TCONS_00071612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071612
Unique NameTCONS_00071612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071612 ID=TCONS_00071612|Name=TCONS_00071612|organism=Clytia hemisphaerica|type=transcript|length=676bp
atttatatttaaaaaaattgtctggttttataataaaaaaaaagttgaaa
taagtATATCTGTTTGTACGAGGTTCATATTGACTGATACTCTATGGTTT
TCATGAAATCTTTCAACTGTTTTGTTCACCTTTTCTCAACAGTAACCCAA
ATATCCCCTTTCGGTTGCCCACTTCTTGAACTTGGATCTGGAATCAGTTC
ATCCACAGTTTTTGAGCATGGTACAATCTTATATTTGCTCAACAACCGTG
CAATCACAATTTTGACTTCCATTGTCGCGAATCGCTGAGCAATACAATTC
CTCGGTCCATGTCCAAAGGCACCAGTGACAAACGGGTGTCTGTCAACTTT
CTTTTCAGCACTGTAATTCTCAGGGTCGAATACTTCAGGATTGGGGTAAT
ATTTCTCATCTTTCACCACAGCAGTTGCCGCATATCGAACGAAAATACCT
TTTGGGATCACTATATCAGTGTCAGGGATCTTATATTCTTCCTTGGAGCA
CCTTTCTAAATGCGTTAAAGGATACATTCTGAAGgtttcttggaagaatt
tttccaTATAAGGCATATTCATGATGGTAGCGTAATCGAAGTTTGTAGAT
CCGGTGGATTCGATAGCTTCTTGAACTTCTTGGTAGAGTCTTTCTTGGCA
ATCTTGATGCTTTGCCAAGAAATACA
Run BLAST on NCBI

transcript from alignment at scaffold_62:317806..318541-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071612 ID=TCONS_00071612|Name=TCONS_00071612|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at scaffold_62:317806..318541- (Clytia hemisphaerica)
ATTTATATTTAAAAAAATTGTCTGGTTTTATAATAAAAAAAAAGTTGAAA
TAAGTATATCTGTTTGTACGAGGTTCATATTGACTGATACTCTATGGTTT
TCATGAAATCTTTCAACTGTTTTGTTCACCTTTTCTCAACAGTAACCCAA
ATATCCCCTTTCGGTTGCCCACTTCTTGAACTTGGATCTGGAATCAGTTC
ATCCACAGTTTTTGAGCATGGTACAATCTTATATTTGCTCAACAACCGTG
CAATCACAATTTTGACTTCCATTGTCGCGAATCGCTGAGCAATACAATTC
CTCGGTCCATGTCCAAAGGCACCAGTGACAAACGGGTGTCTGTCAACTTT
CTTTTCAGCACTGTAATTCTCAGGGTCGAATACTTCAGGATTGGGGTAAT
ATTTCTCATCTTTCACCACAGCAGTTGCCGCATATCGAACGAAAATACCT
TTTGGGATCACTATATCAGTGTCAGGGATCTTATATTCTTCCTTGGAGCA
CCTTTCTAAATGCGTTAAAGGATACATTCTGAAGGTTTCTTGGAAGAATT
TTTCCATATAAGGCATATTCATAATGGTAGANTACATTCTTAGGGTTTCT
TGGAAGAATTTTTCCATATAAGGCATATTCATGATGGTAGCGTAATCGAA
GTTTGTAGATCCGGTGGATTCGATAGCTTCTTGAACTTCTTGGTAGAGTC
TTTCTTGGCAATCTTGATGCTTTGCCAAGAAATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044491XLOC_044491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071612-exon-scaffold_62-1575043694:317980..318541TCONS_00071612-exon-scaffold_62-1575043694:317980..318541Clytia hemisphaericaexon
TCONS_00071612-exon-scaffold_62-1575043694:317806..317919TCONS_00071612-exon-scaffold_62-1575043694:317806..317919Clytia hemisphaericaexon
TCONS_00071612-exon-scaffold_62-1510915933:317980..318541TCONS_00071612-exon-scaffold_62-1510915933:317980..318541Clytia hemisphaericaexon
TCONS_00071612-exon-scaffold_62-1510915933:317806..317919TCONS_00071612-exon-scaffold_62-1510915933:317806..317919Clytia hemisphaericaexon
TCONS_00071612-exon-scaffold_62-1491911889:317980..318541TCONS_00071612-exon-scaffold_62-1491911889:317980..318541Clytia hemisphaericaexon
TCONS_00071612-exon-scaffold_62-1491911889:317806..317919TCONS_00071612-exon-scaffold_62-1491911889:317806..317919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:317806..318541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.9175	36.8486	25.8009	22.5546	1.79783	1.60003	2.53661	2.72842	9.01882	14.2956	14.7529	1.7329	5.48812	0.675753	5.32636	4.04567	3.9269	11.361	26.4295	26.5163	13.8548	15.5947	24.0662	25.2083	22.7376	23.9944	172.293	147.102	638.458	484.008
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002403Cyt_P450_E_grp-IV
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0004497monooxygenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00071612 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 1.145e-29
Identity = 65/185 (35.14%), Postives = 102/185 (55.14%), Query Frame = -3 
Query:  129 YFLAKHQDCQERLYQEVQEAIESTGSTNFDYATIMNMPYMEKFFQETFRMYPLT-HLERCSKEEYKIPDTDIVIPKGIFVRYAATAVVKDEKYYPNPEVFDPENYSAEKKVDRHPFVTGAFGHGPRNCIAQRFATMEVKIVIARLLSKYKIVPCSKTVDELIPDPSSRSG--QPKGDIWVTVEKR 674
            Y LA H D Q++L +E+   + +     +D  T++ M Y++    ET R++P+   LER  K++ +I    + IPKG+ V   + A+ +D KY+  PE F PE +S + K +  P++   FG GPRNCI  RFA M +K+ + R+L  +   PC +T    IP   S  G  QP+  + + VE R
Sbjct:  319 YELATHPDVQQKLQEEIDAVLPNKAPPTYD--TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEI--NGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00071612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A41.145e-2935.14Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
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