACCGACGACGTTTTTCAGTCCCTTTATAACACTGCAAG
AAAATGAGTTTTTCTTCGTACTCTAATGGTCCGCAATATTTACACGTTTC
AAAAGCTTTCTCAATGTCTTCAATATCGTAGAACGTGTGCAAAGGGGCTT
GACAAACCCCTCCACACACTACTGTCTCAACAGTAACATTTTCACAACCT
TTAGCTGAGAAAGTTTGTCGAAGTTTCTGAGCACGACAAAATCCGTATAA
AGTAGATGCTGCATTGTGGATGTCGTTATCTAACGGTAAAGATGGCTTCG
GAGATTGTTTAATAccttttgaaataatttcttGTGGTTTTTTACTCAGT
GATTTTGAAGGCAAGACTTTGATTGATCTCCCAGAATGTTTCTTGACTTT
CTTACTGTGTGAGTCTTTGTTAACAAAAGATGTATCAAAATCTTCGATTG
CTACGGATggtgaaattttggttttcgTTGAAGAGTCGGTTTTCGTTTTT
AAACTTGTAGAGTTTGTCGGTTTCGTTTGTAGCACGACTTTCTCTTTTTG
TACCGTTGTTTTCTCatcaatctttttcaatagcTTTAAGATGAGTTCAC
GAAATTTTTCGtcggaaaatttcttctcgctcGTTTCTTCCTTACTTAAT
ACACCGATCCTTTTCGTTCGAATTCGTTTTTCACGAGAATCTGTCTCGGT
GCCAATTCTTTTCGTTCGTCTTTTAGTCGTCACCTTTTGTTCATGATCTT
GCTCGACTCGTTTCGTTCGTAGTTTCGATTGACCATTGACTGCCAATAGA
AAACAGCTTAGAAGaatcaaaatgttgaaattcattttctttaaattttt
gttttaatttctgTAAAAGAGAAATGATAAGATATTAGTAACAGTAATTC
TTAATTGCCAAGTT Run BLAST on NCBI protein sequence of TCONS_00071626-protein >TCONS_00071626-protein ID=TCONS_00071626-protein|Name=TCONS_00071626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MNFNILILLSCFLLAVNGQSKLRTKRVEQDHEQKVTTKRRTKRIGTETDS
REKRIRTKRIGVLSKEETSEKKFSDEKFRELILKLLKKIDEKTTVQKEKV
VLQTKPTNSTSLKTKTDSSTKTKISPSVAIEDFDTSFVNKDSHSKKVKKH
SGRSIKVLPSKSLSKKPQEIISKGIKQSPKPSLPLDNDIHNAASTLYGFC
RAQKLRQTFSAKGCENVTVETVVCGGVCQAPLHTFYDIEDIEKAFETCKY
CGPLEYEEKLIFLQCYKGTEKRRRWKLEARKMYVPKTCGCIKESCHKLNK
VDSGGPAPWQS Run BLAST on NCBI transcript from alignment at scaffold_62:346467..348330 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071626 ID=TCONS_00071626|Name=TCONS_00071626|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at scaffold_62:346467..348330 (Clytia hemisphaerica)
AACTTGGCAATTAAGAATTACTGTTACTAATATCTTATCATTTCTCTTTT
Acagaaattaaaacaaaaatttaaagaaaatgaatttcaacattttgatt
CTTCTAAGCTGTTTTCTATTGGCAGTCAATGGTCAATCGAAACTACGAAC
GAAACGAGTCGAGCAAGATCATGAACAAAAGGTGACGACTAAAAGACGAA
CGAAAAGAATTGGCACCGAGACAGATTCTCGTGAAAAACGAATTCGAACG
AAAAGGATCGGTGTATTAAGTAAGGAAGAAACgagcgagaagaaattttc
cgaCGAAAAATTTCGTGAACTCATCTTAAAgctattgaaaaagattgatG
AGAAAACAACGGTACAAAAAGAGAAAGTCGTGCTACAAACGAAACCGACA
AACTCTACAAGTTTAAAAACGAAAACCGACTCTTCAAcgaaaaccaaaat
ttcaccATCCGTAGCAATCGAAGATTTTGATACATCTTTTGTTAACAAAG
ACTCACACAGTAAGAAAGTCAAGAAACATTCTGGGAGATCAATCAAAGTC
TTGCCTTCAAAATCACTGAGTAAAAAACCACaagaaattatttcaaaagg
TATTAAACAATCTCCGAAGCCATCTTTACCGTTAGATAACGACATCCACA
ATGCAGCATCTACTTTATACGGATTTTGTCGTGCTCAGAAACTTCGACAA
ACTTTCTCAGCTAAAGGTTGTGAAAATGTTACTGTTGAGACAGTAGTGTG
TGGAGGGGTTTGTCAAGCCCCTTTGCACACGTTCTACGATATTGAAGACA
TTGAGAAAGCTTTTGAAACGTGTAAATATTGCGGACCATTAGAGTACGAA
GAAAAACTCATTTTCTTGCAGTGTTATAAAGGGACTGAAAAACGTCGTCG
GTGGAAATTAGAGGCCCGCAAAATGTACGTCCCTAAAACGTGTGGCTGTA
TCAAAGAATCGTGTCATAAACTGAATAAAGTTGACTCGGGAGGCCCAGCA
CCTTGGCAATCTTGAGTAAAAGTTTGACGGGAAATAGTTTTAAAACCATC
ACTGGGATGGGCGAAAAGAATACTCATTCGGCACAAAACATTTATTCAAC
ATTCATATAACATTCAAATTAGGATGTGTGGGCGCAGTGACAGCTGAGAA
TCTATTCATTCGACAAAATAGAGCTAAACAATACGTGTTTCTTTCTCATT
CTCTTGAGGAGTAATAAAACAATGAATTCAATAGAAAAGATCTTATTCAC
AAATTATTCTATATAGttaactctctctctaattcgaactttggCTATTC
GAATggttctgtaattcgaactaaaatattggtccttTAATTGGAAAATC
GTTCAAAATACTTTCTCTAtagttcgaatctttctctatttTGAGATTTG
AGTTTTTTATCCTTGTCTCAtggagatcgaattagagagtttcATTAGTA
TATGGACGCCCTGTATTGTGGGATGTTCAGCACCAGTTTAAAGACGTGTT
TCTTTACTATTCGAACTCCCGATACGTGATAAATTAAAATTCCTTAAGAG
GAATAAGCCTGATTCTAACAAACTGATATTATGAAATATTGAGTCATTTT
TGACAGTTCAACTCATGTATTGTGAAAGTTATGGAATAATGTAATGATTG
AACGAAAGATAAAAAGATTGACAATTAATTGCAatgtacaaagaaaattt
tgtcgATATTTTTTTTGGTAGAATAGGAgatatttgtaattgtaattgta
TATAGAATATTCTTTGACAGCGTCAATGTCTGTCAATAATTACGTAGTtt
ctaaagtgaaaaaaaaaacaatttaaagatttaaaagacCGTTTAGATAA
CAGATAACAAAAAT Coding sequence (CDS) from alignment at scaffold_62:346467..348330 >TCONS_00071626 ID=TCONS_00071626|Name=TCONS_00071626|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_62:346467..348330 (Clytia hemisphaerica)
atgaatttcaacattttgattCTTCTAAGCTGTTTTCTATTGGCAGTCAA
TGGTCAATCGAAACTACGAACGAAACGAGTCGAGCAAGATCATGAACAAA
AGGTGACGACTAAAAGACGAACGAAAAGAATTGGCACCGAGACAGATTCT
CGTGAAAAACGAATTCGAACGAAAAGGATCGGTGTATTAAGTAAGGAAGA
AACgagcgagaagaaattttccgaCGAAAAATTTCGTGAACTCATCTTAA
AgctattgaaaaagattgatGAGAAAACAACGGTACAAAAAGAGAAAGTC
GTGCTACAAACGAAACCGACAAACTCTACAAGTTTAAAAACGAAAACCGA
CTCTTCAAcgaaaaccaaaatttcaccATCCGTAGCAATCGAAGATTTTG
ATACATCTTTTGTTAACAAAGACTCACACAGTAAGAAAGTCAAGAAACAT
TCTGGGAGATCAATCAAAGTCTTGCCTTCAAAATCACTGAGTAAAAAACC
ACaagaaattatttcaaaaggTATTAAACAATCTCCGAAGCCATCTTTAC
CGTTAGATAACGACATCCACAATGCAGCATCTACTTTATACGGATTTTGT
CGTGCTCAGAAACTTCGACAAACTTTCTCAGCTAAAGGTTGTGAAAATGT
TACTGTTGAGACAGTAGTGTGTGGAGGGGTTTGTCAAGCCCCTTTGCACA
CGTTCTACGATATTGAAGACATTGAGAAAGCTTTTGAAACGTGTAAATAT
TGCGGACCATTAGAGTACGAAGAAAAACTCATTTTCTTGCAGTGTTATAA
AGGGACTGAAAAACGTCGTCGGTGGAAATTAGAGGCCCGCAAAATGTACG
TCCCTAAAACGTGTGGCTGTATCAAAGAATCGTGTCATAAACTGAATAAA
GTTGACTCGGGAGGCCCAGCACCTTGGCAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071626-exon-scaffold_62-1491911889:346467..348330 | TCONS_00071626-exon-scaffold_62-1491911889:346467..348330 | Clytia hemisphaerica | exon |
| TCONS_00071626-exon-scaffold_62-1510915933:346467..348330 | TCONS_00071626-exon-scaffold_62-1510915933:346467..348330 | Clytia hemisphaerica | exon |
| TCONS_00071626-exon-scaffold_62-1575043694:346467..348330 | TCONS_00071626-exon-scaffold_62-1575043694:346467..348330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:346467..348330 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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