TCONS_00071622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071622
Unique NameTCONS_00071622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071622 ID=TCONS_00071622|Name=TCONS_00071622|organism=Clytia hemisphaerica|type=transcript|length=567bp
ATTAGATCAAAGTAGAAAATGTTCACGtcgtttgaaatttttaagtgGAT
TTATAAGTTGTAAAATTTGacacaatatctttgtttcaaactcagagttt
catggtgctCAGGCACTTATTGAGCGAGGAGAAGATAAACAACCTCTACA
GTAATAAAGAGTAAAGATATATATTTTAAGGTGGATTTTCAATTTGTAAA
ATTAATCATGGTCATGATAGCAAAAATGTACcttaatgaaaaaatgaatt
taaattcaaaaaatctaaTCAAAGGatcaaaaaggaaaatgaactcGTAG
CAAATGTACCCTATACAGGGATCATATTGAGGCCCAAAGAACGGCAAAGG
GACGAacaaattacaatttttttgagctaaaaattCGGTTCAAGTATACA
ACTCTAATCATTCGCCAGCCTGAAATCCAAGATTCGCCggagtttatttt
tcatttgtcagcctatcaaaaacaaagaaatacatgtttttctataagca
tatttttttaagaaaacacaCTCAGTTAAGCTTAGCTATATTTTGGAATC
AAGctcaaattatgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_62:211564..212130

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071622 ID=TCONS_00071622|Name=TCONS_00071622|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_62:211564..212130 (Clytia hemisphaerica)
tttcataatttgagCTTGATTCCAAAATATAGCTAAGCTTAACTGAGtgt
gttttcttaaaaaaatatgcttatagaaaaacatgtatttctttgttttt
gataggctgacaaatgaaaaataaactccGGCGAATCTTGGATTTCAGGC
TGGCGAATGATTAGAGTTGTATACTTGAACCGaatttttagctcaaaaaa
attgtaatttgtTCGTCCCTTTGCCGTTCTTTGGGCCTCAATATGATCCC
TGTATAGGGTACATTTGCTACgagttcattttcctttttgatCCTTTGAt
tagattttttgaatttaaattcattttttcattaagGTACATTTTTGCTA
TCATGACCATGATTAATTTTACAAATTGAAAATCCACCTTAAAATATATA
TCTTTACTCTTTATTACTGTAGAGGTTGTTTATCTTCTCCTCGCTCAATA
AGTGCCTGagcaccatgaaactctgagtttgaaacaaagatattgtgtCA
AATTTTACAACTTATAAATCcacttaaaaatttcaaacgaCGTGAACATT
TTCTACTTTGATCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044501XLOC_044501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071622-exon-scaffold_62-1491911889:211564..212130TCONS_00071622-exon-scaffold_62-1491911889:211564..212130Clytia hemisphaericaexon
TCONS_00071622-exon-scaffold_62-1510915933:211564..212130TCONS_00071622-exon-scaffold_62-1510915933:211564..212130Clytia hemisphaericaexon
TCONS_00071622-exon-scaffold_62-1575043694:211564..212130TCONS_00071622-exon-scaffold_62-1575043694:211564..212130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:211564..212130 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202191	0	0.227877	0.247134	0.267283	0.105605	0.399859	0.71567	0.341273	0.20688	0.113276	0.14349	0.977046	0.695179	0	0	0.0810838	0	0.526727	0.475298	0.198193	0.280412	0	0.111624	0.106399	0.93	0	0	0.480686	0.381552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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