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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071621 ID=TCONS_00071621|Name=TCONS_00071621|organism=Clytia hemisphaerica|type=transcript|length=994bp
CTATTCAAATTGATTATGACAGAATTAGTAATTTGCCTGCAGATGGGTAT
TTAGACATTGAAAGTTTAAAAGTAGAATACCCATCTGAAAGAATTGATGA
AGGTCCTGAAATGGAAATTCCAGAAAAAGAGAATATTGAAAGTACCAGCT
TCCTTCCTAGCAACGTAGCTATGCCCACCGAGAAGGAACGTTTGAACAAT
ACTCTTGATGAAATAACATTGGAGATAAATCAGAACGAGCCAATTAATGA
GTTTAATACACCTAATTTTGGAACATTAGCCTTTCCTACTCTCTTTCCAA
CTGTGGAAGGTGACCTGTTTTTAAATGACACAATTAGGAATGTGGCTGAT
AATGAATTGGAAACTCTctcttaaaaattaaagcatcttataaaattTGC
TGAGGAAAAGAATGGTAAATGGCATTATCGCTTTGCTTCACATCCTCGTT
TTGCTTACTGGGCTTACAATATTTTGTACCGAAGAAGAATTTTTTCGCAA
GGTTCTTACTATATAAAGCAAAACCCAGGTGATGCAAACTTAACAATGGA
TGATCTAAGGGAAATGGCATCAGAAAACAATTATAATCTTTTGATGAATA
AAATTATTTACTGTGCTAAAAATATTGGGGGTTCTAACAGTTTCTGGCAA
cagcaaaaaaataattctgaaaGCTACAATCACTCAGGTTGGAGCGCCCA
CTATTTTTTGGACGCTTTCTTGTGCTGAATTACACTATCTTTTGTCTCAA
ACTGATGTATTAGAGCTTTCCAGTAATGAGACAAGAGAGAATGTTATAAT
GAATCATCACTTAGTTGACTGGTATTTTACTGAGCGGGTTGAATCATTTG
TTAAAAATTGGCTATATGAAAATTTGAAGGCAAAATGGCATTGGTTTCGA
TATGAATTTGCTATTAATCGAGGGGCTATACACTGTCATGGTGTGGCAAA
ATTAAGTGATGATCCTGGTCTGTGTGAATTGTCTAAAGAAGCAG Run BLAST on NCBI protein sequence of TCONS_00071621-protein >TCONS_00071621-protein ID=TCONS_00071621-protein|Name=TCONS_00071621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
IQIDYDRISNLPADGYLDIESLKVEYPSERIDEGPEMEIPEKENIESTSF
LPSNVAMPTEKERLNNTLDEITLEINQNEPINEFNTPNFGTLAFPTLFPT
VEGDLFLNDTIRNVADNELETLS Run BLAST on NCBI transcript from alignment at scaffold_62:77315..78308 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071621 ID=TCONS_00071621|Name=TCONS_00071621|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at scaffold_62:77315..78308 (Clytia hemisphaerica)
CTGCTTCTTTAGACAATTCACACAGACCAGGATCATCACTTAATTTTGCC
ACACCATGACAGTGTATAGCCCCTCGATTAATAGCAAATTCATATCGAAA
CCAATGCCATTTTGCCTTCAAATTTTCATATAGCCAATTTTTAACAAATG
ATTCAACCCGCTCAGTAAAATACCAGTCAACTAAGTGATGATTCATTATA
ACATTCTCTCTTGTCTCATTACTGGAAAGCTCTAATACATCAGTTTGAGA
CAAAAGATAGTGTAATTCAGCACAAGAAAGCGTCCAAAAAATAGTGGGCG
CTCCAACCTGAGTGATTGTAGCtttcagaattatttttttgctgTTGCCA
GAAACTGTTAGAACCCCCAATATTTTTAGCACAGTAAATAATTTTATTCA
TCAAAAGATTATAATTGTTTTCTGATGCCATTTCCCTTAGATCATCCATT
GTTAAGTTTGCATCACCTGGGTTTTGCTTTATATAGTAAGAACCTTGCGA
AAAAATTCTTCTTCGGTACAAAATATTGTAAGCCCAGTAAGCAAAACGAG
GATGTGAAGCAAAGCGATAATGCCATTTACCATTCTTTTCCTCAGCAaat
tttataagatgctttaatttttaagagAGAGTTTCCAATTCATTATCAGC
CACATTCCTAATTGTGTCATTTAAAAACAGGTCACCTTCCACAGTTGGAA
AGAGAGTAGGAAAGGCTAATGTTCCAAAATTAGGTGTATTAAACTCATTA
ATTGGCTCGTTCTGATTTATCTCCAATGTTATTTCATCAAGAGTATTGTT
CAAACGTTCCTTCTCGGTGGGCATAGCTACGTTGCTAGGAAGGAAGCTGG
TACTTTCAATATTCTCTTTTTCTGGAATTTCCATTTCAGGACCTTCATCA
ATTCTTTCAGATGGGTATTCTACTTTTAAACTTTCAATGTCTAAATACCC
ATCTGCAGGCAAATTACTAATTCTGTCATAATCAATTTGAATAG Coding sequence (CDS) from alignment at scaffold_62:77315..78308 >TCONS_00071621 ID=TCONS_00071621|Name=TCONS_00071621|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_62:77315..78308 (Clytia hemisphaerica)
ttaagagAGAGTTTCCAATTCATTATCAGCCACATTCCTAATTGTGTCAT
TTAAAAACAGGTCACCTTCCACAGTTGGAAAGAGAGTAGGAAAGGCTAAT
GTTCCAAAATTAGGTGTATTAAACTCATTAATTGGCTCGTTCTGATTTAT
CTCCAATGTTATTTCATCAAGAGTATTGTTCAAACGTTCCTTCTCGGTGG
GCATAGCTACGTTGCTAGGAAGGAAGCTGGTACTTTCAATATTCTCTTTT
TCTGGAATTTCCATTTCAGGACCTTCATCAATTCTTTCAGATGGGTATTC
TACTTTTAAACTTTCAATGTCTAAATACCCATCTGCAGGCAAATTACTAA
TTCTGTCATAATCAATTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071621-exon-scaffold_62-1491911889:77315..78308 | TCONS_00071621-exon-scaffold_62-1491911889:77315..78308 | Clytia hemisphaerica | exon |
| TCONS_00071621-exon-scaffold_62-1510915933:77315..78308 | TCONS_00071621-exon-scaffold_62-1510915933:77315..78308 | Clytia hemisphaerica | exon |
| TCONS_00071621-exon-scaffold_62-1575043694:77315..78308 | TCONS_00071621-exon-scaffold_62-1575043694:77315..78308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:77315..78308 . |
Blast
The following BLAST results are available for this feature:
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